Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012464

Physical Location & Seq

Genomic Coordinates Reverse (-)

4047012 .. 4048704

Gene Structure 1693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATGCAGTCGAGAGAGGAGATCAGAGATGATTCATCATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACAGAGCTTCACGAACGCTTCGTTGACGCCGTCACTCACCTTGGAGGCCCTGAAAAGGCTACACCAAAGACAATAATGAGAGTTATGGGTGTGAAGGGTCTCACTCTTTATCATCTCAAGAGCCATCTCCAGAAGTTCAGACTTGGGAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTTGTATTAGAGATACAAATAGAGCTTCCATGTTGGATCTTCGAAGGAATGCTGTTTTCACGACTAGTCCGCTCATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAGAGGAAGAGGTAGTAATAGAAAGACAGGTGAATCAAAGGATAGCGGCACAAGGGAAATACATGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAGCCTCACTAAAGACTACTCTACTCTATTTTTCGACCGCACCAATATTTGTAACAACACATCGTCCATCCCAATCCCATGGTTCGAGGATCATTTTCCTTCCTCTTCCTCCATGGACTCTACGTTGATTCTCCCCGACATCAATTCCAACTTCTCCCTACAAGATTCTAGGAGTTCCATCACTAAGGGCCGTACGGTTTGTCTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

235

Amino Acids

26.93

Weight (kDa)

