RchiOBHm_Chr7g0227901

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0010083
Physical Location & Seq
Forward (+)
51157628 .. 51160806
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20413

Sequence Viewer

Length: 1746 bp
ATGAAGATTCACGACCCGAACCCAAAACCCGGTCAAACCCAAACCCGAATTCTGATCGAGAATGTCTATGAGAGCCGCGCTGTGCCCGACGACGGCGTGGCCGTGCAGATGAGCCTCTTGTTCTTCACAGCCCGCCCCGCTTTCTGGGCTCGAGCCTCCAAAATCGCCGCCTCCCATTTCCACACACTCGCCGGAGCTCGCCCTCGACCCGAAAGAGAGGTACTGCTAAACCCTGAGGCCTGGTTTGTGAAGGTTGTTTACACTCTCTTTCTTCGCTCGCATTCTTTGGATTCTTACTTGGGTTATTTGAGCAAGAACTTAACGCCTTCGTTGGCCTTTGAGGTTATTAGAAGGTTGAACAACCCCAATTTGGGGCTCAAGTTCTTTGAGCTCAGTAAGTTCAGTCTGAGTGTTAATCATGGTGTGTGGACTTACAATTTTCTTTTGAGGTCTTTGTGCCAAATGGGTCTTCAAGATTCGGCTAAATTGGTGTTTGATTACATGAGGATTGATGGGCTTTCGCCCGATGAATCAGTTGTTGAGTTTTTGGTTTCATCATGTGCTCAAATGAGTAGGTTGGATCTTGCAGAGAAGATTCTTGATGAGGTTCATTGCAGTGAGATTAGGCTGTCGAGCTTTGTGTACAATAACTTGTTCAATGTGCTGGTTAAACAGAATCAAGTAGATGAGGCTGTTTGCTTGTTCAGAAAGTATGTGGGGTCGCATTGTTGTCCGGATAGTTGGATGTTTAATATTTTGATTCGAGGTTTATGCAGAACTGGAGCAATTGATAAGGCTTTTGAGTTTTTCAGTGATATGGGGAGTTTTGGTTGTTCCCCTGATGTTGTTACGTATAACACACTAATTAGTGGACTATGTAGAGCTAATGAGGTAGATAGAGGGTGTGATTTACTCAGGGAGGTTCAGTCAAGAAGTGAGCTTTTGCCTGATGTTATAACTTTTACGTCGGTTATATCAGGCTATTGCAAATTGGGTAGAATGGAGGAGGCCTCTGCCATTTTTGATGAGATGATTAATTGTGGAGTTAGACCAACTGCAGTTACTTTTAATGCACTGATTGATGGATTTGGTAAAGCAGGTGACATGAGTTCTGCATTTGCTATGTATGAGAATATGCTCTTCCATGGTCATCGCGCAGATGTGATTACCTTCACTTCCCTAATTGATGGCTATTGTCGAGCTGGGCACCTGAACCATGGGTTACAGCTCTGGCATGAGATGAATGCAAAAAATGTGTCTCCTACTGCATATACTTTCTCTGTGCTTATTAATGCTTTGTGCAAGGAGAATAGACTGCGTGAGGCACGTGATTTACTGAGGGAACTGAAGTGGAGTAATGTTGTTCCAAAACCTTTTATATATAACCCTGTGGTAGACGGATTTTGCAAGGCTGGTAATGTTGATGAGGCGAATTTGATTGTGGCAGAGATGGAGGAGAAGAGATGTACCCCTGATAAAGTGACATTCACCATTCTTATCCTAGGGAATTCTATGAAAGGGAGAATGACCGAGGCAATTGGCAATTTTAATAAGATGTTGTCCATCGGTTGTGCCCCAGATAAAATCACCGTAGATTCTTTGATATCTTGCCTCTCCAAGGCTGGGATGCCCAGTGAAGCCCGCCGCATCAAGAAAATCGCATATGAGGACCTGAATTTGGGAGCGTTATCTATGGGAAGACCTCATCATTTGAGAGCAAATGCAGAAATTCCAGTGGCTATTTGA

Protein Analysis

581

Amino Acids

65.04

Weight (kDa)

6.91

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 178 - 303 9.4e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 212 - 259 2.2e-09 PPR repeat family
PPR_1 PF12854 242 - 273 2.3e-10 PPR repeat
PPR_2 PF13041 245 - 294 4.8e-18 PPR repeat family
PPR PF01535 249 - 278 1.7e-06 PPR repeat
PPR_long PF17177 261 - 375 2.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 277 - 307 9.8e-14 PPR repeat
