pycom15g19340

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010083
Physical Location & Seq
Forward (+)
13753585 .. 13756091
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g19340.1

Sequence Viewer

Length: 1839 bp
ATGACTCCTGGTCCTCGGGGATGGAGACGTCAGTGGGCAAGGATGGAAGAGACCCACGATCCGAATCCCAAACCCCATACGACTTCCGGGCGACCCGCGAGAAAATCCGGTCGATCAACCCGAACCCAGAACAGGATTTTCATTGAAAACATCTATGAGAGCAGTGCTGAGCCTAGGGATGGGCCGGCGGTGCAGATGACCGTCCTGTTCTTCAAAGCCCGTCCGACCTTCTGGGTTCGAGCCTCCAAGATCGCCGTTTCCCATTTTCACAACCTCGCCCACGGTGGAGCTCGGCCGCGTCCGCTTCACGACTTTGAGGTAACGTCAAACCCAGAGGCTTGGTTTGTGAAAGTTGTTTGCACTCTGTTTCTTCGCTCGCATTCACTGGATTTGGTTTATCTTAGTAAGAACCTTTCACCGTCGACTGCTTTCGAGGTTATTAAAAGGTTGAACAATCCGATATTGGGGTTGAAATTCTTTGAGCTCAGTAGGGTTAGTTTGAGTGTTAATCATAGTGTATGGACTTACAATTTTCTTTTGAGGTCTCTGTGTCAAATGGGGCTTCAAGATTCTGCTAAATTGGTGTTTGATTACATGAGGAGTGACGGGCATACACCCGATGATTCGGCTGTGGAACTCTTGGTGTCGTCGTATGCTCAGATGGGCAAGTTGGATAATGCTGAGAAGTTTCTTGATGAGGTTCATTGTGATGAGATTAGATTGACGCCTTTCGTATACAATAACTTGTTCAATGTGTTGGTTAAACAGAATAAAGCGGATGAGGCTGTTTACTTGTTTAGAAAGCATATGCGGTCACATTGTCGCCCGGATAGCTGGACTTTCAATATTCTAATTCGAGGTCTATGCAGAGTTGGGGAAGTTGATAAGGCGTTTGAGTTGTTCAGTGATATGGGGAGTTTTGGTTGCTACCCCGATATAGTTACGTATAATACACTAATTACTGGACTTTGTAGGACTAACAAGGTAGATAGGGGATGTCAATTACTCAAAGAGGTTCAATCAAGAATCGAACTTTCACCCGATGTTATAACTTTCACGTCAGTCATATCAGGATATTGCAAGTTGGGTAAGATGGAGGAGGCCTCAGTTCTTTTTGATGAGATGATTAATGCCGGAGTTAGACCAACTTCTGTTACTTTCAATGCAATGATTGATGGATTTGGTAAGACTGGCAACATGGGTTCTGCACTTGCTATGCATCAGAAAATGCTCTTTCATGGTTATCGATCAGATGTTTTTACCTTCACTTCCCTAATTGATGGCCATTGTCAAGCTGGGCAACTGAGTCAGGGATTAAAGCTTTGGCAGGAGATGAATGGGAAAAATGTGTCTCCAAGTGCGTATACTTTCTCTGTCCTTATTAATGCTTTGTGCAAGGAGAGTAGACTACATGAAGCACGTGATTTTCTGAGGCAATTAAAGTGGAGTAATGTGGTTCCAAAACCTTTTATATACAACCCTGTGATAGATGGATTCTGTAAGGCTGGCAATGTTGATGAGGCAAATGCCATTGTGGCCGAGATGGAAGAGAAGAGATGCAGCCCTGATAAAGTGACGTTTACCATTCTCATACTCGGGAATTGTATGAAAGGGAGAATGTCTGAGGCAATTAGCAATTTTAAAAAGATGTTGGCAATTGGTTGTGCCCCGGACAACATCACCGTAAATGCTTTGACATCTTGCCTCATGAAGGCTGGGATGCCTAATGAAGCCCATCACATTAAGCAAATTGCATACAAGGACCTCAATTCGGGCATGTCACCTTCAGGAAGAACTGATCATATGAAAGCAAATGCACAAATTCCAGTGGCTGTTTGA

Protein Analysis

613

Amino Acids

68.8

Weight (kDa)

8.91

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 210 - 337 1.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 244 - 290 1.6e-11 PPR repeat family
PPR_3 PF13812 265 - 320 1.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 273 - 304 3.1e-13 PPR repeat
PPR PF01535 280 - 309 2.7e-08 PPR repeat
PPR_2 PF13041 280 - 325 1.1e-17 PPR repeat family
PPR_1 PF12854 308 - 338 6.9e-11 PPR repeat
PPR_2 PF13041 311 - 340 1.2e-06 PPR repeat family
PPR_3 PF13812 336 - 396 3.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 345 - 375 2.4e-12 PPR repeat
PPR_2 PF13041 347 - 396 4.8e-17 PPR repeat family
