Prupe.3G192100_v2.0.a1
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012464
Physical Location & Seq
Reverse (-)
20435735 .. 20438337
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G192100.1

Sequence Viewer

Length: 1110 bp
ATGTTTCATAGAGGAGGAGGAGGAGGAGGAAGTGGTGTTCCAAATCACACGTATAATAGTCAGCTTCTGCGGGCTGCTGCTCTTCAGCCTCGGGAAGAAGAAGAAGAAAAAGAAAGGATGGTTGGTTGTGGTTTTGATTATTTTGGTGATAATGAGCAAGATTTTCAAGGACCCCCAACTCCCACTGTCACACAGAGTGATGACAGTGTTGTTGTTGAGGGTGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGACCTTTCTCATGATCTTCAAACACCTTCGGTTCTGAGTTCGAACTTCAAACCTCGCCTTAGATGGACTCCTCACCTTCATGCCTGCTTTGTTGATGCTATCAATCAGCTTGGTGGCCCCCATAAGGCAACTCCGAAAAAGCTTCTGCAGAAAATGGGTGTCAAGGGAATAACTCTTTACCACTTGAAGAGCCACCTCCAGAAATACAGACTTGGAAAGTACTCGGTGAAGGAGTGGAAGGAGGTTCCGGAAACTTTTTCACAGGACTTCGAAGGCAGAAGCGTTAGTAGCACTTCCTTGTGCTCATCGCGATCCCAGAAAAAGCATTCTTCTAAACTAATAAAGAAAGCTCTAACCCAGACGGAAGTTGAAGAAAAACTTGGTCTGCAAATTGAGGCTGAGAAGCGATTAAAATTGCGTCAGGATGCCGAACGAAGATATATGGATTATGCACTAGATAATGCATGTAAAAAGCTTGCTGATCAGTTTCTTGGAAGTGTTGCAGTAGACTCTGCAGGCGTATTTCGAAAGGATGTAGCTGGTTTAGGAACTATGGTGTCAATAATATCTCAGAAAGATCAATTCCTTCCATATGACCTAAGTAAGGAAACCAGCATGCAGCTTAGTCTTGAAGACCAACTTGGTGGGTTTGAAGCTCAGAGGGAAGCTTATCACGAAACTGAAGGCCACCTGATCTCACATGGAAATTCAGAAAATTCATCTGTGGAAGATTTCCAAATTCTGGCTGACGATGACAAGATAATGGAGCAGAGTTTGGATAATGACCCTGCAGAAGCTTACTTGGTTTTGGATACTGCTGAAATGGGAACCTCCAGTCATAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

370

Amino Acids

41.37

Weight (kDa)