PPR_3 PF13812 304 - 365 5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 314 - 344 6.1e-12 PPR repeat
PPR_2 PF13041 316 - 365 2.7e-16 PPR repeat family
PPR PF01535 319 - 349 7.8e-10 PPR repeat
PPR_1 PF12854 348 - 379 2e-08 PPR repeat
PPR_2 PF13041 351 - 400 1.8e-14 PPR repeat family
PPR PF01535 354 - 383 4.7e-06 PPR repeat
PPR_long PF17177 365 - 507 2.6e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 378 - 433 1.7e-07 Pentatricopeptide repeat domain
TPR_24 PF23276 383 - 452 2.6e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 383 - 414 6e-10 PPR repeat
PPR_2 PF13041 387 - 435 2.1e-17 PPR repeat family
PPR PF01535 389 - 418 1.8e-06 PPR repeat
PPR_1 PF12854 417 - 449 6.6e-09 PPR repeat
PPR_1 PF12854 454 - 485 1e-06 PPR repeat
PPR_2 PF13041 459 - 501 2.4e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AarI CACCTGC 1 cut(s) 1088
Acc36I ACCTGC 1 cut(s) 1088
AccB1I GGYRCC 1 cut(s) 1206
AccI GTMKAC 1 cut(s) 1395
AccII CGCG 2 cut(s) 78, 1155
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 6 cut(s) 76, 133, 138, 168, 1642, 1645
AclWI GGATC 1 cut(s) 588
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 5 cut(s) 48, 1432, 1507, 1675, 1728
AcuI CTGAAG 1 cut(s) 1367
AcvI CACGTG 1 cut(s) 1328
AfaI GTAC 3 cut(s) 222, 644, 1468
AfiI CCNNNNNNNGG 9 cut(s) 29, 92, 144, 370, 371, 372, 1618, 1623, 1678
AgsI TTSAA 3 cut(s) 358, 473, 658
AjnI CCWGG 1 cut(s) 239
AjuI GAANNNNNNNTTGG 4 cut(s) 33, 65, 453, 485
AluBI AGCT 7 cut(s) 197, 391, 636, 884, 940, 1202, 1228
AluI AGCT 7 cut(s) 197, 391, 636, 884, 940, 1202, 1228
Alw21I GWGCWC 3 cut(s) 199, 393, 565
Alw26I GTCTC 1 cut(s) 1263
AlwI GGATC 1 cut(s) 588
Ama87I CYCGRG 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 4 cut(s) 99, 237, 333, 1008
ApoI RAATTY 5 cut(s) 48, 1432, 1507, 1675, 1728
ArsI GACNNNNNNTTYG 2 cut(s) 1241, 1273
AseI ATTAAT 2 cut(s) 1035, 1290
AspA2I CCTAGG 1 cut(s) 1501
AspLEI GCGC 2 cut(s) 80, 1157
AspS9I GGNCC 1 cut(s) 1669
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 3 cut(s) 1112, 1480, 1579
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 1 cut(s) 1669
AvrII CCTAGG 1 cut(s) 1501
AxyI CCTNAGG 1 cut(s) 234
BaeGI GKGCMC 3 cut(s) 87, 1209, 1576
BanI GGYRCC 1 cut(s) 1206
BanII GRGCYC 4 cut(s) 151, 199, 378, 393
BarI GAAGNNNNNNTAC 2 cut(s) 242, 274
BbrPI CACGTG 1 cut(s) 1328
BbsI GAAGAC 2 cut(s) 461, 1705
Bbv12I GWGCWC 3 cut(s) 199, 393, 565
BccI CCATC 5 cut(s) 506, 1076, 1181, 1444, 1571
BceAI ACGGC 2 cut(s) 86, 109
BcgI CGANNNNNNTGC 2 cut(s) 753, 787
BciT130I CCWGG 1 cut(s) 241
