Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8402659.1

Orthogroup ID

OG0010083

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 1285

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8402659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1246 bp

atgggtcttcaagattcggctaaattggtgtttgattacatgaggattgatgggctttcgcccgatgaatcagttgttgagtttttggtttcatcatgtgctcaaatgagtaggttggatcttgcagagaagattcttgatgaggttcattgcagtgagattaggctgtcgagctttgtgtacaataacttgttcaatgtgctggttaaacagaatcaagtagatgaggctgtttgcttgttcagaaagtatgtggggtcgcattgttgtccggatagttggatgtttaatattttgattcgaggtttatgcagaactggagcaattgataaagcttttgagtttttcagtgatatggggagttttggttgttcccctgatgttgttacgtataacacactaattagtggactatgtagagctaatggggtagatagagggtgtgatttactcagggaggttcagtcaagaagtgagctttcgccggatgttataacttttacgtcggttatatcaggctattgcaaattgggtagaatggaggaggcctctgctatttttgatgagatgattgattgtggagttagaccaactgcagttacttttaatgcactgattgatggatttggtaaagcaggtgacatgagttctgcatttgctatgtatgagaatatgctcttccatggtcatcgtgcggatgtgattaccttcacttccctaattgatggctattgtcgagctgggcacctgagccatgggttacagctctggcatgagatgaatgcaaaaaatgtgtctcctactgcatatactttctctgtgcttattaatgctttgtgcaaggagaatagactgcgtgaggcacgtgatttactgagggaactgaagtggagtaatgttgttccaaaaccttttatatataaccctgtggtagacggattttgcaaggctggtaatgttgatgaggcgaatttgattgtggcagagatggaggagaagagatgtacccctgataaagtgacattcaccattcttatcctagggaattctatgaaagggagaatgactgaggcaattggcaattttaataagatgttgtccatcggttgtgccccagataaaatcaccgtagattctttgatatcttgcctctccaaggctgggatgcccagtgaagcccgccgcatcaagaaaatcgcatatgaggacctgaatttgggggcgtcatctatgggaagacctcatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

415

Amino Acids

46.0

Weight (kDa)