PPR PF01535 350 - 380 1.7e-09 PPR repeat
PPR_1 PF12854 379 - 410 6.4e-06 PPR repeat
PPR_2 PF13041 382 - 431 2.3e-12 PPR repeat family
PPR PF01535 385 - 414 9.6e-06 PPR repeat
PPR_3 PF13812 409 - 464 8.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 414 - 445 6.1e-08 PPR repeat
PPR_2 PF13041 418 - 466 2.8e-16 PPR repeat family
PPR PF01535 420 - 449 5.9e-06 PPR repeat
PPR_long PF17177 435 - 532 5.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 448 - 479 2e-07 PPR repeat
PPR_1 PF12854 485 - 516 4.7e-08 PPR repeat
PPR_3 PF13812 489 - 531 9.4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 490 - 535 7.9e-14 PPR repeat family
PPR PF01535 491 - 520 6.1e-06 PPR repeat
PPR_1 PF12854 518 - 550 1.1e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
AatII GACGTC 1 cut(s) 31
AccI GTMKAC 4 cut(s) 422, 735, 1364, 1405
AccII CGCG 2 cut(s) 98, 298
AciI CCGC 6 cut(s) 96, 188, 296, 302, 776, 811
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 3 cut(s) 293, 1282, 1536
AcsI RAATTY 2 cut(s) 473, 1821
AcuI CTGAAG 1 cut(s) 1770
AcvI CACGTG 1 cut(s) 1421
AcyI GRCGYC 2 cut(s) 28, 725
AfiI CCNNNNNNNGG 5 cut(s) 132, 179, 464, 1711, 1771
AgsI TTSAA 9 cut(s) 146, 214, 451, 472, 566, 751, 844, 1019, 1162
AhdI GACNNNNNGTC 1 cut(s) 9
AjiI CACGTC 1 cut(s) 1059
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 5 cut(s) 290, 484, 834, 1295, 1321
AluI AGCT 5 cut(s) 290, 484, 834, 1295, 1321
Alw21I GWGCWC 2 cut(s) 292, 486
Alw26I GTCTC 4 cut(s) 19, 44, 549, 1356
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 1832
Ama87I CYCGRG 2 cut(s) 15, 1595
AoxI GGCC 5 cut(s) 182, 293, 1101, 1282, 1536
ApeKI GCWGC 1 cut(s) 1560
ApoI RAATTY 2 cut(s) 473, 1821
AseI ATTAAT 2 cut(s) 1128, 1383
AspA2I CCTAGG 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 11, 182, 1762
AsuC2I CCSGG 3 cut(s) 88, 827, 1670
AsuHPI GGTGA 4 cut(s) 408, 1029, 1672, 1773
AvaI CYCGRG 2 cut(s) 15, 1595
AvaII GGWCC 2 cut(s) 11, 1762
AvrII CCTAGG 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 1669
BalI TGGCCA 1 cut(s) 1284
BanII GRGCYC 2 cut(s) 292, 486
BbrPI CACGTG 1 cut(s) 1421
Bbv12I GWGCWC 2 cut(s) 292, 486
BbvI GCAGC 1 cut(s) 1572
BceAI ACGGC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 846, 880
BciT130I CCWGG 1 cut(s) 9
BclI TGATCA 1 cut(s) 1798
BcnI CCSGG 3 cut(s) 88, 827, 1670
BcoDI GTCTC 4 cut(s) 19, 44, 549, 1356
BfaI CTAG 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 1535
BisI GCNGC 2 cut(s) 296, 1561
BlnI CCTAGG 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 297, 1562
Bme1390I CCNGG 4 cut(s) 9, 88, 827, 1670
Bme18I GGWCC 2 cut(s) 11, 1762
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 2 cut(s) 15, 1595
BmgBI CACGTC 1 cut(s) 1059