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 1 cut(s) 1263
BfaI CTAG 1 cut(s) 1502
BfmI CTRYAG 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 1088
BisI GCNGC 3 cut(s) 76, 168, 1645
BlnI CCTAGG 1 cut(s) 1501
BlsI GCNGC 3 cut(s) 77, 169, 1646
Bme1390I CCNGG 2 cut(s) 30, 241
Bme18I GGWCC 1 cut(s) 1669
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 1669
BmiI GGNNCC 1 cut(s) 1208
BmrFI CCNGG 2 cut(s) 30, 241
BmrI ACTGGG 1 cut(s) 1626
BmsI GCATC 2 cut(s) 1617, 1656
BmuI ACTGGG 1 cut(s) 1626
BpiI GAAGAC 2 cut(s) 461, 1705
BplI GAGNNNNNCTC 2 cut(s) 995, 1027
BpmI CTGGAG 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 30
BsaAI YACGTR 2 cut(s) 852, 1328
BsaJI CCNNGG 5 cut(s) 1144, 1216, 1501, 1530, 1617
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 4 cut(s) 814, 844, 911, 941
Bsc4I CCNNNNNNNGG 9 cut(s) 29, 92, 144, 370, 371, 372, 1618, 1623, 1678
Bse1I ACTGG 3 cut(s) 784, 1632, 1733
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 610
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 5 cut(s) 1144, 1216, 1501, 1530, 1617
BseGI GGATG 2 cut(s) 750, 1632
BseLI CCNNNNNNNGG 9 cut(s) 29, 92, 144, 370, 371, 372, 1618, 1623, 1678
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 5 cut(s) 225, 398, 406, 928, 1328
BseNI ACTGG 3 cut(s) 784, 1632, 1733
BseRI GAGGAG 2 cut(s) 1019, 1469
BseSI GKGCMC 3 cut(s) 87, 1209, 1576
BseYI CCCAGC 2 cut(s) 1202, 1622
BsgI GTGCAG 1 cut(s) 125
Bsh1236I CGCG 2 cut(s) 78, 1155
BshFI GGCC 4 cut(s) 101, 239, 335, 1010
BshNI GGYRCC 1 cut(s) 1206
BsiHKAI GWGCWC 3 cut(s) 199, 393, 565
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 3 cut(s) 30, 192, 734
BslI CCNNNNNNNGG 9 cut(s) 29, 92, 144, 370, 371, 372, 1618, 1623, 1678
BsmAI GTCTC 1 cut(s) 1263
BsmI GAATGC 2 cut(s) 280, 1249
BsnI GGCC 4 cut(s) 101, 239, 335, 1010
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 8 cut(s) 87, 151, 199, 378, 393, 565, 1209, 1576
Bsp13I TCCGGA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 2 cut(s) 54, 580
Bsp19I CCATGG 2 cut(s) 1144, 1216
BspACI CCGC 6 cut(s) 76, 133, 138, 168, 1642, 1645
BspANI GGCC 4 cut(s) 101, 239, 335, 1010
BspCNI CTCAG 5 cut(s) 226, 399, 405, 927, 1329
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 2 cut(s) 78, 1155
BspLI GGNNCC 1 cut(s) 1208
BspMAI CTGCAG 1 cut(s) 1060
BspMI ACCTGC 1 cut(s) 1088
BspPI GGATC 1 cut(s) 588
BspQI GCTCTTC 1 cut(s) 1145
BspT107I GGYRCC 1 cut(s) 1206
BsrDI GCAATG 1 cut(s) 610
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 3 cut(s) 784, 1632, 1733
