Rh2DG532500
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012464
Physical Location & Seq
Reverse (-)
76240731 .. 76242385
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG532500.1

Sequence Viewer

Length: 1011 bp
ATGTTTGGTTTTGGGGAAGAACAAGGATTTCAAGGACCCCTGACCCCGAATATGGATCGCGGTGTTGTTGAGGGTGAAGAAGAGGAGGAGGAAGAAGAACAGGAAGAGAACTCAAGTGATCACAGTAGTTCTCAGATTGAACCAGTAGCTCTTCCTTACGTTCCTTCTAGTTATAAGCTCAAATCTCGGCTTAGGTGGAGTGCTGACCTTCATGCCAGTTTTGTTGATGCTGTCTATCAGCTTGGTGGCCCTCATAAGGCAACTCCAAAGTCGATTATGCAAATAATGGATGTTAAGGGACTATCGCTTTTCCACGTGAAGAGCCACCTCCAGAAGTACAGACTTGGAAAGTATGGAGTGAAGGAGTGGCGAGATGGGAGTAGTTCCAGAACAGTTTCAGAGATCTTGAAAGGGCAAAACGGTGGTACTACTAGTACTCCTTCCTTGAGCTTGCTGCAACCCCATGAGAATGAGATTTGTGAACTGAGTCAGGATCTGAAAGCCCGGAAGGAAGCTCAAGAGAAACTTCGTCTGCGAAATGAGGTTAAGAAGCATTTGCAATTGCGTAAAGAAGCCCAAAGCAGATATTTAAGTCGTGCAGTAGAGAATGCATGTGAAAAGCTTGCCCATCAATTTCTTGGAGGCTGTGCAGCAGATTATGCAGGTGTGTTTGGACAAAATGCTGCTGGTTTAGAAAGTATGGGGTCAATACCACATCAGAAGGATCTAGATCTATACCCTGCATATCATATGACTCAGATTATGCAGCCTAGTTTTGACAACCAACTTGGTAGTTTTGGAAACCAACTTGGTAGCTTTCAGCCTGAGAGTGAAGCCTATTTTGCAACCGGAGACCACCCGATCTCAGCTGGGCATTCAGGAAATTCATCCGTGCAAGATTTCCCAACTTTCGATACAGATGGGAATAACGAGGTTGAGAGTTTGGATGATGACCCTGCAGAAACTTATTTGATTCTGGATACTGCTGAAAATGGAAGTGACGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.15

Weight (kDa)

