MD02G1091700.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010083
Physical Location & Seq
Forward (+)
7272118 .. 7273899
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1091700.v1.1.491

Sequence Viewer

Length: 1782 bp
ATGAAGACCCAGGATCCCAATCCGAATTCCGGCCGACCCGTGAGAAAATCCGGCCAATCAACCGGAACCCAGAACAGGATTTTCATTGAAAACATCTACGAGAGCAGAGCTGAGCCGCGTGATGGCGCGGCGGTGCAGATGACCCTCCTGTTCTTCACAGCCCGTCCGACCTTCTGGGTTCGAGCCTCCAAGATCGCCATTTCTCATTTCCACAGCCTCGCCCACGGCGGAGCTCGGCCGCGCCCGCTTTACGACTTTGAGGTAACGTCAAACCCAGAGGTTTGGTTTGTAAAAGTTGTTTGCACTCTGTTTCTTCGCTCGCATTCGTTGGATTTGGGTTATCTTAGTAAGAACCTTTCGCCTTCGATTGCTTTTGAGGTTATTAAGCGGTTGAACAATCCGAAATTGGGGTTGAAATTCTTTGAGCTCAGTAGGGTTAGTCTGAGTGTTAAGCATAGTGTATGGACTTACAATTTTCTTTTGAGGTCTCTGTGTCAAATGGGGCTTCAAGATTCTGCTAAATTGGTGTTTGATTACATGAGGAGTGACGGGCATACACCCGATGATTCGGTTGTAGAACTCTTGGTGTCGTCGTATGCGCAGATGGGCAAGTTGGATGATGCTGAGAAGTTTCTTAATGAGGCTCATTGTGGTGAGATTAGATTGCCTCCTTTCGTGTACAATAACTTGTTCAATGTGTTGGTTAAACAGAATAAAGTAGATGAGGCTGTTTGCTTGTTTAGAAAGCATATGGGGTCGCATGGTTGCCCGGATAACTGGACTTTCAATATTCTAATTCGAGGTTTATGCAGAGTTGGAGAAATTGACAAGGCTTTTGAGTTGTTCAGTGATATGGGGAGTTCTGGTTGCTACCCCGATATAGTTACATATAACACACTAATTAGTGGACTTTGTAGGGCTAATGAGGTAGATAGGGGATTTCAATTACTTAAAGAGGTTCAATCAAGAATCGAACTTTCACCTGATGTTATAACTTTTACGTCAGTCATATCAGGATATTGCAAGTTGGGTAAGATGGAGGAGGCCTCTGTTCTTTTTGATGAGATGATTAATGCCGGAGTTAGACCAACTTCTGTTACTTTCAATGCAATGATTGATGGATTTGGTAAGACTGGCAACATGGGTTCTGCACTTGCTATGCATCAGAAAATGCTCTTTCATGGTTATCATTCAGACGTTTTTACCTTCACTTCCCTAATTGATGGCCATTGTCGAGCTGGGAAACTGAGTCAGGGACTAAAGCTTTGGCAGGAGATGAATGGGAAAAATGTGTCTCCAAGTGCGTATACTTTCTCTGTCCTTATTAATGCTTTGTGCAAGGAGAGTAGACTACATGAAGCACGTGATTTCTTGAGGCAATTAAAGTGGAGTAATGTGGTTCCGAAACCTTTTATATATAACCCTGTGATAGATGGATTCTGTAAGGCTGGCAATGTTGATGAGGCAAACGCCATTGTGGCAGAGATGGAAGAGAAGAGATGCAGCCCTGATAAAGTGACATTTACCATTCTCATACTCGGGAATTGTATGAAAGGGAGGATGTCCGAGGCAATTAGCAATTTTAAAAAGATGTTGGCAATTGGTTGTGCCCCAGACAGCATCACCGTAAACTCTTTGACATCTTGTCTCATGAAGGCTGGGATGCCTAATGAAGCCCATCACATTAAGCAAATTGCATATAATGACCTCAATTCGGGCATGTCACCTTCAGGAAGAACTGATCATATGAAAGCAAATGCACAAATTCCAGTGGCTGTTTGA

Protein Analysis

594

Amino Acids

66.12

Weight (kDa)

8.56

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 196 - 320 1e-05 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 225 - 271 9.1e-11 PPR repeat family
PPR_1 PF12854 256 - 285 5e-12 PPR repeat
PPR_2 PF13041 257 - 306 5.2e-19 PPR repeat family
PPR_3 PF13812 258 - 302 6.1e-06 Pentatricopeptide repeat domain
PPR PF01535 261 - 290 2.7e-08 PPR repeat