8.36

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	25 - 75	1.9e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	124 - 163	4.6e-12	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06020 AT3G12730 AT3G12730
fragaria_vesca	FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica	MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica	Prupe.3G192100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155181
rosa_laevigata	RLG00000020824
rosa_multiflora	Rmu_sc0004976.1_g000035
rosa_roxburghii	Rroxscaffold_2G00093890
rosa_rugosa	Rorug02G0445800
rosa_samantha	Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana	Rw2G042070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	343
AciI	CCGC	3 cut(s)	341, 440, 535
AclWI	GGATC	2 cut(s)	315, 594
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	1 cut(s)	142
AhlI	ACTAGT	1 cut(s)	335
AluBI	AGCT	2 cut(s)	94, 296
AluI	AGCT	2 cut(s)	94, 296
Alw26I	GTCTC	3 cut(s)	50, 191, 704
AlwI	GGATC	2 cut(s)	315, 594
AoxI	GGCC	2 cut(s)	133, 685
ApeKI	GCWGC	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	84, 134, 685
AsuHPI	GGTGA	3 cut(s)	46, 116, 436
AsuII	TTCGAA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	3 cut(s)	219, 572, 683
BceAI	ACGGC	2 cut(s)	101, 672
BcoDI	GTCTC	3 cut(s)	50, 191, 704
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	2 cut(s)	336, 666
BisI	GCNGC	2 cut(s)	239, 441
BlsI	GCNGC	2 cut(s)	240, 442
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	3 cut(s)	84, 134, 685
BmsI	GCATC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	2 cut(s)	50, 191
BsaJI	CCNNGG	3 cut(s)	127, 575, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseDI	CCNNGG	3 cut(s)	127, 575, 609
BseGI	GGATG	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	535
BshFI	GGCC	2 cut(s)	135, 687
BsiEI	CGRYCG	1 cut(s)	535
BsiWI	CGTACG	1 cut(s)	689
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	3 cut(s)	50, 191, 704
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	135, 687
Bso31I	GGTCTC	2 cut(s)	50, 191
Bsp119I	TTCGAA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	21, 307, 586
Bsp19I	CCATGG	2 cut(s)	575, 609
BspACI	CCGC	3 cut(s)	341, 440, 535
BspANI	GGCC	2 cut(s)	135, 687
BspPI	GGATC	2 cut(s)	315, 594
BspT104I	TTCGAA	1 cut(s)	313
BspTNI	GGTCTC	2 cut(s)	50, 191
BsrBI	CCGCTC	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	127, 575, 609
BssMI	GATC	3 cut(s)	21, 307, 586
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	3 cut(s)	127, 575, 609
Bst4CI	ACNGT	1 cut(s)	694
Bst6I	CTCTTC	2 cut(s)	396, 607
BstACI	GRCGYC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	2 cut(s)	66, 681
BstDSI	CCRYGG	2 cut(s)	575, 609
BstF5I	GGATG	1 cut(s)	564
BstKTI	GATC	3 cut(s)	24, 310, 589
BstMAI	GTCTC	3 cut(s)	50, 191, 704
BstMBI	GATC	3 cut(s)	21, 307, 586
BstMCI	CGRYCG	1 cut(s)	535
BstNSI	RCATGY	2 cut(s)	469, 483
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	135, 687
BtgI	CCRYGG	2 cut(s)	575, 609
BtsCI	GGATG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	499
Cfr13I	GGNCC	3 cut(s)	84, 134, 685
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	6 cut(s)	301, 457, 466, 480, 576, 610
CviJI	RGCY	9 cut(s)	70, 94, 135, 146, 210, 241, 296, 501, 687
CviKI_1	RGCY	9 cut(s)	70, 94, 135, 146, 210, 241, 296, 501, 687
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	2 cut(s)	66, 681
DpnI	GATC	3 cut(s)	23, 309, 588
DpnII	GATC	3 cut(s)	21, 307, 586
Eam1104I	CTCTTC	2 cut(s)	396, 607
EarI	CTCTTC	2 cut(s)	396, 607
Eco130I	CCWWGG	3 cut(s)	127, 575, 609
Eco31I	GGTCTC	2 cut(s)	50, 191
Eco47I	GGWCC	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	134
EcoT14I	CCWWGG	3 cut(s)	127, 575, 609
ErhI	CCWWGG	3 cut(s)	127, 575, 609
FaeI	CATG	6 cut(s)	304, 460, 469, 483, 579, 613
FaiI	YATR	9 cut(s)	173, 255, 302, 362, 458, 467, 481, 577, 611
FatI	CATG	6 cut(s)	300, 456, 465, 479, 575, 609
Fnu4HI	GCNGC	2 cut(s)	239, 441
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	2 cut(s)	239, 441
FspBI	CTAG	2 cut(s)	336, 666
GluI	GCNGC	2 cut(s)	239, 441
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	135, 687
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	304, 460, 469, 483, 579, 613
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	5 cut(s)	32, 427, 614, 625, 662
HphI	GGTGA	3 cut(s)	46, 116, 436
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	26, 227
Hpy188III	TCNNGA	5 cut(s)	12, 98, 205, 217, 331
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	5 cut(s)	86, 175, 309, 384, 606
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	3 cut(s)	7, 373, 385
HpyF3I	CTNAG	2 cut(s)	66, 681
HpySE526I	ACGT	1 cut(s)	620
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	304, 460, 469, 483, 579, 613
Kzo9I	GATC	3 cut(s)	21, 307, 586
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	27, 67, 150, 230, 407
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	336, 666
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	2 cut(s)	118, 548
MalI	GATC	3 cut(s)	23, 309, 588
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	3 cut(s)	21, 307, 586
MboII	GAAGA	3 cut(s)	302, 413, 594
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	1 cut(s)	640
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	285, 669
Mva1269I	GAATGC	1 cut(s)	325
NcoI	CCATGG	2 cut(s)	575, 609
NdeII	GATC	3 cut(s)	21, 307, 586
NlaIII	CATG	6 cut(s)	304, 460, 469, 483, 579, 613
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	2 cut(s)	469, 483
NspV	TTCGAA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 114
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	4 cut(s)	32, 427, 625, 662
Pfl23II	CGTACG	1 cut(s)	689
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	240, 442
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PspLI	CGTACG	1 cut(s)	689
PspPI	GGNCC	3 cut(s)	84, 134, 685
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
SatI	GCNGC	2 cut(s)	239, 441
Sau3AI	GATC	3 cut(s)	21, 307, 586
Sau96I	GGNCC	3 cut(s)	84, 134, 685
SchI	GAGTC	1 cut(s)	608
SetI	ASST	8 cut(s)	46, 96, 129, 298, 384, 408, 426, 623
SfaNI	GCATC	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	313
SinI	GGWCC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	1 cut(s)	640
SsiI	CCGC	3 cut(s)	341, 440, 535
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	2 cut(s)	336, 666
StyI	CCWWGG	3 cut(s)	127, 575, 609
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	4 cut(s)	11, 313, 531, 582
TasI	AATT	1 cut(s)	640
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	4 cut(s)	32, 427, 625, 662
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	24, 377
TspRI	CASTG	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	84
XceI	RCATGY	2 cut(s)	469, 483
XspI	CTAG	2 cut(s)	336, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.