5.59

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06000 AT2G06000
fragaria_vesca	FvH4_5g31880
malus_domestica	MD02G1091700.v1.1 MD15G1217800.v1.1
prunus_persica	Prupe.7G198600_v2.0.a1
pyrus_communis	pycom02g07300 pycom15g19340 pycom15g33430 pycom15g33440
rosa_chinensis	RchiOBHm_Chr7g0227901
rosa_laevigata	RLG00000001605
rosa_multiflora	Rmu_co8402659.1_g000001 Rmu_sc0000347.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231780
rosa_rugosa	Rorug07G0244100
rosa_samantha	Rh7AG397500 Rh7BG379100 Rh7CG415700 Rh7DG393000
rosa_wichuraiana	Rw7G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AarI	CACCTGC	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	933
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	3 cut(s)	695, 1180, 1183
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	970, 1045, 1213
AcuI	CTGAAG	1 cut(s)	905
AcvI	CACGTG	1 cut(s)	866
AcyI	GRCGYC	1 cut(s)	1223
AfaI	GTAC	2 cut(s)	182, 1006
AfiI	CCNNNNNNNGG	3 cut(s)	1156, 1161, 1216
AgsI	TTSAA	2 cut(s)	11, 196
AluBI	AGCT	6 cut(s)	174, 335, 422, 478, 740, 766
AluI	AGCT	6 cut(s)	174, 335, 422, 478, 740, 766
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	1 cut(s)	546
ApoI	RAATTY	3 cut(s)	970, 1045, 1213
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
AseI	ATTAAT	1 cut(s)	828
AspA2I	CCTAGG	1 cut(s)	1039
AspS9I	GGNCC	1 cut(s)	1207
AsuHPI	GGTGA	3 cut(s)	650, 1018, 1117
AvaII	GGWCC	1 cut(s)	1207
AvrII	CCTAGG	1 cut(s)	1039
BaeGI	GKGCMC	2 cut(s)	747, 1114
BanI	GGYRCC	1 cut(s)	744
BbrPI	CACGTG	1 cut(s)	866
Bbv12I	GWGCWC	1 cut(s)	103
BccI	CCATC	5 cut(s)	44, 614, 719, 982, 1109
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	1 cut(s)	1040
BfmI	CTRYAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	626
BisI	GCNGC	1 cut(s)	1183
BlnI	CCTAGG	1 cut(s)	1039
BlsI	GCNGC	1 cut(s)	1184
Bme18I	GGWCC	1 cut(s)	1207
BmgT120I	GGNCC	1 cut(s)	1207
BmiI	GGNNCC	1 cut(s)	746
BmrI	ACTGGG	1 cut(s)	1164
BmsI	GCATC	2 cut(s)	1155, 1194
BmuI	ACTGGG	1 cut(s)	1164
BplI	GAGNNNNNCTC	2 cut(s)	533, 565
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	749
BsaAI	YACGTR	2 cut(s)	390, 866
BsaHI	GRCGYC	1 cut(s)	1223
BsaJI	CCNNGG	4 cut(s)	682, 754, 1039, 1155
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	4 cut(s)	352, 382, 449, 479
Bsc4I	CCNNNNNNNGG	3 cut(s)	1156, 1161, 1216
Bse1I	ACTGG	2 cut(s)	322, 1170
Bse3DI	GCAATG	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	682, 754, 1039, 1155
BseGI	GGATG	4 cut(s)	288, 493, 703, 1170
BseLI	CCNNNNNNNGG	3 cut(s)	1156, 1161, 1216
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	4 cut(s)	466, 740, 866, 1059
BseNI	ACTGG	2 cut(s)	322, 1170
BseRI	GAGGAG	2 cut(s)	557, 1007
BseSI	GKGCMC	2 cut(s)	747, 1114
BseYI	CCCAGC	2 cut(s)	740, 1160
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	1 cut(s)	744
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	272, 485
BslI	CCNNNNNNNGG	3 cut(s)	1156, 1161, 1216
BsmAI	GTCTC	1 cut(s)	801
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	1 cut(s)	548
Bsp1286I	GDGCHC	3 cut(s)	103, 747, 1114
Bsp13I	TCCGGA	1 cut(s)	271
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	118
Bsp19I	CCATGG	2 cut(s)	682, 754
BspACI	CCGC	3 cut(s)	695, 1180, 1183
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	4 cut(s)	465, 741, 867, 1060
BspEI	TCCGGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	746
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	1 cut(s)	126
BspQI	GCTCTTC	1 cut(s)	683
BspT107I	GGYRCC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	148
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	322, 1170
BssECI	CCNNGG	4 cut(s)	682, 754, 1039, 1155
BssMI	GATC	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	1223
BssT1I	CCWWGG	4 cut(s)	682, 754, 1039, 1155
Bst4CI	ACNGT	1 cut(s)	1129
Bst6I	CTCTTC	2 cut(s)	683, 992
BstACI	GRCGYC	1 cut(s)	1223
BstAUI	TGTACA	1 cut(s)	180
BstBAI	YACGTR	2 cut(s)	390, 866
BstC8I	GCNNGC	1 cut(s)	1180
BstDEI	CTNAG	4 cut(s)	452, 749, 875, 1068
BstDSI	CCRYGG	2 cut(s)	682, 754
BstENI	CCTNNNNNAGG	1 cut(s)	1154
BstF5I	GGATG	4 cut(s)	288, 493, 703, 1170
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	2 cut(s)	747, 1114
BstSNI	TACGTA	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	548
BtgI	CCRYGG	2 cut(s)	682, 754
BtsCI	GGATG	4 cut(s)	288, 493, 703, 1170
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	4 cut(s)	160, 355, 611, 1177
BveI	ACCTGC	1 cut(s)	626
Cac8I	GCNNGC	1 cut(s)	1180
Cfr13I	GGNCC	1 cut(s)	1207
CseI	GACGC	1 cut(s)	1212
Csp6I	GTAC	2 cut(s)	181, 1005
CviAII	CATG	6 cut(s)	40, 96, 643, 683, 755, 773