PPR_1 PF12854 289 - 319 4e-13 PPR repeat
PPR_2 PF13041 292 - 321 4.5e-07 PPR repeat family
PPR_3 PF13812 317 - 377 3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 326 - 356 2.3e-12 PPR repeat
PPR_2 PF13041 328 - 377 4.6e-17 PPR repeat family
PPR PF01535 331 - 361 1.6e-09 PPR repeat
PPR_1 PF12854 360 - 391 6.2e-06 PPR repeat
PPR_2 PF13041 363 - 412 1.7e-12 PPR repeat family
PPR PF01535 366 - 395 9.3e-06 PPR repeat
PPR_3 PF13812 390 - 445 7.7e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 395 - 426 3.6e-09 PPR repeat
PPR_2 PF13041 399 - 447 1.6e-16 PPR repeat family
PPR PF01535 401 - 430 2.6e-06 PPR repeat
PPR_long PF17177 416 - 520 3.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 429 - 460 1.9e-07 PPR repeat
PPR_1 PF12854 466 - 497 4.5e-08 PPR repeat
PPR_3 PF13812 470 - 512 9.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 471 - 516 7.6e-14 PPR repeat family
PPR PF01535 472 - 501 5.9e-06 PPR repeat
PPR_1 PF12854 499 - 531 1.1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 992
Acc16I TGCGCA 1 cut(s) 600
AccI GTMKAC 2 cut(s) 1307, 1348
AccII CGCG 3 cut(s) 118, 128, 241
AciI CCGC 7 cut(s) 116, 128, 131, 228, 239, 245, 388
AclWI GGATC 2 cut(s) 8, 21
AcoI YGGCCR 4 cut(s) 31, 52, 236, 1225
AcsI RAATTY 3 cut(s) 25, 416, 1764
AcuI CTGAAG 1 cut(s) 1713
AcvI CACGTG 1 cut(s) 1364
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 5 cut(s) 29, 75, 122, 407, 1714
AgsI TTSAA 9 cut(s) 89, 394, 415, 509, 694, 787, 944, 962, 1105
AhdI GACNNNNNGTC 1 cut(s) 1644
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 5 cut(s) 110, 233, 427, 1238, 1264
AluI AGCT 5 cut(s) 110, 233, 427, 1238, 1264
Alw21I GWGCWC 2 cut(s) 235, 429
Alw26I GTCTC 3 cut(s) 492, 1299, 1652
AlwI GGATC 2 cut(s) 8, 21
AlwNI CAGNNNCTG 1 cut(s) 1775
Ama87I CYCGRG 1 cut(s) 1538
AoxI GGCC 5 cut(s) 31, 52, 236, 1044, 1225
ApeKI GCWGC 1 cut(s) 1503
ApoI RAATTY 3 cut(s) 25, 416, 1764
ArsI GACNNNNNNTTYG 4 cut(s) 818, 850, 1248, 1280
AseI ATTAAT 2 cut(s) 1071, 1326
AspLEI GCGC 3 cut(s) 128, 243, 601
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 4 cut(s) 665, 972, 1615, 1716
AvaI CYCGRG 1 cut(s) 1538
BaeGI GKGCMC 1 cut(s) 1612
BalI TGGCCA 1 cut(s) 1227
BamHI GGATCC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 235, 429
BbrPI CACGTG 1 cut(s) 1364
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 235, 429
BbvI GCAGC 1 cut(s) 1515
BccI CCATC 8 cut(s) 116, 598, 1030, 1112, 1217, 1427, 1480, 1686
