RchiOBHm_Chr2g0155181
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012464
Physical Location & Seq
Reverse (-)
72163838 .. 72164418
581 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52408

Sequence Viewer

Length: 366 bp
ATGGATCGCGGTGTTGTTGAGGGTGAAGAAGAGGAGGAGGAAGAAGAACAGGAAGAGAACTCAAGTGATCACAGTAGTTCTCAGATTGAACCAGTAGCTCTTCCTTACGTTCCTTCTAGTTATAAGCTCAAATCTCGGCTTAGGTGGAGTGCTGACCTTCATGCCAGTTTTGTTGATGCTGTCTATCAGCTTGGTGGCCCTCATAAGGCAACTCCAAAGTCGATTATGCAAATAATGGATGTTAAGGGACTATCGCTTTTCCACGTGAAGAGCCACCTCCAGAAGTACAGACTTGGAAAGTATGGAGTGAAGGAGTGGCGAGATGGGAGTAGTTCCAGAACAGGTATGACCGATCGATCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

5.72

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AccII CGCG 1 cut(s) 9
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 12
AcvI CACGTG 1 cut(s) 265
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 3 cut(s) 98, 127, 190
AluI AGCT 3 cut(s) 98, 127, 190
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 265
BccI CCATC 1 cut(s) 317
BclI TGATCA 1 cut(s) 67
BfaI CTAG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 92, 165
BseCI ATCGAT 1 cut(s) 355
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 92, 165
BseRI GAGGAG 2 cut(s) 47, 50
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 355
BsiEI CGRYCG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 198
Bsp143I GATC 4 cut(s) 4, 67, 352, 356
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 355
BspFNI CGCG 1 cut(s) 9
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 2 cut(s) 105, 263
BsrI ACTGG 2 cut(s) 92, 165
BssMI GATC 4 cut(s) 4, 67, 352, 356
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 4 cut(s) 24, 48, 105, 263
BstBAI YACGTR 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 81, 140
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 4 cut(s) 7, 70, 355, 359
BstMBI GATC 4 cut(s) 4, 67, 352, 356
BstMCI CGRYCG 1 cut(s) 355
BstUI CGCG 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 355
BsuRI GGCC 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 355
BtsCI GGATG 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 355
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 161
CviJI RGCY 6 cut(s) 98, 127, 139, 190, 198, 273
CviKI_1 RGCY 6 cut(s) 98, 127, 139, 190, 198, 273
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 81, 140
DpnI GATC 4 cut(s) 6, 69, 354, 358
DpnII GATC 4 cut(s) 4, 67, 352, 356
Eam1104I CTCTTC 4 cut(s) 24, 48, 105, 263
EarI CTCTTC 4 cut(s) 24, 48, 105, 263
Eco72I CACGTG 1 cut(s) 265
FaeI CATG 1 cut(s) 164
FaiI YATR 6 cut(s) 123, 162, 204, 227, 303, 347
FaqI GGGAC 1 cut(s) 261
FatI CATG 1 cut(s) 160
FbaI TGATCA 1 cut(s) 67
FokI GGATG 1 cut(s) 251
FspBI CTAG 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 1 cut(s) 198
Hin1II CATG 1 cut(s) 164
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 280, 336
HpyAV CCTTC 3 cut(s) 123, 167, 304
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 2 cut(s) 108, 264
HpyCH4V TGCA 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 81, 140
HpySE526I ACGT 2 cut(s) 108, 264
Hsp92II CATG 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 4 cut(s) 4, 67, 352, 356
LguI GCTCTTC 2 cut(s) 105, 263
LpnPI CCDG 6 cut(s) 35, 105, 178, 293, 327, 349
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 108, 264
MalI GATC 4 cut(s) 6, 69, 354, 358
MboI GATC 4 cut(s) 4, 67, 352, 356
MboII GAAGA 7 cut(s) 38, 41, 53, 56, 65, 92, 280
MnlI CCTC 6 cut(s) 13, 25, 28, 31, 210, 287
MseI TTAA 1 cut(s) 243
MvnI CGCG 1 cut(s) 9
NdeII GATC 4 cut(s) 4, 67, 352, 356
NlaIII CATG 1 cut(s) 164
NmeAIII GCCGAG 1 cut(s) 115
PciSI GCTCTTC 2 cut(s) 105, 263
Ple19I CGATCG 1 cut(s) 355
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 265
PsiI TTATAA 1 cut(s) 123
PspCI CACGTG 1 cut(s) 265
PspPI GGNCC 1 cut(s) 197
PvuI CGATCG 1 cut(s) 355
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SapI GCTCTTC 2 cut(s) 105, 263
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 4 cut(s) 4, 67, 352, 356
Sau96I GGNCC 1 cut(s) 197
SetI ASST 9 cut(s) 100, 111, 129, 146, 159, 192, 267, 279, 346
SfaNI GCATC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 2 cut(s) 111, 267
TaqI TCGA 2 cut(s) 221, 355
TaqII GACCGA 1 cut(s) 365
TatI WGTACW 1 cut(s) 285
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 149
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.