MD17G1123500.v1.1
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0012464
Physical Location & Seq
Forward (+)
10745870 .. 10746966
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1123500.v1.1.491

Sequence Viewer

Length: 423 bp
ATGGTTGGTTTTGGTTGTAGTGGTGGTGATGAACAGGATTTTCAAGGATCTTTTCCGACTCCTATCGTCACTCGTAGCGATGACAGAGTTGTTCTCGAGGGTGGGGAGGCGGCGGTGGTCGAGCAGGTTGATCGTGAAACTCGTTATCTTCAGCTGCCTCAAGACTGTGTTCTTAAAGCAAAGCTCAGACCCCGACTTCAATGGACTCCTGAGCTTCATACCCGCTTTGTTGATGCTGTCAATCAGCTTGGAGGCCCTCACAAGTCAACTCCGAAGAAAGTTCAGCAGGCAATGGGTATCCAGGGAATAACTCTTTTCCAAGTGAAGAGCCACCTCCAGAAATACAGACTTGGAAGGTACTCAGGGAAGGAATGGACGGAGGGGACACGAATCTGTATGTTCTTCCTAAAAACTTATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

141

Amino Acids

15.86

Weight (kDa)

9.07

Isoelectric Point (pI)

24.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 66 - 116 1.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AciI CCGC 3 cut(s) 110, 113, 223
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 359
AgsI TTSAA 2 cut(s) 44, 200
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 4 cut(s) 154, 184, 214, 247
AluI AGCT 4 cut(s) 154, 184, 214, 247
AlwI GGATC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 95
BbvI GCAGC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 115
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 2 cut(s) 111, 155
BlsI GCNGC 2 cut(s) 112, 156
Bme1390I CCNGG 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 199, 201, 375
BseXI GCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 2 cut(s) 47, 130
BspACI CCGC 3 cut(s) 110, 113, 223
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 3 cut(s) 198, 202, 374
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 1 cut(s) 55
BspQI GCTCTTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 47, 130
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 3 cut(s) 185, 210, 361
BstKTI GATC 2 cut(s) 50, 133
BstMBI GATC 2 cut(s) 47, 130
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 358
CviJI RGCY 6 cut(s) 154, 184, 214, 247, 255, 330
CviKI_1 RGCY 6 cut(s) 154, 184, 214, 247, 255, 330
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 3 cut(s) 185, 210, 361
DpnI GATC 2 cut(s) 49, 132
DpnII GATC 2 cut(s) 47, 130
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 300
FaiI YATR 2 cut(s) 219, 398
FaqI GGGAC 1 cut(s) 397
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 111, 155
Fsp4HI GCNGC 2 cut(s) 111, 155
GluI GCNGC 2 cut(s) 111, 155
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 3 cut(s) 58, 205, 390
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 57, 188, 273
Hpy188III TCNNGA 5 cut(s) 95, 134, 161, 209, 337
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 348, 361
HpyCH4III ACNGT 1 cut(s) 167
HpyF3I CTNAG 3 cut(s) 185, 210, 361
Kzo9I GATC 2 cut(s) 47, 130
LguI GCTCTTC 1 cut(s) 320
LpnPI CCDG 8 cut(s) 20, 110, 222, 272, 287, 314, 348, 350
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 49, 132
MboI GATC 2 cut(s) 47, 130
MboII GAAGA 4 cut(s) 140, 286, 337, 394
MflI RGATCY 1 cut(s) 47
MlyI GAGTC 2 cut(s) 52, 199
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 7 cut(s) 91, 100, 168, 245, 267, 344, 373
MseI TTAA 2 cut(s) 174, 421
MspA1I CMGCKG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 2 cut(s) 47, 130
NmuCI GTSAC 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 2 cut(s) 112, 156
PleI GAGTC 2 cut(s) 52, 199
PpsI GAGTC 2 cut(s) 52, 199
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 174, 421
SatI GCNGC 2 cut(s) 111, 155
Sau3AI GATC 2 cut(s) 47, 130
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 2 cut(s) 52, 199
ScrFI CCNGG 1 cut(s) 302
SetI ASST 7 cut(s) 129, 156, 186, 216, 249, 336, 359
SfaNI GCATC 1 cut(s) 223
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 159
SmoI CTYRAG 2 cut(s) 95, 159
SsiI CCGC 3 cut(s) 110, 113, 223
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 96, 120
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 174, 421
Tru9I TTAA 2 cut(s) 174, 421
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 45, 206
TspGWI ACGGA 1 cut(s) 392
XhoI CTCGAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.