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 789, 823
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 1 cut(s) 1741
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 3 cut(s) 492, 1299, 1652
BglI GCCNNNNNGGC 1 cut(s) 1478
BisI GCNGC 4 cut(s) 116, 129, 239, 1504
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 4 cut(s) 117, 130, 240, 1505
Bme1390I CCNGG 2 cut(s) 11, 770
BmeRI GACNNNNNGTC 1 cut(s) 1644
BmeT110I CYCGRG 1 cut(s) 1538
BmiI GGNNCC 3 cut(s) 15, 67, 1401
BmrFI CCNGG 2 cut(s) 11, 770
BmsI GCATC 5 cut(s) 610, 1171, 1490, 1629, 1653
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 1031, 1063
Bpu1102I GCTNAGC 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 1393
BpuMI CCSGG 1 cut(s) 770
BsaAI YACGTR 1 cut(s) 1364
BsaBI GATNNNNATC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 9, 223, 1566
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 850, 880
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 75, 122, 407, 1714
Bse1I ACTGG 3 cut(s) 782, 1138, 1769
Bse3DI GCAATG 2 cut(s) 1116, 1459
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 3 cut(s) 9, 223, 1566
BseGI GGATG 3 cut(s) 622, 1566, 1668
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 5 cut(s) 29, 75, 122, 407, 1714
BseMI GCAATG 2 cut(s) 1116, 1459
BseMII CTCAG 5 cut(s) 102, 434, 442, 615, 1238
BseNI ACTGG 3 cut(s) 782, 1138, 1769
BseRI GAGGAG 2 cut(s) 556, 1055
BseSI GKGCMC 1 cut(s) 1612
BseX3I CGGCCG 2 cut(s) 31, 236
BseXI GCAGC 1 cut(s) 1515
BseYI CCCAGC 2 cut(s) 1238, 1658
BsgI GTGCAG 2 cut(s) 155, 1134
Bsh1236I CGCG 3 cut(s) 118, 128, 241
Bsh1285I CGRYCG 2 cut(s) 34, 239
BshFI GGCC 5 cut(s) 33, 54, 238, 1046, 1227
BsiEI CGRYCG 2 cut(s) 34, 239
BsiHKAI GWGCWC 2 cut(s) 235, 429
BsiHKCI CYCGRG 1 cut(s) 1538
BsiSI CCGG 5 cut(s) 30, 51, 63, 770, 1077
BslFI GGGAC 1 cut(s) 1269
BslI CCNNNNNNNGG 5 cut(s) 29, 75, 122, 407, 1714
BsmAI GTCTC 3 cut(s) 492, 1299, 1652
BsmFI GGGAC 1 cut(s) 1269
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 5 cut(s) 33, 54, 238, 1046, 1227
Bso31I GGTCTC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 1538
Bsp1286I GDGCHC 3 cut(s) 235, 429, 1612
Bsp1407I TGTACA 1 cut(s) 678
Bsp143I GATC 3 cut(s) 13, 192, 1741
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 7 cut(s) 116, 128, 131, 228, 239, 245, 388
BspANI GGCC 5 cut(s) 33, 54, 238, 1046, 1227
BspCNI CTCAG 5 cut(s) 103, 435, 441, 616, 1239
