Prupe.7G198600_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
18656455 .. 18658092
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G198600.1

Sequence Viewer

Length: 1638 bp
ATGACCCTCTTGTTCTTCACAGCCCGTCCCACCTTTTGGGTTCGAGCCTCCAAGATCGCCATTTCCCATTTCCACAGTCTTGCCCATGGAGGAGCTCGACCTCAAATAGAGGTAATATCAAACCCAGAGGCTTGGTTTGTTAAGGTTGTTTGCACACTCTTTGTTCGCTCGCATGCTTTGGATTCTTACTTGGGTTATCTTAGTAAGAACTTGACGCCTTCTATTGCTTTCGAGGTTATTAGACGGCTAAACCATCCGAAACTGGGGTTGAAGTTCTTTGAGCTTAGTAGGCTCAGTTTGAGTGTTAACCATAGTGTATGGACGTACAATTTTCTTTTGAGGTCTCTATGTCAAATTGGTCTTCAAGATTCTGCTAAGTTGGTGTTTGATTACATGAGGAGTGACGGTCATACGCCTGATGATTCGATTGCAGAACTATTGGTATCATCCTATGCCCAAATGGGCAAGTTAAATAACGCTGAGAAACTTCTTGATGAGGTTCACTGTGGTGAGGTTAGATTGTCGCCTTTGGTGTACAATAACTTGTTCAATGTGTTGGTTAAGCAGAATAAAGTAGAGGAGGCTGTTTGCTTATTTAGAAAGCATATGGGTTCGCATTGTCGTCCAGATAGTTGGACTTTCAATATTCTAATTCGAGGTTTATGCAGAATTGGAGAAATTGATAAGGCTTTTGAGTTTTTCAGTGATATGGAGAGTTTTGGTTGTTACCCTGATATCGTTACATATAACACACTAATTAGTGGACTTTGTAGGGCTAATGAGGTAGATAGAGGGTGTCATTTACTTAAGGAGGTTCAGTCAAGAATCGAACTTTCACCGGATGTTATAACTTTTACGTCAGTCATATCAGGCTACTGCAAATTGGGTAAGATGGAGGAGGCCTCTGTTCTTTTTGATGAGATGAATAATTCTGGAGTTGGACCAACTTCTGTTACTTTTAATGCATTGATTGATGGATTTGGTAAGTCTGGTAACATGATTTCTGCACGTGCTATGTATGAGAAAATGCTCTTTCATGGTTATCGTCCGGATGTTATAACCTTCACTTCCCTAATTGATGGCTATTGTCGAGCTGGGAAACTGAGTCAGGGATTAAAGCTTTGGCAAGAGATGAATGCAAAAAATGTATCTCCAAGTGCATATACGTTCTCTGTCCTTATTAATGCTTTGTGCAGGGAGAATAGACTACAGGAGGCGCGTGAGTTTCTGAGGCAATTGAAGAGGAGTAATGTCATTCCACGACCTTTTATATATAACCCTGTGATAGATGGATTTTGTAAGGCTGGCAATGTTGATGAGGCAAACCTAATTGTGGCAGAGATGGAGGAGAAGAGATGTAGCCCTGATAAAGTGACATTTACCATTCTCATACTCGGGAATTGTATGAAAGGGAGAATGTCAGAGGCAATTAGCAACTTTAAAAAAATGTTGGCGATTGGATGTGCCCCAGACAACATCACTGTAGATTCTTTGATATCTTGCCTCATGAAGGCTGGGATGCCTAATGAAGCCCATCACATTAAGAAAATTGCATGTGAGGATCTGAATTTGGGTATGTCACCTTCACGAAGAGCTGATCATTTGAGAGCAAATGCAAAAATTACAGTGGCTGTTTGA

Protein Analysis

546

Amino Acids

61.15

Weight (kDa)