BmgT120I GGNCC 3 cut(s) 11, 182, 1762
BmiI GGNNCC 1 cut(s) 1458
BmrFI CCNGG 4 cut(s) 9, 88, 827, 1670
BmsI GCATC 3 cut(s) 1228, 1547, 1710
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 3 cut(s) 88, 827, 1670
Bsa29I ATCGAT 1 cut(s) 1246
BsaAI YACGTR 2 cut(s) 945, 1421
BsaBI GATNNNNATC 1 cut(s) 63
BsaHI GRCGYC 2 cut(s) 28, 725
BsaI GGTCTC 2 cut(s) 44, 549
BsaJI CCNNGG 4 cut(s) 14, 173, 280, 1668
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bsc4I CCNNNNNNNGG 5 cut(s) 132, 179, 464, 1711, 1771
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 4 cut(s) 390, 967, 1195, 1826
Bse3DI GCAATG 2 cut(s) 1173, 1516
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 9
BseCI ATCGAT 1 cut(s) 1246
BseDI CCNNGG 4 cut(s) 14, 173, 280, 1668
BseGI GGATG 6 cut(s) 26, 48, 184, 784, 1001, 1725
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 5 cut(s) 132, 179, 464, 1711, 1771
BseMI GCAATG 2 cut(s) 1173, 1516
BseMII CTCAG 8 cut(s) 159, 499, 671, 672, 1119, 1295, 1421, 1614
BseNI ACTGG 4 cut(s) 390, 967, 1195, 1826
BseRI GAGGAG 2 cut(s) 613, 1112
BseSI GKGCMC 1 cut(s) 1669
BseX3I CGGCCG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 1572
BseYI CCCAGC 2 cut(s) 1295, 1715
BsgI GTGCAG 2 cut(s) 212, 1191
Bsh1236I CGCG 2 cut(s) 98, 298
Bsh1285I CGRYCG 2 cut(s) 112, 296
BshFI GGCC 5 cut(s) 184, 295, 1103, 1284, 1538
BshVI ATCGAT 1 cut(s) 1246
BsiEI CGRYCG 2 cut(s) 112, 296
BsiHKAI GWGCWC 2 cut(s) 292, 486
BsiHKCI CYCGRG 2 cut(s) 15, 1595
BsiSI CCGG 6 cut(s) 87, 108, 185, 827, 1134, 1670
BslI CCNNNNNNNGG 5 cut(s) 132, 179, 464, 1711, 1771
BsmAI GTCTC 4 cut(s) 19, 44, 549, 1356
BsmBI CGTCTC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 5 cut(s) 184, 295, 1103, 1284, 1538
Bso31I GGTCTC 2 cut(s) 44, 549
BsoBI CYCGRG 2 cut(s) 15, 1595
Bsp1286I GDGCHC 3 cut(s) 292, 486, 1669
Bsp143I GATC 5 cut(s) 58, 113, 249, 1247, 1798
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 6 cut(s) 96, 188, 296, 302, 776, 811
BspANI GGCC 5 cut(s) 184, 295, 1103, 1284, 1538
BspCNI CTCAG 8 cut(s) 160, 498, 670, 673, 1118, 1296, 1422, 1615
BspDI ATCGAT 1 cut(s) 1246
BspFNI CGCG 2 cut(s) 98, 298
BspHI TCATGA 1 cut(s) 1707
BspLI GGNNCC 1 cut(s) 1458
BspPI GGATC 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 44, 549
BsrDI GCAATG 2 cut(s) 1173, 1516
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 4 cut(s) 390, 967, 1195, 1826
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 4 cut(s) 14, 173, 280, 1668
BssMI GATC 5 cut(s) 58, 113, 249, 1247, 1798
BssNAI GTATAC 2 cut(s) 736, 1365
BssNI GRCGYC 2 cut(s) 28, 725
BssT1I CCWWGG 1 cut(s) 173
Bst1107I GTATAC 2 cut(s) 736, 1365
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 4 cut(s) 202, 284, 420, 1684
Bst6I CTCTTC 3 cut(s) 42, 1542, 1547