BspFNI CGCG 3 cut(s) 118, 128, 241
BspHI TCATGA 1 cut(s) 1650
BspLI GGNNCC 3 cut(s) 15, 67, 1401
BspPI GGATC 2 cut(s) 8, 21
BspTNI GGTCTC 1 cut(s) 492
BsrDI GCAATG 2 cut(s) 1116, 1459
BsrGI TGTACA 1 cut(s) 678
BsrI ACTGG 3 cut(s) 782, 1138, 1769
BssECI CCNNGG 3 cut(s) 9, 223, 1566
BssMI GATC 3 cut(s) 13, 192, 1741
BssNAI GTATAC 1 cut(s) 1308
Bst1107I GTATAC 1 cut(s) 1308
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 1627
Bst6I CTCTTC 2 cut(s) 1485, 1490
BstAUI TGTACA 1 cut(s) 678
BstBAI YACGTR 1 cut(s) 1364
BstC8I GCNNGC 3 cut(s) 245, 320, 1450
BstDEI CTNAG 6 cut(s) 111, 344, 428, 443, 624, 1247
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 622, 1566, 1668
BstFNI CGCG 3 cut(s) 118, 128, 241
BstHHI GCGC 3 cut(s) 128, 243, 601
BstKTI GATC 3 cut(s) 16, 195, 1744
BstMAI GTCTC 3 cut(s) 492, 1299, 1652
BstMBI GATC 3 cut(s) 13, 192, 1741
BstMCI CGRYCG 2 cut(s) 34, 239
BstMWI GCNNNNNNNGC 2 cut(s) 244, 1478
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 1723
BstSCI CCNGG 2 cut(s) 9, 768
BstSLI GKGCMC 1 cut(s) 1612
BstUI CGCG 3 cut(s) 118, 128, 241
BstV1I GCAGC 1 cut(s) 1515
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 282
BstYI RGATCY 1 cut(s) 13
BstZ17I GTATAC 1 cut(s) 1308
BstZI CGGCCG 2 cut(s) 31, 236
BsuRI GGCC 5 cut(s) 33, 54, 238, 1046, 1227
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 622, 1566, 1668
BtsIMutI CAGTG 2 cut(s) 853, 1776
Cac8I GCNNGC 3 cut(s) 245, 320, 1450
CaiI CAGNNNCTG 1 cut(s) 1775
CciI TCATGA 1 cut(s) 1650
CfoI GCGC 3 cut(s) 128, 243, 601
Csp6I GTAC 1 cut(s) 679
CspCI CAANNNNNGTGG 2 cut(s) 1367, 1402
CviAII CATG 7 cut(s) 538, 761, 1141, 1181, 1355, 1651, 1720
CviQI GTAC 1 cut(s) 679
DdeI CTNAG 6 cut(s) 111, 344, 428, 443, 624, 1247
DpnI GATC 3 cut(s) 15, 194, 1743
DpnII GATC 3 cut(s) 13, 192, 1741
DraI TTTAAA 1 cut(s) 1585
DriI GACNNNNNGTC 1 cut(s) 1644
EaeI YGGCCR 4 cut(s) 31, 52, 236, 1225
EagI CGGCCG 2 cut(s) 31, 236
Eam1104I CTCTTC 2 cut(s) 1485, 1490
Eam1105I GACNNNNNGTC 1 cut(s) 1644
EarI CTCTTC 2 cut(s) 1485, 1490
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 2 cut(s) 233, 427
EclXI CGGCCG 2 cut(s) 31, 236
Eco147I AGGCCT 1 cut(s) 1046
Eco24I GRGCYC 2 cut(s) 235, 429
Eco31I GGTCTC 1 cut(s) 492
Eco52I CGGCCG 2 cut(s) 31, 236
Eco53kI GAGCTC 2 cut(s) 233, 427
Eco57I CTGAAG 1 cut(s) 1713
Eco72I CACGTG 1 cut(s) 1364
Eco88I CYCGRG 1 cut(s) 1538
EcoICRI GAGCTC 2 cut(s) 233, 427
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 1164
