RLG00000020824
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012464
Physical Location & Seq
Reverse (-)
69155747 .. 69157310
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020824

Sequence Viewer

Length: 954 bp
ATGTTTGGTTTTGGGGAAGAACAAGGATTTCAAGCAACCCTGACCCCGAATATGGATCGCGGTGTTGTTGAGGGTGAAGAAGAGGAGGAGGAAGAAGAACAGGAAGAGAACTCAAGTGATCACAGTAGTTCTCAGATTGAACCAGTAGCTCGTCCTTACGTTCCTTCTCGTTATAAGCTCAAATCTCGGCTTAGGTGGAGTGCTGACCTTCATGCCAGTTTTGTTGATGCTGTCTATCAGCTTGGTGGCCCTCATAAGGCAACTCCAAAGTCGATTATGCAAATAATGGATGTTAAGGGACTATCGCTTTTCCACGTGAAGAGCCACCTCCAGAAGTACAGACTTGGAAAGTATGGAGTGAAGGAGTGGCGAGATGGGAGTAGTTCCAGAACAGCTGACGACTATTCGACATATAGGATTTGTGAACTGAGTCAGGATCTGAAAGCCCGGAAGGAAGCTCAAGAGAAACTTCGTCTGCGAAATGAGGTTAAGAAGCATTTGCAATTGCGTAAAGAAGCCCAAAGCAGATATTTAAGTCGTGCAGTAGAGAATGCATGTGAAAAGCTTGCTCATCAATTTCTTGGAGGCTGTGCAGCAGATTATGCAGGTGTGTTTAGACAAAATGCTGCTGGTTTAGAAACTATGGAGTCAATACCACATCAGAAGGATCTAGATCGATACCCTGCATATCATATGACTCAGATTATGCAGCCTAGTTTTGACAACCAACTTGGTAGTTTTGGAAACCAACTTGGTAGCTTTCAGCCTGAGAGTGAAGCCTATTTTGCAACCGGAGACCACCTGATCTCAGGTGGGCATTCAGGAAATTCATCTGTGCAAGATTTCCCAATTGTCGATACAGATGGGAATAACGAGGTTGAGATTTTGGATGATGACCCTGCAGAAACTTATTTGATTCTGGATACTGCTGAAAATGGAAGTGGCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

318

Amino Acids

35.6

Weight (kDa)