BssECI CCNNGG 5 cut(s) 1144, 1216, 1501, 1530, 1617
BssMI GATC 2 cut(s) 54, 580
BssT1I CCWWGG 4 cut(s) 1144, 1216, 1501, 1617
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 1591
Bst6I CTCTTC 2 cut(s) 1145, 1454
BstAUI TGTACA 1 cut(s) 642
BstBAI YACGTR 2 cut(s) 852, 1328
BstC8I GCNNGC 4 cut(s) 133, 199, 278, 1642
BstDEI CTNAG 5 cut(s) 234, 392, 407, 914, 1337
BstDSI CCRYGG 2 cut(s) 1144, 1216
BstENI CCTNNNNNAGG 1 cut(s) 1616
BstF5I GGATG 2 cut(s) 750, 1632
BstFNI CGCG 2 cut(s) 78, 1155
BstHHI GCGC 2 cut(s) 80, 1157
BstKTI GATC 2 cut(s) 57, 583
BstMAI GTCTC 1 cut(s) 1263
BstMBI GATC 2 cut(s) 54, 580
BstMWI GCNNNNNNNGC 2 cut(s) 137, 146
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 28, 239
BstSFI CTRYAG 1 cut(s) 1056
BstSLI GKGCMC 3 cut(s) 87, 1209, 1576
BstSNI TACGTA 1 cut(s) 852
BstUI CGCG 2 cut(s) 78, 1155
BstV2I GAAGAC 2 cut(s) 461, 1705
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 4 cut(s) 101, 239, 335, 1010
BtgI CCRYGG 2 cut(s) 1144, 1216
BtgZI GCGATG 1 cut(s) 1136
BtsCI GGATG 2 cut(s) 750, 1632
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 5 cut(s) 622, 817, 1073, 1639, 1740
BveI ACCTGC 1 cut(s) 1088
Cac8I GCNNGC 4 cut(s) 133, 199, 278, 1642
CfoI GCGC 2 cut(s) 80, 1157
Cfr13I GGNCC 1 cut(s) 1669
Csp6I GTAC 3 cut(s) 221, 643, 1467
CviAII CATG 7 cut(s) 419, 502, 558, 1105, 1145, 1217, 1235
CviQI GTAC 3 cut(s) 221, 643, 1467
DdeI CTNAG 5 cut(s) 234, 392, 407, 914, 1337
DpnI GATC 2 cut(s) 56, 582
DpnII GATC 2 cut(s) 54, 580
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 2 cut(s) 1145, 1454
EarI CTCTTC 2 cut(s) 1145, 1454
Ecl136II GAGCTC 2 cut(s) 197, 391
Eco105I TACGTA 1 cut(s) 852
Eco130I CCWWGG 4 cut(s) 1144, 1216, 1501, 1617
Eco147I AGGCCT 2 cut(s) 239, 1010
Eco24I GRGCYC 4 cut(s) 151, 199, 378, 393
Eco32I GATATC 1 cut(s) 1605
Eco47I GGWCC 1 cut(s) 1669
Eco53kI GAGCTC 2 cut(s) 197, 391
Eco57I CTGAAG 1 cut(s) 1367
Eco72I CACGTG 1 cut(s) 1328
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 150
EcoICRI GAGCTC 2 cut(s) 197, 391
EcoNI CCTNNNNNAGG 1 cut(s) 1616
EcoO109I RGGNCCY 1 cut(s) 1669
EcoRI GAATTC 2 cut(s) 48, 1507
EcoRII CCWGG 1 cut(s) 239
EcoRV GATATC 1 cut(s) 1605
EcoT14I CCWWGG 4 cut(s) 1144, 1216, 1501, 1617
EcoT38I GRGCYC 4 cut(s) 151, 199, 378, 393
ErhI CCWWGG 4 cut(s) 1144, 1216, 1501, 1617
FaeI CATG 7 cut(s) 422, 505, 561, 1108, 1148, 1220, 1238
FatI CATG 7 cut(s) 418, 501, 557, 1104, 1144, 1216, 1234
FauI CCCGC 3 cut(s) 140, 145, 1649
FauNDI CATATG 1 cut(s) 1663
FblI GTMKAC 1 cut(s) 1395
