FvH4_6g40170
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012464
Physical Location & Seq
Reverse (-)
31718087 .. 31720296
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40170.t1

Sequence Viewer

Length: 996 bp
ATGTTTGGTTGTGAAGAAGAGCAAGGACTTCAAGGACCCCGAGCCCCGAATATGGATCACGGTGTTGCAGAGGGTGAAGAAGAGGAGGAGGAAGTAGAACAGGAAGAGAGCTCAAATGATCACAGTGATTCTCATATTAAACCAGTAGCTCCTCCTTACGTCCCTCCTTGTTATAAACTCAATTCTCGGCTTCGGTGGACTTCTGACCTTCATGCCAGTTTTCTTGATGCTGTCTCTCAGCTTGGTGGCCCTCATAAGGCAACTCCAAAGTCGATTATGCACATAATGGGTGTTCAGGGACTAACGCTTTTCCAAGTGAAGAGCCACCTCCAGAAGTACAGACTTGGAAAGTATGGAATGAAGGAGTGGAGAGAGGGGTCTAGTTCCAGAACAGAGGACACAGTTTCACAGGTCTTGAAACGGCAAGAGACTGTTACTAGTACTCCTTCCTTGAGCTTGCTGCTACCCCATGAGAATGAGATTAATGAACTGAGTCAGGAACTGGAACGCCGGAAGGAAGCTCAAGAGAAACTTCGTCTGCGAAATGAGGTTCAGAAGCATTTGCAACTGCGTCAAGAAGCTCAAAGCAGATATTTAAGTCGTGCAGTTGAGAATGCATGTGAAAAGCTTGCTCATCAATTTCTTGGTGGCTGTGCTGCAGACTATGCAGGTGTGTTTGAACAAAATGCTGCTGGTGTAGAAATTATGGGTTCAAAACCACATCAAAAGGATCTACATCTAAACCCTGCATATCATATGACTCAGACTATGCAGCTTAGTTTTGAAAACCAAATCGCTAGTTCTCAACCTCCGAGTGAAGCCCATTTTGCAACCGGAGACCACCTGATCTCAGATGAGCATTCAAGAAATTCATCTGTGCAACATCTCCTAACTTTCAAGATAGATGTGAATAGAGAGGATGAGAGTTTGGTTGATGACCCTGCAGAAGCTTATTTGATTTTGGATACTTCTGAAATGGGAAGTGGCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

332

Amino Acids

37.18

Weight (kDa)