BstACI GRCGYC 2 cut(s) 28, 725
BstBAI YACGTR 2 cut(s) 945, 1421
BstC8I GCNNGC 3 cut(s) 186, 377, 1507
BstDEI CTNAG 9 cut(s) 168, 401, 485, 657, 681, 1105, 1304, 1430, 1623
BstDSI CCRYGG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 1709
BstF5I GGATG 6 cut(s) 26, 48, 184, 784, 1001, 1725
BstFNI CGCG 2 cut(s) 98, 298
BstKTI GATC 5 cut(s) 61, 116, 252, 1250, 1801
BstMAI GTCTC 4 cut(s) 19, 44, 549, 1356
BstMBI GATC 5 cut(s) 58, 113, 249, 1247, 1798
BstMCI CGRYCG 2 cut(s) 112, 296
BstMWI GCNNNNNNNGC 5 cut(s) 190, 301, 782, 831, 1535
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 1780
BstSCI CCNGG 4 cut(s) 7, 86, 825, 1668
BstSLI GKGCMC 1 cut(s) 1669
BstSNI TACGTA 1 cut(s) 945
BstUI CGCG 2 cut(s) 98, 298
BstV1I GCAGC 1 cut(s) 1572
BstXI CCANNNNNNTGG 1 cut(s) 339
BstZ17I GTATAC 2 cut(s) 736, 1365
BstZI CGGCCG 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 1246
BsuRI GGCC 5 cut(s) 184, 295, 1103, 1284, 1538
BsuTUI ATCGAT 1 cut(s) 1246
BtgI CCRYGG 1 cut(s) 280
BtrI CACGTC 1 cut(s) 1059
BtsCI GGATG 6 cut(s) 26, 48, 184, 784, 1001, 1725
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 5 cut(s) 38, 169, 383, 910, 1833
Cac8I GCNNGC 3 cut(s) 186, 377, 1507
CaiI CAGNNNCTG 1 cut(s) 1832
CciI TCATGA 1 cut(s) 1707
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 3 cut(s) 11, 182, 1762
ClaI ATCGAT 1 cut(s) 1246
CseI GACGC 2 cut(s) 287, 733
CspCI CAANNNNNGTGG 2 cut(s) 1424, 1459
CviAII CATG 6 cut(s) 595, 1198, 1238, 1412, 1708, 1777
DdeI CTNAG 9 cut(s) 168, 401, 485, 657, 681, 1105, 1304, 1430, 1623
DpnI GATC 5 cut(s) 60, 115, 251, 1249, 1800
DpnII GATC 5 cut(s) 58, 113, 249, 1247, 1798
DraI TTTAAA 1 cut(s) 1642
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 3 cut(s) 293, 1282, 1536
EagI CGGCCG 1 cut(s) 293
Eam1104I CTCTTC 3 cut(s) 42, 1542, 1547
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 3 cut(s) 42, 1542, 1547
Ecl136II GAGCTC 2 cut(s) 290, 484
EclXI CGGCCG 1 cut(s) 293
Eco105I TACGTA 1 cut(s) 945
Eco130I CCWWGG 1 cut(s) 173
Eco147I AGGCCT 1 cut(s) 1103
Eco24I GRGCYC 2 cut(s) 292, 486
Eco31I GGTCTC 2 cut(s) 44, 549
Eco47I GGWCC 2 cut(s) 11, 1762
Eco52I CGGCCG 1 cut(s) 293
Eco53kI GAGCTC 2 cut(s) 290, 484
Eco57I CTGAAG 1 cut(s) 1770
Eco72I CACGTG 1 cut(s) 1421
Eco88I CYCGRG 2 cut(s) 15, 1595
EcoICRI GAGCTC 2 cut(s) 290, 484
EcoNI CCTNNNNNAGG 1 cut(s) 1709
EcoO109I RGGNCCY 1 cut(s) 1762
EcoRII CCWGG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 1221
EcoT38I GRGCYC 2 cut(s) 292, 486
ErhI CCWWGG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 6 cut(s) 598, 1201, 1241, 1415, 1711, 1780
FatI CATG 6 cut(s) 594, 1197, 1237, 1411, 1707, 1776
FauI CCCGC 1 cut(s) 103
FauNDI CATATG 2 cut(s) 807, 1803
FbaI TGATCA 1 cut(s) 1798