Fnu4HI GCNGC 3 cut(s) 76, 168, 1645
FokI GGATG 2 cut(s) 757, 1639
FriOI GRGCYC 4 cut(s) 151, 199, 378, 393
Fsp4HI GCNGC 3 cut(s) 76, 168, 1645
FspBI CTAG 1 cut(s) 1502
GlaI GCGC 2 cut(s) 79, 1156
GluI GCNGC 3 cut(s) 76, 168, 1645
GsaI CCCAGC 2 cut(s) 1206, 1626
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 4 cut(s) 101, 239, 335, 1010
HapII CCGG 3 cut(s) 30, 192, 734
HhaI GCGC 2 cut(s) 80, 1157
Hin1II CATG 7 cut(s) 422, 505, 561, 1108, 1148, 1220, 1238
Hin6I GCGC 2 cut(s) 78, 1155
HinP1I GCGC 2 cut(s) 78, 1155
HinfI GANTC 8 cut(s) 7, 290, 476, 530, 595, 676, 760, 1595
HpaII CCGG 3 cut(s) 30, 192, 734
HphI GGTGA 3 cut(s) 1112, 1480, 1579
Hpy166II GTNNAC 5 cut(s) 259, 429, 643, 872, 1396
Hpy188I TCNGA 3 cut(s) 54, 408, 707
Hpy188III TCNNGA 7 cut(s) 11, 58, 473, 599, 734, 930, 1651
Hpy8I GTNNAC 5 cut(s) 259, 429, 643, 872, 1396
Hpy99I CGWCG 3 cut(s) 92, 95, 970
HpyAV CCTTC 4 cut(s) 244, 336, 345, 1180
HpyCH4III ACNGT 1 cut(s) 1591
HpyCH4IV ACGT 3 cut(s) 851, 965, 1327
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 146
HpyF3I CTNAG 5 cut(s) 234, 392, 407, 914, 1337
HpySE526I ACGT 3 cut(s) 851, 965, 1327
Hsp92II CATG 7 cut(s) 422, 505, 561, 1108, 1148, 1220, 1238
HspAI GCGC 2 cut(s) 78, 1155
Kpn2I TCCGGA 1 cut(s) 733
Kzo9I GATC 2 cut(s) 54, 580
LguI GCTCTTC 1 cut(s) 1145
LmnI GCTCC 3 cut(s) 194, 782, 1682
LweI GCATC 2 cut(s) 1617, 1656
MaeI CTAG 1 cut(s) 1502
MaeII ACGT 3 cut(s) 851, 965, 1327
MaeIII GTNAC 5 cut(s) 847, 1060, 1100, 1221, 1480
MalI GATC 2 cut(s) 56, 582
MboI GATC 2 cut(s) 54, 580
MboII GAAGA 8 cut(s) 16, 115, 263, 461, 604, 1132, 1471, 1710
MfeI CAATTG 2 cut(s) 786, 1536
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 8 cut(s) 87, 151, 199, 378, 393, 565, 1209, 1576
MmeI TCCRAC 2 cut(s) 558, 722
MroI TCCGGA 1 cut(s) 733
MseI TTAA 8 cut(s) 320, 414, 669, 750, 1035, 1068, 1290, 1548
MslI CAYNNNNRTG 1 cut(s) 615
MspI CCGG 3 cut(s) 30, 192, 734
MspR9I CCNGG 2 cut(s) 30, 241
MunI CAATTG 2 cut(s) 786, 1536
Mva1269I GAATGC 2 cut(s) 280, 1249
MvaI CCWGG 1 cut(s) 241
MvnI CGCG 2 cut(s) 78, 1155
MwoI GCNNNNNNNGC 2 cut(s) 137, 146
NciI CCSGG 1 cut(s) 30
NcoI CCATGG 2 cut(s) 1144, 1216
NdeI CATATG 1 cut(s) 1663
NdeII GATC 2 cut(s) 54, 580
NlaIII CATG 7 cut(s) 422, 505, 561, 1108, 1148, 1220, 1238
NlaIV GGNNCC 1 cut(s) 1208
NmuCI GTSAC 2 cut(s) 1100, 1480
PaeR7I CTCGAG 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 1088
PceI AGGCCT 2 cut(s) 239, 1010
PciSI GCTCTTC 1 cut(s) 1145
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 2 cut(s) 280, 1249