8.53

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 848, 1058
AccB7I CCANNNNNTGG 1 cut(s) 36
AccII CGCG 1 cut(s) 1219
AccIII TCCGGA 1 cut(s) 1048
AclWI GGATC 1 cut(s) 1569
AcsI RAATTY 1 cut(s) 1567
AcvI CACGTG 1 cut(s) 1010
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 2 cut(s) 326, 536
AfiI CCNNNNNNNGG 4 cut(s) 36, 263, 1333, 1510
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 5 cut(s) 271, 365, 550, 643, 1240
AleI CACNNNNGTG 1 cut(s) 507
AluBI AGCT 5 cut(s) 95, 283, 1094, 1120, 1595
AluI AGCT 5 cut(s) 95, 283, 1094, 1120, 1595
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 1 cut(s) 1569
AlwNI CAGNNNCTG 1 cut(s) 1631
Ama87I CYCGRG 1 cut(s) 1394
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 1 cut(s) 900
ApoI RAATTY 1 cut(s) 1567
AseI ATTAAT 1 cut(s) 1182
AspLEI GCGC 1 cut(s) 1219
AspS9I GGNCC 1 cut(s) 941
AsuHPI GGTGA 3 cut(s) 521, 828, 1572
AvaI CYCGRG 1 cut(s) 1394
AvaII GGWCC 1 cut(s) 941
BaeGI GKGCMC 1 cut(s) 1468
BanII GRGCYC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 1567, 1599
BbrPI CACGTG 1 cut(s) 1010
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 97
BccI CCATC 7 cut(s) 261, 886, 968, 1073, 1283, 1336, 1542
BceAI ACGGC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 645, 679
BclI TGATCA 1 cut(s) 1597
BcoDI GTCTC 1 cut(s) 348
BfmI CTRYAG 2 cut(s) 1208, 1482
BfrI CTTAAG 1 cut(s) 806
Bme18I GGWCC 1 cut(s) 941
BmeT110I CYCGRG 1 cut(s) 1394
BmgT120I GGNCC 1 cut(s) 941
BmrI ACTGGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 1509
BmuI ACTGGG 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 1 cut(s) 954
BsaAI YACGTR 1 cut(s) 1010
BsaHI GRCGYC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 2 cut(s) 838, 1048
BsaXI ACNNNNNCTCC 4 cut(s) 391, 421, 803, 833
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 263, 1333, 1510
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 1315
BseAI TCCGGA 1 cut(s) 1048
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 6 cut(s) 253, 446, 847, 1057, 1466, 1524
BseLI CCNNNNNNNGG 4 cut(s) 36, 263, 1333, 1510
BseMI GCAATG 1 cut(s) 1315
BseMII CTCAG 4 cut(s) 307, 471, 1094, 1220
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 6 cut(s) 105, 412, 593, 911, 1258, 1361
BseSI GKGCMC 1 cut(s) 1468
BseYI CCCAGC 2 cut(s) 1094, 1514
BsgI GTGCAG 2 cut(s) 990, 1213
Bsh1236I CGCG 1 cut(s) 1219
BshFI GGCC 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 1394
BsiSI CCGG 2 cut(s) 839, 1049
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 4 cut(s) 36, 263, 1333, 1510
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 1 cut(s) 902
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 1394
Bsp1286I GDGCHC 2 cut(s) 97, 1468
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1407I TGTACA 1 cut(s) 534
Bsp143I GATC 3 cut(s) 54, 1561, 1597
Bsp19I CCATGG 1 cut(s) 85
BspANI GGCC 1 cut(s) 902
BspCNI CTCAG 4 cut(s) 306, 472, 1095, 1221
BspEI TCCGGA 1 cut(s) 1048
BspFNI CGCG 1 cut(s) 1219
BspHI TCATGA 1 cut(s) 1506
BspPI GGATC 1 cut(s) 1569
BspQI GCTCTTC 1 cut(s) 1585
BspTI CTTAAG 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 1315
BsrGI TGTACA 1 cut(s) 534
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 3 cut(s) 54, 1561, 1597