FblI GTMKAC 4 cut(s) 422, 735, 1364, 1405
Fnu4HI GCNGC 2 cut(s) 296, 1561
FokI GGATG 6 cut(s) 33, 55, 191, 791, 1008, 1732
FriOI GRGCYC 2 cut(s) 292, 486
Fsp4HI GCNGC 2 cut(s) 296, 1561
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 296, 1561
GsaI CCCAGC 2 cut(s) 1299, 1719
HaeIII GGCC 5 cut(s) 184, 295, 1103, 1284, 1538
HapII CCGG 6 cut(s) 87, 108, 185, 827, 1134, 1670
HgaI GACGC 2 cut(s) 287, 733
Hin1I GRCGYC 2 cut(s) 28, 725
Hin1II CATG 6 cut(s) 598, 1201, 1241, 1415, 1711, 1780
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 1319
HinfI GANTC 7 cut(s) 4, 64, 569, 623, 1026, 1306, 1494
HpaII CCGG 6 cut(s) 87, 108, 185, 827, 1134, 1670
HphI GGTGA 4 cut(s) 408, 1029, 1672, 1773
Hpy166II GTNNAC 6 cut(s) 423, 736, 790, 1365, 1406, 1581
Hpy188I TCNGA 8 cut(s) 63, 225, 459, 660, 1224, 1252, 1431, 1624
Hpy188III TCNNGA 8 cut(s) 308, 566, 692, 1023, 1071, 1597, 1708, 1788
Hpy8I GTNNAC 6 cut(s) 423, 736, 790, 1365, 1406, 1581
Hpy99I CGWCG 2 cut(s) 424, 652
HpyAV CCTTC 4 cut(s) 238, 1273, 1705, 1794
HpyCH4III ACNGT 4 cut(s) 202, 284, 420, 1684
HpyCH4IV ACGT 6 cut(s) 28, 323, 944, 1058, 1420, 1577
HpyF10VI GCNNNNNNNGC 5 cut(s) 190, 301, 782, 831, 1535
HpyF3I CTNAG 9 cut(s) 168, 401, 485, 657, 681, 1105, 1304, 1430, 1623
HpySE526I ACGT 6 cut(s) 28, 323, 944, 1058, 1420, 1577
Hsp92I GRCGYC 2 cut(s) 28, 725
Hsp92II CATG 6 cut(s) 598, 1201, 1241, 1415, 1711, 1780
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 1798
Kzo9I GATC 5 cut(s) 58, 113, 249, 1247, 1798
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 1 cut(s) 1572
LweI GCATC 3 cut(s) 1228, 1547, 1710
MaeI CTAG 1 cut(s) 174
MaeII ACGT 6 cut(s) 28, 323, 944, 1058, 1420, 1577
MaeIII GTNAC 7 cut(s) 319, 602, 813, 940, 1153, 1573, 1779
MalI GATC 5 cut(s) 60, 115, 251, 1249, 1800
MboI GATC 5 cut(s) 58, 113, 249, 1247, 1798
MboII GAAGA 6 cut(s) 59, 202, 362, 1559, 1564, 1803
MfeI CAATTG 1 cut(s) 1656
MhlI GDGCHC 3 cut(s) 292, 486, 1669
MlsI TGGCCA 1 cut(s) 1284
MluNI TGGCCA 1 cut(s) 1284
MlyI GAGTC 1 cut(s) 1315
MmeI TCCRAC 2 cut(s) 248, 651
Mox20I TGGCCA 1 cut(s) 1284
Mph1103I ATGCAT 1 cut(s) 1221
MroNI GCCGGC 1 cut(s) 184
MscI TGGCCA 1 cut(s) 1284
MseI TTAA 9 cut(s) 441, 507, 762, 1128, 1316, 1383, 1439, 1641, 1743
MslI CAYNNNNRTG 1 cut(s) 708
Msp20I TGGCCA 1 cut(s) 1284
MspI CCGG 6 cut(s) 87, 108, 185, 827, 1134, 1670
MspR9I CCNGG 4 cut(s) 9, 88, 827, 1670
MunI CAATTG 1 cut(s) 1656
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 1 cut(s) 9
MvnI CGCG 2 cut(s) 98, 298
MwoI GCNNNNNNNGC 5 cut(s) 190, 301, 782, 831, 1535
NaeI GCCGGC 1 cut(s) 186
NciI CCSGG 3 cut(s) 88, 827, 1670
NdeI CATATG 2 cut(s) 807, 1803
NdeII GATC 5 cut(s) 58, 113, 249, 1247, 1798
NgoMIV GCCGGC 1 cut(s) 184