4.87

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 166 - 206 1.7e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 653
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 63, 501, 732
AcsI RAATTY 1 cut(s) 883
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 3 cut(s) 338, 427, 436
AfiI CCNNNNNNNGG 2 cut(s) 52, 256
AgsI TTSAA 3 cut(s) 32, 140, 409
AhlI ACTAGT 1 cut(s) 431
AluBI AGCT 8 cut(s) 149, 178, 241, 450, 515, 622, 816, 869
AluI AGCT 8 cut(s) 149, 178, 241, 450, 515, 622, 816, 869
Alw26I GTCTC 1 cut(s) 846
AlwI GGATC 3 cut(s) 63, 501, 732
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 4 cut(s) 454, 650, 683, 766
ApoI RAATTY 1 cut(s) 883
Asp700I GAANNNNTTC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 35, 248
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 316
BbvI GCAGC 4 cut(s) 441, 662, 670, 778
BccI CCATC 3 cut(s) 368, 636, 914
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 846
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 4 cut(s) 168, 432, 728, 771
BfmI CTRYAG 1 cut(s) 957
BfuAI ACCTGC 1 cut(s) 653
BfuI GTATCC 1 cut(s) 973
BglII AGATCT 2 cut(s) 402, 730
BisI GCNGC 4 cut(s) 455, 651, 684, 767
BlsI GCNGC 4 cut(s) 456, 652, 685, 768
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 248
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 3 cut(s) 97, 466, 501
BpuMI CCSGG 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 846
BsaWI WCCGGW 1 cut(s) 848
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 256
Bse1I ACTGG 2 cut(s) 143, 216
Bse8I GATNNNNATC 1 cut(s) 729
BseGI GGATG 3 cut(s) 295, 887, 952
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 2 cut(s) 52, 256
BseMII CTCAG 5 cut(s) 146, 476, 770, 816, 879
BseNI ACTGG 2 cut(s) 143, 216
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 4 cut(s) 441, 662, 670, 778
BseYI CCCAGC 1 cut(s) 869
BsgI GTGCAG 2 cut(s) 618, 669
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 2 cut(s) 505, 849
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 52, 256
BsmAI GTCTC 1 cut(s) 846
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 2 cut(s) 613, 874
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 846
Bsp143I GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 5 cut(s) 145, 477, 769, 817, 878
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 961
BspMI ACCTGC 1 cut(s) 653
BspPI GGATC 3 cut(s) 63, 501, 732
BspQI GCTCTTC 2 cut(s) 156, 314
BspTNI GGTCTC 1 cut(s) 846
BsrI ACTGG 2 cut(s) 143, 216
BssMI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
Bst4CI ACNGT 3 cut(s) 125, 394, 422
Bst6I CTCTTC 4 cut(s) 75, 99, 156, 314
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 452, 624
BstDEI CTNAG 6 cut(s) 132, 191, 485, 756, 825, 865
BstF5I GGATG 3 cut(s) 295, 887, 952
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 7 cut(s) 58, 121, 405, 496, 727, 733, 864
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
BstMWI GCNNNNNNNGC 2 cut(s) 659, 842
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 441, 662, 670, 778
BstX2I RGATCY 4 cut(s) 402, 493, 724, 730
BstYI RGATCY 4 cut(s) 402, 493, 724, 730
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 3 cut(s) 295, 887, 952
BveI ACCTGC 1 cut(s) 653
Cac8I GCNNGC 2 cut(s) 452, 624
CaiI CAGNNNCTG 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 35, 248
Csp6I GTAC 3 cut(s) 337, 426, 435
CviAII CATG 3 cut(s) 212, 464, 612
CviQI GTAC 3 cut(s) 337, 426, 435
DdeI CTNAG 6 cut(s) 132, 191, 485, 756, 825, 865
DpnI GATC 7 cut(s) 57, 120, 404, 495, 726, 732, 863
DpnII GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
Eam1104I CTCTTC 4 cut(s) 75, 99, 156, 314
EarI CTCTTC 4 cut(s) 75, 99, 156, 314
Eco31I GGTCTC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 613
FaeI CATG 3 cut(s) 215, 467, 615
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 1 cut(s) 312
FatI CATG 3 cut(s) 211, 463, 611
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 455, 651, 684, 767
FokI GGATG 3 cut(s) 302, 874, 959
Fsp4HI GCNGC 4 cut(s) 455, 651, 684, 767
FspBI CTAG 4 cut(s) 168, 432, 728, 771
GluI GCNGC 4 cut(s) 455, 651, 684, 767
GsaI CCCAGC 1 cut(s) 873
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 249
HapII CCGG 2 cut(s) 505, 849
Hin1II CATG 3 cut(s) 215, 467, 615
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 4 cut(s) 487, 754, 973, 1004
HpaII CCGG 2 cut(s) 505, 849
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 5 cut(s) 135, 400, 498, 720, 759
Hpy188III TCNNGA 9 cut(s) 331, 387, 406, 491, 518, 728, 879, 977, 1008
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 6 cut(s) 174, 218, 355, 450, 502, 715
HpyCH4III ACNGT 3 cut(s) 125, 394, 422
HpyCH4IV ACGT 2 cut(s) 159, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 842
HpyF3I CTNAG 6 cut(s) 132, 191, 485, 756, 825, 865
HpySE526I ACGT 2 cut(s) 159, 315
Hsp92II CATG 3 cut(s) 215, 467, 615
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
LguI GCTCTTC 2 cut(s) 156, 314
Lsp1109I GCAGC 4 cut(s) 441, 662, 670, 778
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 168, 432, 728, 771
MaeII ACGT 2 cut(s) 159, 315
MaeIII GTNAC 1 cut(s) 998
MalI GATC 7 cut(s) 57, 120, 404, 495, 726, 732, 863
MboI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
MboII GAAGA 8 cut(s) 29, 89, 92, 104, 107, 116, 143, 331
MfeI CAATTG 1 cut(s) 560
MflI RGATCY 4 cut(s) 402, 493, 724, 730
MluCI AATT 3 cut(s) 560, 632, 883
MlyI GAGTC 2 cut(s) 496, 748
MnlI CCTC 9 cut(s) 64, 76, 79, 82, 261, 338, 535, 635, 925
Mph1103I ATGCAT 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 3 cut(s) 294, 546, 590
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 869
MspI CCGG 2 cut(s) 505, 849
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 560
Mva1269I GAATGC 2 cut(s) 613, 874
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 659, 842
NciI CCSGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 750
NdeII GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
NlaIII CATG 3 cut(s) 215, 467, 615
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 998
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 615
PaqCI CACCTGC 1 cut(s) 653
PciSI GCTCTTC 2 cut(s) 156, 314
PctI GAATGC 2 cut(s) 613, 874
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 973
PkrI GCNGC 4 cut(s) 456, 652, 685, 768
PleI GAGTC 2 cut(s) 495, 748
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 2 cut(s) 495, 748
Ppu21I YACGTR 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 35
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 35
PspCI CACGTG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 869
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 35, 248
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 961
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 4 cut(s) 402, 493, 724, 730
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 3 cut(s) 338, 427, 436
RsaNI GTAC 3 cut(s) 337, 426, 435
RseI CAYNNNNRTG 1 cut(s) 468
SapI GCTCTTC 2 cut(s) 156, 314
SaqAI TTAA 3 cut(s) 294, 546, 590
SatI GCNGC 4 cut(s) 455, 651, 684, 767
Sau3AI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
Sau96I GGNCC 2 cut(s) 35, 248
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 2 cut(s) 496, 748
ScrFI CCNGG 1 cut(s) 505
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 3 cut(s) 112, 445, 516
SmoI CTYRAG 3 cut(s) 112, 445, 516
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 3 cut(s) 560, 632, 883
SsiI CCGC 1 cut(s) 60
SspMI CTAG 4 cut(s) 168, 432, 728, 771
StyD4I CCNGG 1 cut(s) 503
TaaI ACNGT 3 cut(s) 125, 394, 422
TaiI ACGT 2 cut(s) 162, 318
TaqI TCGA 2 cut(s) 272, 912
TasI AATT 3 cut(s) 560, 632, 883
TatI WGTACW 2 cut(s) 336, 434
TfiI GAWTC 1 cut(s) 973
Tru1I TTAA 3 cut(s) 294, 546, 590
Tru9I TTAA 3 cut(s) 294, 546, 590
TseFI GTSAC 1 cut(s) 998
TseI GCWGC 4 cut(s) 454, 650, 683, 766
Tsp45I GTSAC 1 cut(s) 998
TspDTI ATGAA 2 cut(s) 200, 876
TspGWI ACGGA 1 cut(s) 880
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 883
XbaI TCTAGA 1 cut(s) 727
XceI RCATGY 1 cut(s) 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 4 cut(s) 168, 432, 728, 771
ZrmI AGTACT 1 cut(s) 436
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.