EcoT38I GRGCYC 2 cut(s) 235, 429
FaeI CATG 7 cut(s) 541, 764, 1144, 1184, 1358, 1654, 1723
FaqI GGGAC 1 cut(s) 1269
FatI CATG 7 cut(s) 537, 760, 1140, 1180, 1354, 1650, 1719
FauI CCCGC 1 cut(s) 252
FauNDI CATATG 2 cut(s) 750, 1746
FbaI TGATCA 1 cut(s) 1741
FblI GTMKAC 2 cut(s) 1307, 1348
Fnu4HI GCNGC 4 cut(s) 116, 129, 239, 1504
FokI GGATG 3 cut(s) 629, 1573, 1675
FriOI GRGCYC 2 cut(s) 235, 429
Fsp4HI GCNGC 4 cut(s) 116, 129, 239, 1504
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 3 cut(s) 127, 242, 600
GluI GCNGC 4 cut(s) 116, 129, 239, 1504
GsaI CCCAGC 2 cut(s) 1242, 1662
HaeIII GGCC 5 cut(s) 33, 54, 238, 1046, 1227
HapII CCGG 5 cut(s) 30, 51, 63, 770, 1077
HhaI GCGC 3 cut(s) 128, 243, 601
Hin1II CATG 7 cut(s) 541, 764, 1144, 1184, 1358, 1654, 1723
Hin6I GCGC 3 cut(s) 126, 241, 599
HinP1I GCGC 3 cut(s) 126, 241, 599
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 5 cut(s) 512, 566, 969, 1249, 1437
HpaII CCGG 5 cut(s) 30, 51, 63, 770, 1077
HphI GGTGA 4 cut(s) 665, 972, 1615, 1716
Hpy166II GTNNAC 5 cut(s) 679, 908, 1308, 1349, 1630
Hpy188I TCNGA 8 cut(s) 24, 168, 402, 444, 1167, 1195, 1404, 1567
Hpy188III TCNNGA 7 cut(s) 509, 966, 1014, 1372, 1540, 1651, 1731
Hpy8I GTNNAC 5 cut(s) 679, 908, 1308, 1349, 1630
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 5 cut(s) 181, 372, 1216, 1648, 1737
HpyCH4III ACNGT 1 cut(s) 1627
HpyCH4IV ACGT 4 cut(s) 266, 1001, 1197, 1363
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 1478
HpyF3I CTNAG 6 cut(s) 111, 344, 428, 443, 624, 1247
HpySE526I ACGT 4 cut(s) 266, 1001, 1197, 1363
Hsp92II CATG 7 cut(s) 541, 764, 1144, 1184, 1358, 1654, 1723
HspAI GCGC 3 cut(s) 126, 241, 599
Ksp22I TGATCA 1 cut(s) 1741
Kzo9I GATC 3 cut(s) 13, 192, 1741
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 1 cut(s) 1515
LweI GCATC 5 cut(s) 610, 1171, 1490, 1629, 1653
MaeII ACGT 4 cut(s) 266, 1001, 1197, 1363
MaeIII GTNAC 6 cut(s) 262, 545, 883, 1096, 1516, 1722
MalI GATC 3 cut(s) 15, 194, 1743
MboI GATC 3 cut(s) 13, 192, 1741
MboII GAAGA 6 cut(s) 16, 145, 305, 1502, 1507, 1746
MfeI CAATTG 1 cut(s) 1599
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 3 cut(s) 235, 429, 1612
MlsI TGGCCA 1 cut(s) 1227
MluNI TGGCCA 1 cut(s) 1227
MlyI GAGTC 1 cut(s) 1258
MmeI TCCRAC 4 cut(s) 191, 309, 594, 796
Mox20I TGGCCA 1 cut(s) 1227
Mph1103I ATGCAT 1 cut(s) 1164
MscI TGGCCA 1 cut(s) 1227
MslI CAYNNNNRTG 1 cut(s) 651
Msp20I TGGCCA 1 cut(s) 1227