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 5 cut(s) 77, 407, 506, 1483, 1627
Bst6I CTCTTC 3 cut(s) 1235, 1346, 1585
BstACI GRCGYC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 806
BstAUI TGTACA 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 1010
BstC8I GCNNGC 3 cut(s) 170, 174, 1306
BstDEI CTNAG 7 cut(s) 200, 284, 293, 375, 480, 1103, 1229
BstDSI CCRYGG 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 1508
BstF5I GGATG 6 cut(s) 253, 446, 847, 1057, 1466, 1524
BstFNI CGCG 1 cut(s) 1219
BstHHI GCGC 1 cut(s) 1219
BstKTI GATC 3 cut(s) 57, 1564, 1600
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 3 cut(s) 54, 1561, 1597
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNSI RCATGY 2 cut(s) 176, 1557
BstSFI CTRYAG 2 cut(s) 1208, 1482
BstSLI GKGCMC 1 cut(s) 1468
BstUI CGCG 1 cut(s) 1219
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 1561
BstXI CCANNNNNNTGG 2 cut(s) 132, 633
BstYI RGATCY 1 cut(s) 1561
BsuRI GGCC 1 cut(s) 902
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 6 cut(s) 253, 446, 847, 1057, 1466, 1524
BtsIMutI CAGTG 4 cut(s) 502, 709, 1479, 1632
Cac8I GCNNGC 3 cut(s) 170, 174, 1306
CaiI CAGNNNCTG 1 cut(s) 1631
CciI TCATGA 1 cut(s) 1506
CfoI GCGC 1 cut(s) 1219
Cfr13I GGNCC 1 cut(s) 941
CseI GACGC 1 cut(s) 223
Csp6I GTAC 2 cut(s) 325, 535
CviAII CATG 7 cut(s) 86, 173, 394, 997, 1037, 1507, 1554
CviQI GTAC 2 cut(s) 325, 535
DdeI CTNAG 7 cut(s) 200, 284, 293, 375, 480, 1103, 1229
DpnI GATC 3 cut(s) 56, 1563, 1599
DpnII GATC 3 cut(s) 54, 1561, 1597
DraI TTTAAA 1 cut(s) 1441
Eam1104I CTCTTC 3 cut(s) 1235, 1346, 1585
EarI CTCTTC 3 cut(s) 1235, 1346, 1585
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 902
Eco24I GRGCYC 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 2 cut(s) 736, 1497
Eco47I GGWCC 1 cut(s) 941
Eco53kI GAGCTC 1 cut(s) 95
Eco72I CACGTG 1 cut(s) 1010
Eco88I CYCGRG 1 cut(s) 1394
EcoICRI GAGCTC 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 1508
EcoRV GATATC 2 cut(s) 736, 1497
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 967
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 7 cut(s) 89, 176, 397, 1000, 1040, 1510, 1557
FaqI GGGAC 1 cut(s) 12
FatI CATG 7 cut(s) 85, 172, 393, 996, 1036, 1506, 1553
FauNDI CATATG 1 cut(s) 606
FbaI TGATCA 1 cut(s) 1597
FokI GGATG 6 cut(s) 240, 433, 854, 1064, 1473, 1531
FriOI GRGCYC 1 cut(s) 97
GlaI GCGC 1 cut(s) 1218
GsaI CCCAGC 2 cut(s) 1098, 1518
GsuI CTGGAG 1 cut(s) 954
HaeIII GGCC 1 cut(s) 902
HapII CCGG 2 cut(s) 839, 1049
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 1219
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 7 cut(s) 89, 176, 397, 1000, 1040, 1510, 1557
Hin6I GCGC 1 cut(s) 1217
HinP1I GCGC 1 cut(s) 1217
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 1 cut(s) 1118
HinfI GANTC 6 cut(s) 182, 368, 422, 825, 1105, 1487
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 2 cut(s) 839, 1049
HphI GGTGA 3 cut(s) 521, 828, 1572
Hpy166II GTNNAC 4 cut(s) 307, 502, 535, 764
Hpy188I TCNGA 4 cut(s) 258, 1230, 1423, 1566
Hpy188III TCNNGA 9 cut(s) 365, 491, 626, 822, 933, 1049, 1396, 1507, 1587
Hpy8I GTNNAC 4 cut(s) 307, 502, 535, 764
HpyAV CCTTC 4 cut(s) 228, 1072, 1504, 1593
HpyCH4III ACNGT 5 cut(s) 77, 407, 506, 1483, 1627
