Rw2G042070
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012464
Physical Location & Seq
Reverse (-)
68329166 .. 68330741
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042070.1

Sequence Viewer

Length: 1020 bp
ATGTTTGGTTTTGGGGAAGAACAAGGATTTCAAGGACCCCTGACCCCGAATATGGATCGCGGTGTTGTTGAGGGTGAAGAAGAGGAGGAGGAAGAAGAACAGGAAGAGAACTCAAGTGATCACAGTAGTTCTCAGATTGAACCAGTAGCTCTTCCTTACGTTCCTTCTAGTTATAAGCTCAAATCTCGGCTTAGGTGGAGTGCTGACCTTCATGCCAGTTTTGTTGATGCTGTCTATCAGCTTGGTGGCCCTCATAAGGCAACTCCAAAGTCGATTATGCAAATAATGGATGTTAAGGGACTATCGCTTTTCCACGTGAAGAGCCACCTCCAGAAGTACAGACTTGGAAAGTATGGAGTGAAGGAGTGGCGAGATGGGAGTAGTTCCAGAACAGAGAACACAGTTTCAGAGGTCTTGAAAGGGCAAAACGGTGGTACTACTAGTACTCCTTCCTTGAGCTTGCTGCAACCCCATGAGAATGAGATTTGTGAACTGAGTCAGGATCTGAAAGCCCGGAAGGAAGCTCAAGAGAAACTTCGTCTGCGAAATGAGGTTAAGAAGCATTTGCAATTGCGTAAAGAAGCCCAAAGCAGATATTTAAGTCGTGCAGTAGAGAATGCATGTGAAAAGCTTGCCCATCAATTTCTTGGAGGCTGTGCAGCAGATTATGCAGGTGTGTTTGGACAAAATGCTGCTGGTTTAGAAAGTATGGGGTCAATACCACATCAGAAGGATCTAGATCTATACCCTGCATATCATATGACTCAGATTATGCAGCCTAGTTTTGACAACCAACTTGGTAGTTTTGGAAACCAACTTGGTAGCTTTCAGCCTGAGAGTGAAGCCTATTTTGCAACCGGAGACCACCCGATCTCAGCTGGGCATTCAGGAAATTCATCCGTGCAAGATTTCCCAACTTTCGATACAGATGGGAATAACGAGGTTGAGATTTTGGATGATGACCCTGCAGAAACTTATTTGATTCTGGATACTGCTGAAAATGGAAGTGACGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.51

Weight (kDa)

