AT2G06020
MYB Family

DNA-binding transcription factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012464
Physical Location & Seq
Forward (+)
2342535 .. 2346207
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06020.1

Sequence Viewer

Length: 906 bp
ATGAAGAAGCAAGAAAAAGGAAACGAAGTTGTCACTTTCGAAGAAAATCCTAGCACTTATGTTCATCATCACACGAAAAAAGCCTCAATGGTTTTAAGTGAGCAAGAAATAGAGGTTATTCTACAAAGTAATAAGGAGACATATAATGAAAAATTAGAAAAAAATACGAAAGAGAATGCTGAGAAAGTTGGTATTGAAGAAGGAAATGGTTCATCTTCAAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGAGGTGGTCAAGCGACCTTCACGATTGCTTTGTTAATGCTGTGGAAAAACTTGGTGGACCTAACAAAGCGACGCCAAAAAGTGTTAAAGAGGCAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAAGAGTCATCTTCAGAAATTTAGACTTGGAAAGTGTAACATACGGGGTGGAACAAATCAATATGTTAGACAGTCACAATCCATGCCTCACAAGAGTCAACAACAACTTCAGCTCAACAATGATTGTGTCAATCATGACTCATATTGCAATGCAACTTTTTTATCGGTCACGGTACCACCAACAATTGATTCTCTTCATCAGGACACTTTAAACAATACAATTCTTTTTCCAACGACACTACAAGCAATACCGACATCTGTGTCACACAATACGTACATGAGTTCATATCCTTCATACAATACTGTTGAAGTTGTTAAAGCTCAGCTCAATGCATTACAAGATTCAAGCACTAGCCAAACACAAGAAACATTTTCTCGTGAAACCAACTTATCGTCTATAGTCACAAGGGATGAAGCAGATCCAGTGGATAAGTATATTGATTGGAACAAAGTTGGAGAAACTGATATTGAACATGATTCAGTCGAAGTCCTTGAGGCTTTAGGTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

301

Amino Acids

33.82

Weight (kDa)