5.16

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 147 - 187 3.3e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 596
Acc36I ACCTGC 1 cut(s) 596
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 63, 444, 675
AcsI RAATTY 1 cut(s) 826
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 52, 256
AgsI TTSAA 2 cut(s) 32, 140
AluBI AGCT 7 cut(s) 149, 178, 241, 395, 458, 565, 759
AluI AGCT 7 cut(s) 149, 178, 241, 395, 458, 565, 759
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 3 cut(s) 63, 444, 675
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 3 cut(s) 593, 626, 709
ApoI RAATTY 1 cut(s) 826
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 86
BbrPI CACGTG 1 cut(s) 316
BbvI GCAGC 3 cut(s) 605, 613, 721
BccI CCATC 2 cut(s) 368, 857
BciVI GTATCC 1 cut(s) 916
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 448
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 2 cut(s) 671, 714
BfmI CTRYAG 1 cut(s) 900
BfuAI ACCTGC 1 cut(s) 596
BfuI GTATCC 1 cut(s) 916
BisI GCNGC 3 cut(s) 594, 627, 710
BlsI GCNGC 3 cut(s) 595, 628, 711
Bme1390I CCNGG 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 448
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 97, 444
BpuMI CCSGG 1 cut(s) 448
Bsa29I ATCGAT 1 cut(s) 676
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 672
BsaI GGTCTC 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 791
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 256
Bse1I ACTGG 2 cut(s) 143, 216
Bse8I GATNNNNATC 1 cut(s) 672
BseCI ATCGAT 1 cut(s) 676
BseGI GGATG 2 cut(s) 295, 895
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 52, 256
BseMII CTCAG 5 cut(s) 146, 419, 713, 759, 822
BseNI ACTGG 2 cut(s) 143, 216
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 3 cut(s) 605, 613, 721
BsgI GTGCAG 2 cut(s) 561, 612
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 249
BshVI ATCGAT 1 cut(s) 676
BsiSI CCGG 2 cut(s) 448, 792
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 52, 256
BsmAI GTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 2 cut(s) 556, 817
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 789
Bsp143I GATC 6 cut(s) 55, 118, 436, 667, 673, 804
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 5 cut(s) 145, 420, 712, 760, 821
BspDI ATCGAT 1 cut(s) 676
BspFNI CGCG 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 1 cut(s) 596
BspPI GGATC 3 cut(s) 63, 444, 675
BspQI GCTCTTC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 789
BsrI ACTGG 2 cut(s) 143, 216
BssMI GATC 6 cut(s) 55, 118, 436, 667, 673, 804
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 3 cut(s) 75, 99, 314
BstAPI GCANNNNNTGC 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 6 cut(s) 132, 191, 428, 699, 768, 808
BstF5I GGATG 2 cut(s) 295, 895
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 6 cut(s) 58, 121, 439, 670, 676, 807
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 6 cut(s) 55, 118, 436, 667, 673, 804
BstMWI GCNNNNNNNGC 2 cut(s) 602, 785
BstNSI RCATGY 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 446
BstSFI CTRYAG 1 cut(s) 900
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 605, 613, 721
BstX2I RGATCY 2 cut(s) 436, 667
BstYI RGATCY 2 cut(s) 436, 667
Bsu15I ATCGAT 1 cut(s) 676
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 1 cut(s) 249
BsuTUI ATCGAT 1 cut(s) 676
BtsCI GGATG 2 cut(s) 295, 895
BveI ACCTGC 1 cut(s) 596
Cac8I GCNNGC 1 cut(s) 567
CaiI CAGNNNCTG 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 676
Csp6I GTAC 1 cut(s) 337
CviAII CATG 2 cut(s) 212, 555
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 6 cut(s) 132, 191, 428, 699, 768, 808
DpnI GATC 6 cut(s) 57, 120, 438, 669, 675, 806
DpnII GATC 6 cut(s) 55, 118, 436, 667, 673, 804
Eam1104I CTCTTC 3 cut(s) 75, 99, 314
EarI CTCTTC 3 cut(s) 75, 99, 314
Eco31I GGTCTC 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 556
FaeI CATG 2 cut(s) 215, 558
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 312
FatI CATG 2 cut(s) 211, 554
FauNDI CATATG 1 cut(s) 693
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 594, 627, 710
FokI GGATG 2 cut(s) 302, 902
Fsp4HI GCNGC 3 cut(s) 594, 627, 710
FspBI CTAG 2 cut(s) 671, 714
GluI GCNGC 3 cut(s) 594, 627, 710
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 249
HapII CCGG 2 cut(s) 448, 792
Hin1II CATG 2 cut(s) 215, 558
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 4 cut(s) 430, 647, 697, 916
HpaII CCGG 2 cut(s) 448, 792
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 4 cut(s) 135, 441, 663, 702
Hpy188III TCNNGA 8 cut(s) 331, 387, 434, 461, 671, 822, 920, 951
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 5 cut(s) 174, 218, 355, 445, 658
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 159, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 785
HpyF3I CTNAG 6 cut(s) 132, 191, 428, 699, 768, 808
HpySE526I ACGT 2 cut(s) 159, 315
Hsp92II CATG 2 cut(s) 215, 558
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 6 cut(s) 55, 118, 436, 667, 673, 804
LguI GCTCTTC 1 cut(s) 314
Lsp1109I GCAGC 3 cut(s) 605, 613, 721
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 671, 714
MaeII ACGT 2 cut(s) 159, 315
MalI GATC 6 cut(s) 57, 120, 438, 669, 675, 806
MboI GATC 6 cut(s) 55, 118, 436, 667, 673, 804
MboII GAAGA 7 cut(s) 29, 89, 92, 104, 107, 116, 331
MfeI CAATTG 2 cut(s) 503, 849
MflI RGATCY 2 cut(s) 436, 667
MluCI AATT 4 cut(s) 503, 575, 826, 849
MlyI GAGTC 3 cut(s) 439, 656, 691
MnlI CCTC 9 cut(s) 64, 76, 79, 82, 261, 338, 478, 578, 868
Mph1103I ATGCAT 1 cut(s) 556
MseI TTAA 3 cut(s) 294, 489, 533
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 448, 792
MspR9I CCNGG 1 cut(s) 448
MunI CAATTG 2 cut(s) 503, 849
Mva1269I GAATGC 2 cut(s) 556, 817
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 602, 785
NciI CCSGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 693
NdeII GATC 6 cut(s) 55, 118, 436, 667, 673, 804
NlaIII CATG 2 cut(s) 215, 558
NmeAIII GCCGAG 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 558
PaqCI CACCTGC 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 2 cut(s) 556, 817
PfeI GAWTC 1 cut(s) 916
PkrI GCNGC 3 cut(s) 595, 628, 711
PleI GAGTC 3 cut(s) 438, 655, 691
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 3 cut(s) 438, 655, 691
Ppu21I YACGTR 1 cut(s) 316
PsiI TTATAA 1 cut(s) 174
PspCI CACGTG 1 cut(s) 316
PspPI GGNCC 1 cut(s) 248
PstI CTGCAG 1 cut(s) 904
PstNI CAGNNNCTG 1 cut(s) 439
PsuI RGATCY 2 cut(s) 436, 667
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 3 cut(s) 294, 489, 533
SatI GCNGC 3 cut(s) 594, 627, 710
Sau3AI GATC 6 cut(s) 55, 118, 436, 667, 673, 804
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 3 cut(s) 439, 656, 691
ScrFI CCNGG 1 cut(s) 448
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 900
SmlI CTYRAG 2 cut(s) 112, 459
SmoI CTYRAG 2 cut(s) 112, 459
Sse9I AATT 4 cut(s) 503, 575, 826, 849
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 671, 714
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 162, 318
TaqI TCGA 4 cut(s) 272, 407, 676, 855
TasI AATT 4 cut(s) 503, 575, 826, 849
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 3 cut(s) 294, 489, 533
Tru9I TTAA 3 cut(s) 294, 489, 533
TseI GCWGC 3 cut(s) 593, 626, 709
TspDTI ATGAA 2 cut(s) 200, 819
XapI RAATTY 1 cut(s) 826
XbaI TCTAGA 1 cut(s) 670
XceI RCATGY 1 cut(s) 558
XspI CTAG 2 cut(s) 671, 714
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.