HpyCH4IV ACGT 4 cut(s) 323, 857, 1009, 1166
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 7 cut(s) 200, 284, 293, 375, 480, 1103, 1229
HpySE526I ACGT 4 cut(s) 323, 857, 1009, 1166
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 7 cut(s) 89, 176, 397, 1000, 1040, 1510, 1557
HspAI GCGC 1 cut(s) 1217
Kpn2I TCCGGA 1 cut(s) 1048
Ksp22I TGATCA 1 cut(s) 1597
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 54, 1561, 1597
LguI GCTCTTC 1 cut(s) 1585
LmnI GCTCC 1 cut(s) 92
LweI GCATC 1 cut(s) 1509
MaeII ACGT 4 cut(s) 323, 857, 1009, 1166
MaeIII GTNAC 7 cut(s) 401, 725, 739, 952, 992, 1372, 1578
MalI GATC 3 cut(s) 56, 1563, 1599
MboI GATC 3 cut(s) 54, 1561, 1597
MboII GAAGA 5 cut(s) 7, 353, 1252, 1363, 1602
MfeI CAATTG 1 cut(s) 1235
MflI RGATCY 1 cut(s) 1561
MhlI GDGCHC 2 cut(s) 97, 1468
MlyI GAGTC 1 cut(s) 1114
MmeI TCCRAC 2 cut(s) 614, 919
Mph1103I ATGCAT 1 cut(s) 967
MroI TCCGGA 1 cut(s) 1048
MslI CAYNNNNRTG 1 cut(s) 507
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 2 cut(s) 839, 1049
MunI CAATTG 1 cut(s) 1235
Mva1269I GAATGC 1 cut(s) 1141
MvnI CGCG 1 cut(s) 1219
MwoI GCNNNNNNNGC 1 cut(s) 289
NcoI CCATGG 1 cut(s) 85
NdeI CATATG 1 cut(s) 606
NdeII GATC 3 cut(s) 54, 1561, 1597
NlaIII CATG 7 cut(s) 89, 176, 397, 1000, 1040, 1510, 1557
NmuCI GTSAC 3 cut(s) 401, 1372, 1578
NsiI ATGCAT 1 cut(s) 967
NspI RCATGY 2 cut(s) 176, 1557
OliI CACNNNNGTG 1 cut(s) 507
PaeI GCATGC 1 cut(s) 176
PagI TCATGA 1 cut(s) 1506
PceI AGGCCT 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 1585
PctI GAATGC 1 cut(s) 1141
PfeI GAWTC 5 cut(s) 182, 368, 422, 825, 1487
PflMI CCANNNNNTGG 1 cut(s) 36
PleI GAGTC 1 cut(s) 1113
PmaCI CACGTG 1 cut(s) 1010
PmlI CACGTG 1 cut(s) 1010
PpsI GAGTC 1 cut(s) 1113
Ppu21I YACGTR 1 cut(s) 1010
PshBI ATTAAT 1 cut(s) 1182
PsiI TTATAA 2 cut(s) 848, 1058
Psp124BI GAGCTC 1 cut(s) 97
PspCI CACGTG 1 cut(s) 1010
PspFI CCCAGC 2 cut(s) 1094, 1514
PspPI GGNCC 1 cut(s) 941
PstNI CAGNNNCTG 1 cut(s) 1631
PsuI RGATCY 1 cut(s) 1561
RsaI GTAC 2 cut(s) 326, 536
RsaNI GTAC 2 cut(s) 325, 535
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 1585
Sau3AI GATC 3 cut(s) 54, 1561, 1597
Sau96I GGNCC 1 cut(s) 941
SchI GAGTC 1 cut(s) 1114
SduI GDGCHC 2 cut(s) 97, 1468
SfaNI GCATC 1 cut(s) 1509
SfcI CTRYAG 2 cut(s) 1208, 1482
SinI GGWCC 1 cut(s) 941
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
SphI GCATGC 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 902
SspI AATATT 1 cut(s) 646
SstI GAGCTC 1 cut(s) 97
StuI AGGCCT 1 cut(s) 902
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 5 cut(s) 77, 407, 506, 1483, 1627
TaiI ACGT 4 cut(s) 326, 860, 1012, 1169
TaqI TCGA 7 cut(s) 43, 97, 231, 425, 655, 828, 1090
TatI WGTACW 1 cut(s) 534
TfiI GAWTC 5 cut(s) 182, 368, 422, 825, 1487
TscAI CASTG 4 cut(s) 509, 709, 1486, 1632
TseFI GTSAC 3 cut(s) 401, 1372, 1578
Tsp45I GTSAC 3 cut(s) 401, 1372, 1578
TspDTI ATGAA 6 cut(s) 938, 1025, 1148, 1421, 1523, 1542
TspRI CASTG 4 cut(s) 509, 709, 1486, 1632
Van91I CCANNNNNTGG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 941
VspI ATTAAT 1 cut(s) 1182
XagI CCTNNNNNAGG 1 cut(s) 1508
XapI RAATTY 1 cut(s) 1567
XceI RCATGY 2 cut(s) 176, 1557
Zsp2I ATGCAT 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.