5.66

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 652
Acc65I GGTACC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 565
AclWI GGATC 1 cut(s) 806
AcsI RAATTY 1 cut(s) 410
AcuI CTGAAG 2 cut(s) 389, 485
AcyI GRCGYC 1 cut(s) 338
AdeI CACNNNGTG 1 cut(s) 391
AfaI GTAC 2 cut(s) 567, 668
AgsI TTSAA 7 cut(s) 197, 219, 371, 701, 738, 863, 901
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AluBI AGCT 3 cut(s) 505, 713, 718
AluI AGCT 3 cut(s) 505, 713, 718
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 806
ApoI RAATTY 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 208
Asp718I GGTACC 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 377
AsuII TTCGAA 1 cut(s) 39
AvaII GGWCC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 565
BauI CACGAG 1 cut(s) 768
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 51, 744
BfmI CTRYAG 1 cut(s) 789
BlpI GCTNAGC 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 1 cut(s) 567
Bpu1102I GCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 905
BsaAI YACGTR 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 815
Bse3DI GCAATG 2 cut(s) 366, 547
BseGI GGATG 1 cut(s) 808
BseMI GCAATG 2 cut(s) 366, 547
BseMII CTCAG 2 cut(s) 171, 728
BseNI ACTGG 1 cut(s) 815
BshNI GGYRCC 1 cut(s) 565
BsmAI GTCTC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 181
Bsp119I TTCGAA 1 cut(s) 39
Bsp143I GATC 2 cut(s) 222, 811
Bsp1720I GCTNAGC 1 cut(s) 714
BspCNI CTCAG 2 cut(s) 172, 727
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 1 cut(s) 806
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 565
BsrDI GCAATG 2 cut(s) 366, 547
BsrI ACTGG 1 cut(s) 815
BssMI GATC 2 cut(s) 222, 811
BssNI GRCGYC 1 cut(s) 338
BssSI CACGAG 1 cut(s) 768
Bst2BI CACGAG 1 cut(s) 768
Bst4CI ACNGT 3 cut(s) 465, 565, 697
Bst6I CTCTTC 2 cut(s) 389, 591
BstACI GRCGYC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 180, 714
BstF5I GGATG 1 cut(s) 808
BstKTI GATC 2 cut(s) 225, 814
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 222, 811
BstSFI CTRYAG 1 cut(s) 789
BstSNI TACGTA 1 cut(s) 666
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BtsCI GGATG 1 cut(s) 808
BtsIMutI CAGTG 1 cut(s) 822
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 346
Csp6I GTAC 2 cut(s) 566, 667
CviAII CATG 6 cut(s) 231, 389, 475, 527, 670, 866
CviJI RGCY 6 cut(s) 83, 505, 713, 718, 747, 890
CviKI_1 RGCY 6 cut(s) 83, 505, 713, 718, 747, 890
CviQI GTAC 2 cut(s) 566, 667
DdeI CTNAG 2 cut(s) 180, 714
DpnI GATC 2 cut(s) 224, 813
DpnII GATC 2 cut(s) 222, 811
DraI TTTAAA 1 cut(s) 603
DraIII CACNNNGTG 1 cut(s) 391
DrdI GACNNNNNNGTC 1 cut(s) 652
DseDI GACNNNNNNGTC 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 389, 591
EarI CTCTTC 2 cut(s) 389, 591
Eco105I TACGTA 1 cut(s) 666
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 2 cut(s) 389, 485
EcoT22I ATGCAT 2 cut(s) 236, 727
FaeI CATG 6 cut(s) 234, 392, 478, 530, 673, 869
FatI CATG 6 cut(s) 230, 388, 474, 526, 669, 865
FokI GGATG 1 cut(s) 815
FspBI CTAG 2 cut(s) 51, 744
HgaI GACGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 6 cut(s) 234, 392, 478, 530, 673, 869
HincII GTYRAC 1 cut(s) 491
HindII GTYRAC 1 cut(s) 491
HinfI GANTC 6 cut(s) 397, 487, 530, 581, 734, 869
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 323, 491
Hpy188I TCNGA 2 cut(s) 250, 408
Hpy188III TCNNGA 4 cut(s) 287, 527, 593, 770
Hpy8I GTNNAC 2 cut(s) 323, 491
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 4 cut(s) 194, 293, 365, 693
HpyCH4III ACNGT 3 cut(s) 465, 565, 697
HpyCH4IV ACGT 1 cut(s) 665
HpyCH4V TGCA 5 cut(s) 234, 380, 540, 545, 725
HpyF3I CTNAG 2 cut(s) 180, 714
HpySE526I ACGT 1 cut(s) 665
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 6 cut(s) 234, 392, 478, 530, 673, 869
KpnI GGTACC 1 cut(s) 569
Kzo9I GATC 2 cut(s) 222, 811
LpnPI CCDG 2 cut(s) 578, 828
MaeI CTAG 2 cut(s) 51, 744
MaeII ACGT 1 cut(s) 665
MaeIII GTNAC 6 cut(s) 31, 428, 465, 559, 654, 793
MalI GATC 2 cut(s) 224, 813
MboI GATC 2 cut(s) 222, 811
MboII GAAGA 7 cut(s) 16, 53, 207, 209, 395, 406, 578
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 811
MluCI AATT 5 cut(s) 152, 375, 410, 576, 612
MlyI GAGTC 3 cut(s) 406, 496, 524
MmeI TCCRAC 2 cut(s) 647, 826
MnlI CCTC 6 cut(s) 94, 106, 261, 349, 489, 880
Mph1103I ATGCAT 2 cut(s) 236, 727
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 5 cut(s) 95, 300, 351, 602, 708
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 181
NdeII GATC 2 cut(s) 222, 811
NlaIII CATG 6 cut(s) 234, 392, 478, 530, 673, 869
NlaIV GGNNCC 1 cut(s) 567
NmuCI GTSAC 5 cut(s) 31, 465, 559, 654, 793
NsiI ATGCAT 2 cut(s) 236, 727
NspV TTCGAA 1 cut(s) 39
PagI TCATGA 1 cut(s) 526
PctI GAATGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 3 cut(s) 581, 734, 869
PleI GAGTC 3 cut(s) 405, 495, 524
PpsI GAGTC 3 cut(s) 405, 495, 524
Ppu21I YACGTR 1 cut(s) 666
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 323
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 2 cut(s) 567, 668
RsaNI GTAC 2 cut(s) 566, 667
SaqAI TTAA 5 cut(s) 95, 300, 351, 602, 708
Sau3AI GATC 2 cut(s) 222, 811
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 3 cut(s) 406, 496, 524
SetI ASST 9 cut(s) 117, 272, 285, 328, 507, 668, 715, 720, 898
SfcI CTRYAG 1 cut(s) 789
SfuI TTCGAA 1 cut(s) 39
SinI GGWCC 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
SnaBI TACGTA 1 cut(s) 666
Sse9I AATT 5 cut(s) 152, 375, 410, 576, 612
SspMI CTAG 2 cut(s) 51, 744
TaaI ACNGT 3 cut(s) 465, 565, 697
TaiI ACGT 1 cut(s) 668
TaqI TCGA 2 cut(s) 39, 876
TaqII GACCGA 1 cut(s) 547
TasI AATT 5 cut(s) 152, 375, 410, 576, 612
TfiI GAWTC 3 cut(s) 581, 734, 869
Tru1I TTAA 5 cut(s) 95, 300, 351, 602, 708
Tru9I TTAA 5 cut(s) 95, 300, 351, 602, 708
TscAI CASTG 1 cut(s) 822
TseFI GTSAC 5 cut(s) 31, 465, 559, 654, 793
Tsp45I GTSAC 5 cut(s) 31, 465, 559, 654, 793
TspDTI ATGAA 9 cut(s) 17, 53, 162, 201, 267, 578, 666, 675, 819
TspRI CASTG 1 cut(s) 822
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 2 cut(s) 51, 744
Zsp2I ATGCAT 2 cut(s) 236, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.