5.33

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 63 - 114 5.1e-07 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 173 - 208 1.6e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 659
AclWI GGATC 2 cut(s) 63, 738
AcsI RAATTY 1 cut(s) 868
AfaI GTAC 2 cut(s) 338, 442
AfiI CCNNNNNNNGG 2 cut(s) 52, 256
AgsI TTSAA 7 cut(s) 32, 418, 680, 714, 785, 864, 898
AhlI ACTAGT 1 cut(s) 437
AluBI AGCT 9 cut(s) 111, 149, 241, 456, 521, 581, 628, 775, 950
AluI AGCT 9 cut(s) 111, 149, 241, 456, 521, 581, 628, 775, 950
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 3 cut(s) 238, 422, 831
AlwI GGATC 2 cut(s) 63, 738
AlwNI CAGNNNCTG 1 cut(s) 502
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 4 cut(s) 460, 656, 689, 772
ApoI RAATTY 1 cut(s) 868
AseI ATTAAT 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 35, 248
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 35
BanII GRGCYC 2 cut(s) 46, 113
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 4 cut(s) 447, 643, 676, 784
BceAI ACGGC 1 cut(s) 437
BciVI GTATCC 1 cut(s) 958
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 3 cut(s) 238, 422, 831
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 3 cut(s) 381, 438, 798
BfmI CTRYAG 2 cut(s) 657, 942
BfuAI ACCTGC 1 cut(s) 659
BfuI GTATCC 1 cut(s) 958
BisI GCNGC 4 cut(s) 461, 657, 690, 773
BlsI GCNGC 4 cut(s) 462, 658, 691, 774
BmcAI AGTACT 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 35, 248
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 2 cut(s) 472, 507
BsaBI GATNNNNATC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 831
BsaWI WCCGGW 1 cut(s) 833
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 256
Bse1I ACTGG 3 cut(s) 143, 216, 507
Bse8I GATNNNNATC 1 cut(s) 735
BseGI GGATG 1 cut(s) 925
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 2 cut(s) 52, 256
BseMII CTCAG 4 cut(s) 251, 482, 776, 864
BseNI ACTGG 3 cut(s) 143, 216, 507
BseRI GAGGAG 3 cut(s) 98, 101, 141
BseXI GCAGC 4 cut(s) 447, 643, 676, 784
BsgI GTGCAG 1 cut(s) 624
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 2 cut(s) 511, 834
BslFI GGGAC 2 cut(s) 146, 312
BslI CCNNNNNNNGG 2 cut(s) 52, 256
BsmAI GTCTC 3 cut(s) 238, 422, 831
BsmFI GGGAC 2 cut(s) 146, 312
BsmI GAATGC 2 cut(s) 619, 859
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 831
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 46, 113
Bsp143I GATC 4 cut(s) 55, 118, 730, 846
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 4 cut(s) 250, 483, 775, 863
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 2 cut(s) 661, 946
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 2 cut(s) 63, 738
BspQI GCTCTTC 2 cut(s) 12, 314
BspTNI GGTCTC 1 cut(s) 831
BsrI ACTGG 3 cut(s) 143, 216, 507
BssMI GATC 4 cut(s) 55, 118, 730, 846
Bst4CI ACNGT 4 cut(s) 62, 125, 403, 433
Bst6I CTCTTC 4 cut(s) 12, 75, 99, 314
BstAPI GCANNNNNTGC 1 cut(s) 665
BstC8I GCNNGC 2 cut(s) 458, 630
BstDEI CTNAG 5 cut(s) 237, 491, 762, 776, 850
BstF5I GGATG 1 cut(s) 925
BstKTI GATC 4 cut(s) 58, 121, 733, 849
BstMAI GTCTC 3 cut(s) 238, 422, 831
BstMBI GATC 4 cut(s) 55, 118, 730, 846
BstMWI GCNNNNNNNGC 2 cut(s) 665, 827
BstNSI RCATGY 1 cut(s) 621
BstSFI CTRYAG 2 cut(s) 657, 942
BstV1I GCAGC 4 cut(s) 447, 643, 676, 784
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 925
BtsIMutI CAGTG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 2 cut(s) 458, 630
CaiI CAGNNNCTG 1 cut(s) 502
Cfr13I GGNCC 2 cut(s) 35, 248
CseI GACGC 1 cut(s) 560
Csp6I GTAC 2 cut(s) 337, 441
CviAII CATG 3 cut(s) 212, 470, 618
CviQI GTAC 2 cut(s) 337, 441
DdeI CTNAG 5 cut(s) 237, 491, 762, 776, 850
DpnI GATC 4 cut(s) 57, 120, 732, 848
DpnII GATC 4 cut(s) 55, 118, 730, 846
Eam1104I CTCTTC 4 cut(s) 12, 75, 99, 314
EarI CTCTTC 4 cut(s) 12, 75, 99, 314
Ecl136II GAGCTC 1 cut(s) 111
Eco24I GRGCYC 2 cut(s) 46, 113
Eco31I GGTCTC 1 cut(s) 831
Eco47I GGWCC 1 cut(s) 35