4.94

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1003
AccI GTMKAC 1 cut(s) 768
AccII CGCG 1 cut(s) 571
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 3 cut(s) 967, 976, 999
AcuI CTGAAG 2 cut(s) 68, 963
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 3 cut(s) 385, 865, 1003
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 7 cut(s) 167, 281, 310, 448, 632, 893, 914
AjuI GAANNNNNNNTTGG 6 cut(s) 105, 137, 624, 656, 885, 917
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
Alw21I GWGCWC 1 cut(s) 566
AlwI GGATC 1 cut(s) 567
AlwNI CAGNNNCTG 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 90
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 2 cut(s) 376, 946
ApeKI GCWGC 3 cut(s) 74, 77, 880
ApoI RAATTY 3 cut(s) 967, 976, 999
AspS9I GGNCC 3 cut(s) 170, 262, 377
AsuHPI GGTGA 4 cut(s) 158, 233, 326, 499
AsuII TTCGAA 3 cut(s) 302, 531, 787
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 2 cut(s) 170, 262
BbsI GAAGAC 1 cut(s) 900
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 3 cut(s) 61, 64, 892
BccI CCATC 2 cut(s) 112, 318
BciVI GTATCC 1 cut(s) 1066
BclI TGATCA 1 cut(s) 742
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 3 cut(s) 407, 774, 1050
BfuI GTATCC 1 cut(s) 1066
BisI GCNGC 3 cut(s) 75, 78, 881
BlsI GCNGC 3 cut(s) 76, 79, 882
BmcAI AGTACT 1 cut(s) 482
Bme18I GGWCC 2 cut(s) 170, 262
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 3 cut(s) 170, 262, 377
BmiI GGNNCC 4 cut(s) 172, 379, 507, 1090
BmsI GCATC 2 cut(s) 346, 676
BpiI GAAGAC 1 cut(s) 900
BpmI CTGGAG 2 cut(s) 443, 1078
Bpu14I TTCGAA 3 cut(s) 302, 531, 787
BsaAI YACGTR 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 865, 1003
Bse1I ACTGG 1 cut(s) 1095
BseAI TCCGGA 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 3 cut(s) 123, 691, 799
BseLI CCNNNNNNNGG 3 cut(s) 385, 865, 1003
BseMII CTCAG 4 cut(s) 287, 651, 845, 932
BseNI ACTGG 1 cut(s) 1095
BseXI GCAGC 3 cut(s) 61, 64, 892
Bsh1236I CGCG 1 cut(s) 571
BshFI GGCC 2 cut(s) 378, 948
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 509
BslI CCNNNNNNNGG 3 cut(s) 385, 865, 1003
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 2 cut(s) 378, 948
BsoBI CYCGRG 1 cut(s) 90
Bsp119I TTCGAA 3 cut(s) 302, 531, 787
Bsp1286I GDGCHC 1 cut(s) 566
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 5 cut(s) 274, 572, 742, 838, 954
Bsp68I TCGCGA 1 cut(s) 571
BspACI CCGC 1 cut(s) 70
BspANI GGCC 2 cut(s) 378, 948
BspCNI CTCAG 4 cut(s) 288, 652, 844, 931
BspEI TCCGGA 1 cut(s) 508
BspFNI CGCG 1 cut(s) 571
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 4 cut(s) 172, 379, 507, 1090
BspMAI CTGCAG 3 cut(s) 411, 778, 1054
BspPI GGATC 1 cut(s) 567
BspQI GCTCTTC 2 cut(s) 87, 443
BspT104I TTCGAA 3 cut(s) 302, 531, 787
BsrI ACTGG 1 cut(s) 1095
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 5 cut(s) 274, 572, 742, 838, 954
Bst4CI ACNGT 2 cut(s) 187, 206
Bst6I CTCTTC 4 cut(s) 87, 219, 252, 443
BstBAI YACGTR 1 cut(s) 51
BstBI TTCGAA 3 cut(s) 302, 531, 787
BstC8I GCNNGC 5 cut(s) 72, 346, 738, 778, 878
BstDEI CTNAG 7 cut(s) 296, 320, 660, 831, 860, 884, 918
BstENI CCTNNNNNAGG 1 cut(s) 863
BstF5I GGATG 3 cut(s) 123, 691, 799
BstFNI CGCG 1 cut(s) 571
BstKTI GATC 5 cut(s) 277, 575, 745, 841, 957
BstMBI GATC 5 cut(s) 274, 572, 742, 838, 954
BstMWI GCNNNNNNNGC 1 cut(s) 549
BstNSI RCATGY 2 cut(s) 729, 880
BstSFI CTRYAG 3 cut(s) 407, 774, 1050
BstUI CGCG 1 cut(s) 571
BstV1I GCAGC 3 cut(s) 61, 64, 892
BstV2I GAAGAC 1 cut(s) 900
BstXI CCANNNNNNTGG 1 cut(s) 905
BsuI GTATCC 1 cut(s) 1066
BsuRI GGCC 2 cut(s) 378, 948
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 3 cut(s) 123, 691, 799
BtsIMutI CAGTG 2 cut(s) 183, 211
BtuMI TCGCGA 1 cut(s) 571
Cac8I GCNNGC 5 cut(s) 72, 346, 738, 778, 878
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 3 cut(s) 170, 262, 377
CseI GACGC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 481
CviAII CATG 5 cut(s) 272, 341, 726, 877, 962
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 7 cut(s) 296, 320, 660, 831, 860, 884, 918
DpnI GATC 5 cut(s) 276, 574, 744, 840, 956
DpnII GATC 5 cut(s) 274, 572, 742, 838, 954
DraIII CACNNNGTG 1 cut(s) 197
Eam1104I CTCTTC 4 cut(s) 87, 219, 252, 443
EarI CTCTTC 4 cut(s) 87, 219, 252, 443
Eco47I GGWCC 2 cut(s) 170, 262
Eco57I CTGAAG 2 cut(s) 68, 963