CviQI	GTAC	2 cut(s)	181, 1005
DdeI	CTNAG	4 cut(s)	452, 749, 875, 1068
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	683, 992
EarI	CTCTTC	2 cut(s)	683, 992
Eco105I	TACGTA	1 cut(s)	390
Eco130I	CCWWGG	4 cut(s)	682, 754, 1039, 1155
Eco147I	AGGCCT	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	1143
Eco47I	GGWCC	1 cut(s)	1207
Eco57I	CTGAAG	1 cut(s)	905
Eco72I	CACGTG	1 cut(s)	866
EcoNI	CCTNNNNNAGG	1 cut(s)	1154
EcoO109I	RGGNCCY	1 cut(s)	1207
EcoRI	GAATTC	1 cut(s)	1045
EcoRV	GATATC	1 cut(s)	1143
EcoT14I	CCWWGG	4 cut(s)	682, 754, 1039, 1155
ErhI	CCWWGG	4 cut(s)	682, 754, 1039, 1155
FaeI	CATG	6 cut(s)	43, 99, 646, 686, 758, 776
FatI	CATG	6 cut(s)	39, 95, 642, 682, 754, 772
FauI	CCCGC	1 cut(s)	1187
FauNDI	CATATG	1 cut(s)	1201
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	1 cut(s)	1183
FokI	GGATG	4 cut(s)	295, 500, 710, 1177
Fsp4HI	GCNGC	1 cut(s)	1183
FspBI	CTAG	1 cut(s)	1040
GluI	GCNGC	1 cut(s)	1183
GsaI	CCCAGC	2 cut(s)	744, 1164
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	272, 485
HgaI	GACGC	1 cut(s)	1212
Hin1I	GRCGYC	1 cut(s)	1223
Hin1II	CATG	6 cut(s)	43, 99, 646, 686, 758, 776
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	6 cut(s)	14, 68, 133, 214, 298, 1133
HpaII	CCGG	2 cut(s)	272, 485
HphI	GGTGA	3 cut(s)	650, 1018, 1117
Hpy166II	GTNNAC	3 cut(s)	181, 410, 934
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	5 cut(s)	11, 137, 272, 468, 1189
Hpy8I	GTNNAC	3 cut(s)	181, 410, 934
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	718
HpyCH4III	ACNGT	1 cut(s)	1129
HpyCH4IV	ACGT	3 cut(s)	389, 503, 865
HpyF3I	CTNAG	4 cut(s)	452, 749, 875, 1068
HpySE526I	ACGT	3 cut(s)	389, 503, 865
Hsp92I	GRCGYC	1 cut(s)	1223
Hsp92II	CATG	6 cut(s)	43, 99, 646, 686, 758, 776
Kpn2I	TCCGGA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	683
LmnI	GCTCC	1 cut(s)	320
LweI	GCATC	2 cut(s)	1155, 1194
MaeI	CTAG	1 cut(s)	1040
MaeII	ACGT	3 cut(s)	389, 503, 865
MaeIII	GTNAC	5 cut(s)	385, 598, 638, 759, 1018
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	142, 670, 1009
MfeI	CAATTG	2 cut(s)	324, 1074
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	3 cut(s)	103, 747, 1114
MmeI	TCCRAC	2 cut(s)	96, 260
MroI	TCCGGA	1 cut(s)	271
MseI	TTAA	5 cut(s)	207, 288, 606, 828, 1086
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	2 cut(s)	272, 485
MunI	CAATTG	2 cut(s)	324, 1074
Mva1269I	GAATGC	1 cut(s)	787
NcoI	CCATGG	2 cut(s)	682, 754
NdeI	CATATG	1 cut(s)	1201
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	6 cut(s)	43, 99, 646, 686, 758, 776
NlaIV	GGNNCC	1 cut(s)	746
NmuCI	GTSAC	2 cut(s)	638, 1018
PaqCI	CACCTGC	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	683
PctI	GAATGC	1 cut(s)	787
PfeI	GAWTC	6 cut(s)	14, 68, 133, 214, 298, 1133
PkrI	GCNGC	1 cut(s)	1184
PmaCI	CACGTG	1 cut(s)	866
PmlI	CACGTG	1 cut(s)	866
Ppu21I	YACGTR	2 cut(s)	390, 866
PpuMI	RGGWCCY	1 cut(s)	1207
PshBI	ATTAAT	1 cut(s)	828
PsiI	TTATAA	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	1207
PspCI	CACGTG	1 cut(s)	866
PspFI	CCCAGC	2 cut(s)	740, 1160
PspN4I	GGNNCC	1 cut(s)	746
PspPI	GGNCC	1 cut(s)	1207
PspPPI	RGGWCCY	1 cut(s)	1207
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	2 cut(s)	182, 1006
RsaNI	GTAC	2 cut(s)	181, 1005
RseI	CAYNNNNRTG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	683
SaqAI	TTAA	5 cut(s)	207, 288, 606, 828, 1086
SatI	GCNGC	1 cut(s)	1183
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	1207
SduI	GDGCHC	3 cut(s)	103, 747, 1114
SfaNI	GCATC	2 cut(s)	1155, 1194
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	1207
SmiMI	CAYNNNNRTG	1 cut(s)	153
SnaBI	TACGTA	1 cut(s)	390
SseBI	AGGCCT	1 cut(s)	548
SsiI	CCGC	3 cut(s)	695, 1180, 1183
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	1040
StuI	AGGCCT	1 cut(s)	548
StyI	CCWWGG	4 cut(s)	682, 754, 1039, 1155
TaaI	ACNGT	1 cut(s)	1129
TaiI	ACGT	3 cut(s)	392, 506, 868
TaqI	TCGA	3 cut(s)	170, 301, 736
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	1185
TfiI	GAWTC	6 cut(s)	14, 68, 133, 214, 298, 1133
Tru1I	TTAA	5 cut(s)	207, 288, 606, 828, 1086
Tru9I	TTAA	5 cut(s)	207, 288, 606, 828, 1086
TscAI	CASTG	4 cut(s)	160, 355, 618, 1177
TseFI	GTSAC	2 cut(s)	638, 1018
Tsp45I	GTSAC	2 cut(s)	638, 1018
TspDTI	ATGAA	5 cut(s)	81, 81, 137, 794, 1067
TspGWI	ACGGA	1 cut(s)	951
TspRI	CASTG	4 cut(s)	160, 355, 618, 1177
VpaK11BI	GGWCC	1 cut(s)	1207
VspI	ATTAAT	1 cut(s)	828
XagI	CCTNNNNNAGG	1 cut(s)	1154
XapI	RAATTY	3 cut(s)	970, 1045, 1213
XmaJI	CCTAGG	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	1 cut(s)	1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.