Eco53kI GAGCTC 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 2 cut(s) 46, 113
FaeI CATG 3 cut(s) 215, 473, 621
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 2 cut(s) 146, 312
FatI CATG 3 cut(s) 211, 469, 617
FauNDI CATATG 1 cut(s) 756
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 461, 657, 690, 773
FokI GGATG 1 cut(s) 932
FriOI GRGCYC 2 cut(s) 46, 113
Fsp4HI GCNGC 4 cut(s) 461, 657, 690, 773
FspBI CTAG 3 cut(s) 381, 438, 798
GluI GCNGC 4 cut(s) 461, 657, 690, 773
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 249
HapII CCGG 2 cut(s) 511, 834
HgaI GACGC 1 cut(s) 560
Hin1II CATG 3 cut(s) 215, 473, 621
HindIII AAGCTT 2 cut(s) 626, 948
HinfI GANTC 3 cut(s) 128, 493, 760
HpaII CCGG 2 cut(s) 511, 834
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 6 cut(s) 205, 555, 765, 813, 853, 973
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 4 cut(s) 218, 355, 456, 508
HpyCH4III ACNGT 4 cut(s) 62, 125, 403, 433
HpyCH4IV ACGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 827
HpyF3I CTNAG 5 cut(s) 237, 491, 762, 776, 850
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 3 cut(s) 215, 473, 621
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 55, 118, 730, 846
LguI GCTCTTC 2 cut(s) 12, 314
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 4 cut(s) 447, 643, 676, 784
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 381, 438, 798
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 433
MalI GATC 4 cut(s) 57, 120, 732, 848
MboI GATC 4 cut(s) 55, 118, 730, 846
MboII GAAGA 6 cut(s) 26, 29, 89, 92, 116, 331
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 2 cut(s) 46, 113
MluCI AATT 4 cut(s) 181, 638, 702, 868
MlyI GAGTC 2 cut(s) 502, 754
Mph1103I ATGCAT 1 cut(s) 619
MseI TTAA 3 cut(s) 138, 483, 596
MslI CAYNNNNRTG 1 cut(s) 474
MspI CCGG 2 cut(s) 511, 834
Mva1269I GAATGC 2 cut(s) 619, 859
MwoI GCNNNNNNNGC 2 cut(s) 665, 827
NdeI CATATG 1 cut(s) 756
NdeII GATC 4 cut(s) 55, 118, 730, 846
NlaIII CATG 3 cut(s) 215, 473, 621
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 1 cut(s) 621
PaqCI CACCTGC 1 cut(s) 659
PciSI GCTCTTC 2 cut(s) 12, 314
PctI GAATGC 2 cut(s) 619, 859
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 4 cut(s) 462, 658, 691, 774
PleI GAGTC 2 cut(s) 501, 754
PpsI GAGTC 2 cut(s) 501, 754
PpuMI RGGWCCY 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 483
PsiI TTATAA 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 35, 248
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 2 cut(s) 661, 946
PstNI CAGNNNCTG 1 cut(s) 502
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 2 cut(s) 338, 442
RsaNI GTAC 2 cut(s) 337, 441
RseI CAYNNNNRTG 1 cut(s) 474
SacI GAGCTC 1 cut(s) 113
SapI GCTCTTC 2 cut(s) 12, 314
SaqAI TTAA 3 cut(s) 138, 483, 596
SatI GCNGC 4 cut(s) 461, 657, 690, 773
Sau3AI GATC 4 cut(s) 55, 118, 730, 846
Sau96I GGNCC 2 cut(s) 35, 248
ScaI AGTACT 1 cut(s) 442
SchI GAGTC 2 cut(s) 502, 754
SduI GDGCHC 2 cut(s) 46, 113
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 2 cut(s) 657, 942
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 451, 522
SmoI CTYRAG 2 cut(s) 451, 522
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 4 cut(s) 181, 638, 702, 868
SspMI CTAG 3 cut(s) 381, 438, 798
SstI GAGCTC 1 cut(s) 113
TaaI ACNGT 4 cut(s) 62, 125, 403, 433
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 272
TasI AATT 4 cut(s) 181, 638, 702, 868
TatI WGTACW 2 cut(s) 336, 440
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 3 cut(s) 138, 483, 596
Tru9I TTAA 3 cut(s) 138, 483, 596
TscAI CASTG 1 cut(s) 130
TseI GCWGC 4 cut(s) 460, 656, 689, 772
TspDTI ATGAA 4 cut(s) 200, 374, 501, 861
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 1 cut(s) 868
XceI RCATGY 1 cut(s) 621
XspI CTAG 3 cut(s) 381, 438, 798
ZrmI AGTACT 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.