Eco88I CYCGRG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 863
EcoO109I RGGNCCY 2 cut(s) 170, 262
EcoT22I ATGCAT 1 cut(s) 727
FaeI CATG 5 cut(s) 275, 344, 729, 880, 965
FalI AAGNNNNNCTT 6 cut(s) 249, 281, 624, 656, 885, 917
FatI CATG 5 cut(s) 271, 340, 725, 876, 961
FauI CCCGC 1 cut(s) 63
FauNDI CATATG 1 cut(s) 853
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 3 cut(s) 75, 78, 881
FokI GGATG 3 cut(s) 130, 698, 806
Fsp4HI GCNGC 3 cut(s) 75, 78, 881
FspBI CTAG 1 cut(s) 716
GluI GCNGC 3 cut(s) 75, 78, 881
GsuI CTGGAG 2 cut(s) 443, 1078
HaeIII GGCC 2 cut(s) 378, 948
HapII CCGG 1 cut(s) 509
HgaI GACGC 1 cut(s) 668
Hin1II CATG 5 cut(s) 275, 344, 729, 880, 965
HindIII AAGCTT 4 cut(s) 401, 734, 927, 1056
HinfI GANTC 2 cut(s) 328, 770
HpaII CCGG 1 cut(s) 509
HphI GGTGA 4 cut(s) 158, 233, 326, 499
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 5 cut(s) 297, 396, 834, 921, 973
Hpy188III TCNNGA 8 cut(s) 92, 272, 460, 509, 570, 683, 890, 935
Hpy8I GTNNAC 1 cut(s) 769
HpyAV CCTTC 7 cut(s) 297, 347, 484, 493, 527, 857, 938
HpyCH4III ACNGT 2 cut(s) 187, 206
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 8 cut(s) 409, 649, 713, 725, 764, 776, 880, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 549
HpyF3I CTNAG 7 cut(s) 296, 320, 660, 831, 860, 884, 918
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 5 cut(s) 275, 344, 729, 880, 965
Kpn2I TCCGGA 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 5 cut(s) 274, 572, 742, 838, 954
LguI GCTCTTC 2 cut(s) 87, 443
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 3 cut(s) 61, 64, 892
LweI GCATC 2 cut(s) 346, 676
MaeI CTAG 1 cut(s) 716
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 187
MalI GATC 5 cut(s) 276, 574, 744, 840, 956
MboI GATC 5 cut(s) 274, 572, 742, 838, 954
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 6 cut(s) 651, 674, 842, 967, 976, 999
MlyI GAGTC 2 cut(s) 322, 764
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 1 cut(s) 508
MseI TTAA 2 cut(s) 671, 1108
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 586
MvnI CGCG 1 cut(s) 571
MwoI GCNNNNNNNGC 1 cut(s) 549
NdeI CATATG 1 cut(s) 853
NdeII GATC 5 cut(s) 274, 572, 742, 838, 954
NlaIII CATG 5 cut(s) 275, 344, 729, 880, 965
NlaIV GGNNCC 4 cut(s) 172, 379, 507, 1090
NmuCI GTSAC 1 cut(s) 187
NruI TCGCGA 1 cut(s) 571
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 2 cut(s) 729, 880
NspV TTCGAA 3 cut(s) 302, 531, 787
PaeI GCATGC 1 cut(s) 880
PagI TCATGA 1 cut(s) 271
PciSI GCTCTTC 2 cut(s) 87, 443
PctI GAATGC 1 cut(s) 586
PflMI CCANNNNNTGG 1 cut(s) 1003
PkrI GCNGC 3 cut(s) 76, 79, 882
PleI GAGTC 2 cut(s) 322, 764
PpsI GAGTC 2 cut(s) 322, 764
Ppu21I YACGTR 1 cut(s) 51
PpuMI RGGWCCY 2 cut(s) 170, 262
Psp5II RGGWCCY 2 cut(s) 170, 262
PspN4I GGNNCC 4 cut(s) 172, 379, 507, 1090
PspPI GGNCC 3 cut(s) 170, 262, 377
PspPPI RGGWCCY 2 cut(s) 170, 262
PstI CTGCAG 3 cut(s) 411, 778, 1054
PstNI CAGNNNCTG 1 cut(s) 67
RruI TCGCGA 1 cut(s) 571
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 339
SapI GCTCTTC 2 cut(s) 87, 443
SaqAI TTAA 2 cut(s) 671, 1108
SatI GCNGC 3 cut(s) 75, 78, 881
Sau3AI GATC 5 cut(s) 274, 572, 742, 838, 954
Sau96I GGNCC 3 cut(s) 170, 262, 377
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 2 cut(s) 322, 764
SduI GDGCHC 1 cut(s) 566
SfaNI GCATC 2 cut(s) 346, 676
SfcI CTRYAG 3 cut(s) 407, 774, 1050
SfuI TTCGAA 3 cut(s) 302, 531, 787
SinI GGWCC 2 cut(s) 170, 262
SmiMI CAYNNNNRTG 1 cut(s) 339
SphI GCATGC 1 cut(s) 880
Sse9I AATT 6 cut(s) 651, 674, 842, 967, 976, 999
SsiI CCGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 716
TaaI ACNGT 2 cut(s) 187, 206
TaiI ACGT 1 cut(s) 53
TaqI TCGA 3 cut(s) 302, 531, 787
TasI AATT 6 cut(s) 651, 674, 842, 967, 976, 999
TatI WGTACW 1 cut(s) 480
Tru1I TTAA 2 cut(s) 671, 1108
Tru9I TTAA 2 cut(s) 671, 1108
TscAI CASTG 2 cut(s) 190, 211
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 3 cut(s) 74, 77, 880
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 329, 969
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 2 cut(s) 190, 211
Van91I CCANNNNNTGG 1 cut(s) 1003
VpaK11BI GGWCC 2 cut(s) 170, 262
XagI CCTNNNNNAGG 1 cut(s) 863
XapI RAATTY 3 cut(s) 967, 976, 999
XceI RCATGY 2 cut(s) 729, 880
XmiI GTMKAC 1 cut(s) 768
XspI CTAG 1 cut(s) 716
ZrmI AGTACT 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.