NlaIII CATG 6 cut(s) 598, 1201, 1241, 1415, 1711, 1780
NlaIV GGNNCC 1 cut(s) 1458
NmeAIII GCCGAG 2 cut(s) 271, 1564
NmuCI GTSAC 4 cut(s) 602, 813, 1573, 1779
NsiI ATGCAT 1 cut(s) 1221
NspI RCATGY 1 cut(s) 1780
PagI TCATGA 1 cut(s) 1707
PceI AGGCCT 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PctI GAATGC 1 cut(s) 379
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 5 cut(s) 64, 569, 623, 1026, 1494
PkrI GCNGC 2 cut(s) 297, 1562
PleI GAGTC 1 cut(s) 1314
PmaCI CACGTG 1 cut(s) 1421
PmlI CACGTG 1 cut(s) 1421
PpsI GAGTC 1 cut(s) 1314
Ppu21I YACGTR 2 cut(s) 945, 1421
PpuMI RGGWCCY 1 cut(s) 1762
PshBI ATTAAT 2 cut(s) 1128, 1383
PsiI TTATAA 1 cut(s) 1049
Psp124BI GAGCTC 2 cut(s) 292, 486
Psp5II RGGWCCY 1 cut(s) 1762
Psp6I CCWGG 1 cut(s) 7
PspCI CACGTG 1 cut(s) 1421
PspFI CCCAGC 2 cut(s) 1295, 1715
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 1458
PspPI GGNCC 3 cut(s) 11, 182, 1762
PspPPI RGGWCCY 1 cut(s) 1762
PstNI CAGNNNCTG 1 cut(s) 1832
RseI CAYNNNNRTG 1 cut(s) 708
SacI GAGCTC 2 cut(s) 292, 486
SalI GTCGAC 1 cut(s) 421
SaqAI TTAA 9 cut(s) 441, 507, 762, 1128, 1316, 1383, 1439, 1641, 1743
SatI GCNGC 2 cut(s) 296, 1561
Sau3AI GATC 5 cut(s) 58, 113, 249, 1247, 1798
Sau96I GGNCC 3 cut(s) 11, 182, 1762
SchI GAGTC 1 cut(s) 1315
ScrFI CCNGG 4 cut(s) 9, 88, 827, 1670
SduI GDGCHC 3 cut(s) 292, 486, 1669
SfaNI GCATC 3 cut(s) 1228, 1547, 1710
SinI GGWCC 2 cut(s) 11, 1762
SmiMI CAYNNNNRTG 1 cut(s) 708
SnaBI TACGTA 1 cut(s) 945
SseBI AGGCCT 1 cut(s) 1103
SsiI CCGC 6 cut(s) 96, 188, 296, 302, 776, 811
SspI AATATT 1 cut(s) 847
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 2 cut(s) 292, 486
StuI AGGCCT 1 cut(s) 1103
StyD4I CCNGG 4 cut(s) 7, 86, 825, 1668
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 4 cut(s) 202, 284, 420, 1684
TaiI ACGT 6 cut(s) 31, 326, 947, 1061, 1423, 1580
TaqI TCGA 7 cut(s) 112, 238, 422, 432, 856, 1029, 1246
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 5 cut(s) 64, 569, 623, 1026, 1494
Tru1I TTAA 9 cut(s) 441, 507, 762, 1128, 1316, 1383, 1439, 1641, 1743
Tru9I TTAA 9 cut(s) 441, 507, 762, 1128, 1316, 1383, 1439, 1641, 1743
TscAI CASTG 5 cut(s) 38, 169, 390, 910, 1833
TseFI GTSAC 4 cut(s) 602, 813, 1573, 1779
TseI GCWGC 1 cut(s) 1560
Tsp45I GTSAC 4 cut(s) 602, 813, 1573, 1779
TspDTI ATGAA 9 cut(s) 130, 692, 1226, 1349, 1428, 1622, 1724, 1743, 1820
TspRI CASTG 5 cut(s) 38, 169, 390, 910, 1833
VpaK11BI GGWCC 2 cut(s) 11, 1762
VspI ATTAAT 2 cut(s) 1128, 1383
XagI CCTNNNNNAGG 1 cut(s) 1709
XapI RAATTY 2 cut(s) 473, 1821
XceI RCATGY 1 cut(s) 1780
XcmI CCANNNNNNNNNTGG 1 cut(s) 1292
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 4 cut(s) 422, 735, 1364, 1405
XspI CTAG 1 cut(s) 174
ZraI GACGTC 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.