PfeI GAWTC 8 cut(s) 7, 290, 476, 530, 595, 676, 760, 1595
PkrI GCNGC 3 cut(s) 77, 169, 1646
PmaCI CACGTG 1 cut(s) 1328
PmlI CACGTG 1 cut(s) 1328
Ppu21I YACGTR 2 cut(s) 852, 1328
PpuMI RGGWCCY 1 cut(s) 1669
PshBI ATTAAT 2 cut(s) 1035, 1290
PsiI TTATAA 1 cut(s) 956
Psp124BI GAGCTC 2 cut(s) 199, 393
Psp5II RGGWCCY 1 cut(s) 1669
Psp6I CCWGG 1 cut(s) 239
PspCI CACGTG 1 cut(s) 1328
PspFI CCCAGC 2 cut(s) 1202, 1622
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 1 cut(s) 1208
PspPI GGNCC 1 cut(s) 1669
PspPPI RGGWCCY 1 cut(s) 1669
PspXI VCTCGAGB 1 cut(s) 150
PstI CTGCAG 1 cut(s) 1060
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 3 cut(s) 222, 644, 1468
RsaNI GTAC 3 cut(s) 221, 643, 1467
RseI CAYNNNNRTG 1 cut(s) 615
SacI GAGCTC 2 cut(s) 199, 393
SapI GCTCTTC 1 cut(s) 1145
SaqAI TTAA 8 cut(s) 320, 414, 669, 750, 1035, 1068, 1290, 1548
SatI GCNGC 3 cut(s) 76, 168, 1645
Sau3AI GATC 2 cut(s) 54, 580
Sau96I GGNCC 1 cut(s) 1669
ScrFI CCNGG 2 cut(s) 30, 241
SduI GDGCHC 8 cut(s) 87, 151, 199, 378, 393, 565, 1209, 1576
SfaNI GCATC 2 cut(s) 1617, 1656
SfcI CTRYAG 1 cut(s) 1056
Sfr274I CTCGAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 1669
SlaI CTCGAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 2 cut(s) 150, 377
SmoI CTYRAG 2 cut(s) 150, 377
SnaBI TACGTA 1 cut(s) 852
SseBI AGGCCT 2 cut(s) 239, 1010
SsiI CCGC 6 cut(s) 76, 133, 138, 168, 1642, 1645
SspI AATATT 1 cut(s) 754
SspMI CTAG 1 cut(s) 1502
SstI GAGCTC 2 cut(s) 199, 393
StuI AGGCCT 2 cut(s) 239, 1010
StyD4I CCNGG 2 cut(s) 28, 239
StyI CCWWGG 4 cut(s) 1144, 1216, 1501, 1617
TaaI ACNGT 1 cut(s) 1591
TaiI ACGT 3 cut(s) 854, 968, 1330
TaqI TCGA 6 cut(s) 57, 151, 205, 632, 763, 1198
TaqII GACCGA 1 cut(s) 1544
TatI WGTACW 1 cut(s) 642
TauI GCSGC 3 cut(s) 78, 170, 1647
TfiI GAWTC 8 cut(s) 7, 290, 476, 530, 595, 676, 760, 1595
Tru1I TTAA 8 cut(s) 320, 414, 669, 750, 1035, 1068, 1290, 1548
Tru9I TTAA 8 cut(s) 320, 414, 669, 750, 1035, 1068, 1290, 1548
TscAI CASTG 5 cut(s) 622, 817, 1080, 1639, 1740
TseFI GTSAC 2 cut(s) 1100, 1480
Tsp45I GTSAC 2 cut(s) 1100, 1480
TspDTI ATGAA 6 cut(s) 17, 543, 543, 599, 1256, 1529
TspGWI ACGGA 1 cut(s) 1413
TspRI CASTG 5 cut(s) 622, 817, 1080, 1639, 1740
VpaK11BI GGWCC 1 cut(s) 1669
VspI ATTAAT 2 cut(s) 1035, 1290
XagI CCTNNNNNAGG 1 cut(s) 1616
XapI RAATTY 5 cut(s) 48, 1432, 1507, 1675, 1728
XhoI CTCGAG 1 cut(s) 150
XmaJI CCTAGG 1 cut(s) 1501
XmiI GTMKAC 1 cut(s) 1395
XspI CTAG 1 cut(s) 1502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.