Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010083

Physical Location & Seq

Genomic Coordinates Forward (+)

32871890 .. 32872120

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTGCCTCCTGTTCTTCACAGCCCGTCCGACCTTCTGGGTTCGAGACTCCAAGAAAGCCATGTCCCATTTTCAGTCTCCCCACCGAGGAGCTCGGCCGCGCCCACTTCACGACTTTGAGGTAACGTCAAAACCAGAGGCCTGGTTGATGAAACTCAGCATTCATTGGATTTGGGTTATCTTAGTAGGAACCTTTACCCTTCCATTGCTTTCTAGGTTATTAAGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

77

Amino Acids

8.89

Weight (kDa)

10.91

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06000 AT2G06000
fragaria_vesca	FvH4_5g31880
malus_domestica	MD02G1091700.v1.1 MD15G1217800.v1.1
prunus_persica	Prupe.7G198600_v2.0.a1
pyrus_communis	pycom02g07300 pycom15g19340 pycom15g33430 pycom15g33440
rosa_chinensis	RchiOBHm_Chr7g0227901
rosa_laevigata	RLG00000001605
rosa_multiflora	Rmu_co8402659.1_g000001 Rmu_sc0000347.1_g000003
rosa_roxburghii	Rroxscaffold_3G00231780
rosa_rugosa	Rorug07G0244100
rosa_samantha	Rh7AG397500 Rh7BG379100 Rh7CG415700 Rh7DG393000
rosa_wichuraiana	Rw7G033070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	100
AciI	CCGC	2 cut(s)	98, 225
AcoI	YGGCCR	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	39, 81
AoxI	GGCC	2 cut(s)	95, 138
AspLEI	GCGC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	39, 81
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	102
BseX3I	CGGCCG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	97, 140
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	39, 81
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	97, 140
Bsp1286I	GDGCHC	1 cut(s)	94
BspACI	CCGC	2 cut(s)	98, 225
BspANI	GGCC	2 cut(s)	97, 140
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	155, 181
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	39, 81
BstMCI	CGRYCG	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstUI	CGCG	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstZI	CGGCCG	1 cut(s)	95
BsuRI	GGCC	2 cut(s)	97, 140
CfoI	GCGC	1 cut(s)	102
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	5 cut(s)	23, 59, 92, 97, 140
CviKI_1	RGCY	5 cut(s)	23, 59, 92, 97, 140
DdeI	CTNAG	2 cut(s)	155, 181
EaeI	YGGCCR	1 cut(s)	95
EagI	CGGCCG	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	92
EclXI	CGGCCG	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	97, 140
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	44, 110
HpyAV	CCTTC	2 cut(s)	43, 209
HpyCH4IV	ACGT	1 cut(s)	125
HpyF3I	CTNAG	2 cut(s)	155, 181
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	5 cut(s)	22, 23, 127, 147, 154
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	4 cut(s)	17, 80, 112, 130
MseI	TTAA	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	100
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	140
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	6 cut(s)	35, 94, 123, 128, 194, 218
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	98, 225
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	94
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	43
TauI	GCSGC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	152, 164
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.