MspI CCGG 5 cut(s) 30, 51, 63, 770, 1077
MspR9I CCNGG 2 cut(s) 11, 770
MunI CAATTG 1 cut(s) 1599
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 3 cut(s) 118, 128, 241
MwoI GCNNNNNNNGC 2 cut(s) 244, 1478
NciI CCSGG 1 cut(s) 770
NdeI CATATG 2 cut(s) 750, 1746
NdeII GATC 3 cut(s) 13, 192, 1741
NlaIII CATG 7 cut(s) 541, 764, 1144, 1184, 1358, 1654, 1723
NlaIV GGNNCC 3 cut(s) 15, 67, 1401
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 3 cut(s) 545, 1516, 1722
NsbI TGCGCA 1 cut(s) 600
NsiI ATGCAT 1 cut(s) 1164
NspI RCATGY 1 cut(s) 1723
PagI TCATGA 1 cut(s) 1650
PceI AGGCCT 1 cut(s) 1046
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 4 cut(s) 512, 566, 969, 1437
PkrI GCNGC 4 cut(s) 117, 130, 240, 1505
PleI GAGTC 1 cut(s) 1257
PmaCI CACGTG 1 cut(s) 1364
PmlI CACGTG 1 cut(s) 1364
PpsI GAGTC 1 cut(s) 1257
Ppu21I YACGTR 1 cut(s) 1364
PshBI ATTAAT 2 cut(s) 1071, 1326
PsiI TTATAA 1 cut(s) 992
Psp124BI GAGCTC 2 cut(s) 235, 429
Psp6I CCWGG 1 cut(s) 9
PspCI CACGTG 1 cut(s) 1364
PspFI CCCAGC 2 cut(s) 1238, 1658
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 15, 67, 1401
PstNI CAGNNNCTG 1 cut(s) 1775
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
RseI CAYNNNNRTG 1 cut(s) 651
SacI GAGCTC 2 cut(s) 235, 429
SatI GCNGC 4 cut(s) 116, 129, 239, 1504
Sau3AI GATC 3 cut(s) 13, 192, 1741
SchI GAGTC 1 cut(s) 1258
ScrFI CCNGG 2 cut(s) 11, 770
SduI GDGCHC 3 cut(s) 235, 429, 1612
SfaNI GCATC 5 cut(s) 610, 1171, 1490, 1629, 1653
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 1372
SmoI CTYRAG 1 cut(s) 1372
SseBI AGGCCT 1 cut(s) 1046
SsiI CCGC 7 cut(s) 116, 128, 131, 228, 239, 245, 388
SspI AATATT 1 cut(s) 790
SstI GAGCTC 2 cut(s) 235, 429
StuI AGGCCT 1 cut(s) 1046
StyD4I CCNGG 2 cut(s) 9, 768
TaaI ACNGT 1 cut(s) 1627
TaiI ACGT 4 cut(s) 269, 1004, 1200, 1366
TaqI TCGA 5 cut(s) 181, 365, 799, 972, 1234
TatI WGTACW 1 cut(s) 678
TauI GCSGC 3 cut(s) 118, 131, 241
TfiI GAWTC 4 cut(s) 512, 566, 969, 1437
TscAI CASTG 2 cut(s) 853, 1776
TseFI GTSAC 3 cut(s) 545, 1516, 1722
TseI GCWGC 1 cut(s) 1503
Tsp45I GTSAC 3 cut(s) 545, 1516, 1722
TspDTI ATGAA 9 cut(s) 17, 73, 1169, 1292, 1371, 1565, 1667, 1686, 1763
TspRI CASTG 2 cut(s) 853, 1776
VspI ATTAAT 2 cut(s) 1071, 1326
XapI RAATTY 3 cut(s) 25, 416, 1764
XceI RCATGY 1 cut(s) 1723
XcmI CCANNNNNNNNNTGG 1 cut(s) 1235
XmiI GTMKAC 2 cut(s) 1307, 1348
Zsp2I ATGCAT 1 cut(s) 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.