4.83

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 169 - 209 1.8e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 662
Acc36I ACCTGC 1 cut(s) 662
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 63, 510, 741
AcsI RAATTY 1 cut(s) 892
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 3 cut(s) 338, 436, 445
AfiI CCNNNNNNNGG 2 cut(s) 52, 256
AgsI TTSAA 3 cut(s) 32, 140, 418
AhlI ACTAGT 1 cut(s) 440
AluBI AGCT 8 cut(s) 149, 178, 241, 459, 524, 631, 825, 878
AluI AGCT 8 cut(s) 149, 178, 241, 459, 524, 631, 825, 878
Alw26I GTCTC 1 cut(s) 855
AlwI GGATC 3 cut(s) 63, 510, 741
AlwNI CAGNNNCTG 1 cut(s) 505
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 4 cut(s) 463, 659, 692, 775
ApoI RAATTY 1 cut(s) 892
AspS9I GGNCC 2 cut(s) 35, 248
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 316
BbvI GCAGC 4 cut(s) 450, 671, 679, 787
BccI CCATC 3 cut(s) 368, 645, 923
BciVI GTATCC 1 cut(s) 982
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 855
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 4 cut(s) 168, 441, 737, 780
BfmI CTRYAG 1 cut(s) 966
BfuAI ACCTGC 1 cut(s) 662
BfuI GTATCC 1 cut(s) 982
BglII AGATCT 1 cut(s) 739
BisI GCNGC 4 cut(s) 464, 660, 693, 776
BlsI GCNGC 4 cut(s) 465, 661, 694, 777
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 514
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 248
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 514
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 3 cut(s) 97, 475, 510
BpuMI CCSGG 1 cut(s) 514
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 738
BsaI GGTCTC 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 857
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 256
Bse1I ACTGG 2 cut(s) 143, 216
Bse8I GATNNNNATC 1 cut(s) 738
BseGI GGATG 3 cut(s) 295, 896, 961
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 2 cut(s) 52, 256
BseMII CTCAG 5 cut(s) 146, 485, 779, 825, 888
BseNI ACTGG 2 cut(s) 143, 216
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 4 cut(s) 450, 671, 679, 787
BseYI CCCAGC 1 cut(s) 878
BsgI GTGCAG 2 cut(s) 627, 678
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 2 cut(s) 514, 858
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 52, 256
BsmAI GTCTC 1 cut(s) 855
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 2 cut(s) 622, 883
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 855
Bsp143I GATC 6 cut(s) 55, 118, 502, 733, 739, 870
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 5 cut(s) 145, 486, 778, 826, 887
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 1 cut(s) 662
BspPI GGATC 3 cut(s) 63, 510, 741
BspQI GCTCTTC 2 cut(s) 156, 314
BspTNI GGTCTC 1 cut(s) 855
BsrI ACTGG 2 cut(s) 143, 216
BssMI GATC 6 cut(s) 55, 118, 502, 733, 739, 870
Bst4CI ACNGT 3 cut(s) 125, 403, 431
Bst6I CTCTTC 4 cut(s) 75, 99, 156, 314
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 461, 633
BstDEI CTNAG 6 cut(s) 132, 191, 494, 765, 834, 874
BstF5I GGATG 3 cut(s) 295, 896, 961
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 6 cut(s) 58, 121, 505, 736, 742, 873
BstMAI GTCTC 1 cut(s) 855
BstMBI GATC 6 cut(s) 55, 118, 502, 733, 739, 870
BstMWI GCNNNNNNNGC 2 cut(s) 668, 851
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 1 cut(s) 512
BstSFI CTRYAG 1 cut(s) 966
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 450, 671, 679, 787
BstX2I RGATCY 3 cut(s) 502, 733, 739
BstYI RGATCY 3 cut(s) 502, 733, 739
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 3 cut(s) 295, 896, 961
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 2 cut(s) 461, 633
CaiI CAGNNNCTG 1 cut(s) 505
Cfr13I GGNCC 2 cut(s) 35, 248
Csp6I GTAC 3 cut(s) 337, 435, 444
CviAII CATG 3 cut(s) 212, 473, 621
CviQI GTAC 3 cut(s) 337, 435, 444
DdeI CTNAG 6 cut(s) 132, 191, 494, 765, 834, 874
DpnI GATC 6 cut(s) 57, 120, 504, 735, 741, 872
DpnII GATC 6 cut(s) 55, 118, 502, 733, 739, 870
Eam1104I CTCTTC 4 cut(s) 75, 99, 156, 314
EarI CTCTTC 4 cut(s) 75, 99, 156, 314
Eco31I GGTCTC 1 cut(s) 855
Eco47I GGWCC 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 622
FaeI CATG 3 cut(s) 215, 476, 624
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 312
FatI CATG 3 cut(s) 211, 472, 620
FauNDI CATATG 1 cut(s) 759
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 464, 660, 693, 776
FokI GGATG 3 cut(s) 302, 883, 968
Fsp4HI GCNGC 4 cut(s) 464, 660, 693, 776
FspBI CTAG 4 cut(s) 168, 441, 737, 780
GluI GCNGC 4 cut(s) 464, 660, 693, 776
GsaI CCCAGC 1 cut(s) 882
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 249
HapII CCGG 2 cut(s) 514, 858
Hin1II CATG 3 cut(s) 215, 476, 624
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 4 cut(s) 496, 763, 982, 1013
HpaII CCGG 2 cut(s) 514, 858
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 5 cut(s) 135, 409, 507, 729, 768
Hpy188III TCNNGA 9 cut(s) 331, 387, 415, 500, 527, 737, 888, 986, 1017
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 6 cut(s) 174, 218, 355, 459, 511, 724
HpyCH4III ACNGT 3 cut(s) 125, 403, 431
HpyCH4IV ACGT 2 cut(s) 159, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 851
HpyF3I CTNAG 6 cut(s) 132, 191, 494, 765, 834, 874
HpySE526I ACGT 2 cut(s) 159, 315
Hsp92II CATG 3 cut(s) 215, 476, 624
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 6 cut(s) 55, 118, 502, 733, 739, 870
LguI GCTCTTC 2 cut(s) 156, 314
Lsp1109I GCAGC 4 cut(s) 450, 671, 679, 787
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 168, 441, 737, 780
MaeII ACGT 2 cut(s) 159, 315
MaeIII GTNAC 1 cut(s) 1007
MalI GATC 6 cut(s) 57, 120, 504, 735, 741, 872
MboI GATC 6 cut(s) 55, 118, 502, 733, 739, 870
MboII GAAGA 8 cut(s) 29, 89, 92, 104, 107, 116, 143, 331
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 3 cut(s) 502, 733, 739
MluCI AATT 3 cut(s) 569, 641, 892
MlyI GAGTC 2 cut(s) 505, 757
Mph1103I ATGCAT 1 cut(s) 622
MseI TTAA 3 cut(s) 294, 555, 599
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 2 cut(s) 514, 858
MspR9I CCNGG 1 cut(s) 514
MunI CAATTG 1 cut(s) 569
Mva1269I GAATGC 2 cut(s) 622, 883
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 668, 851
NciI CCSGG 1 cut(s) 514
NdeI CATATG 1 cut(s) 759
NdeII GATC 6 cut(s) 55, 118, 502, 733, 739, 870
NlaIII CATG 3 cut(s) 215, 476, 624
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 1007
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 624
PaqCI CACCTGC 1 cut(s) 662
PciSI GCTCTTC 2 cut(s) 156, 314
PctI GAATGC 2 cut(s) 622, 883
PfeI GAWTC 1 cut(s) 982
PkrI GCNGC 4 cut(s) 465, 661, 694, 777
PleI GAGTC 2 cut(s) 504, 757
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 2 cut(s) 504, 757
Ppu21I YACGTR 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 35
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 35
PspCI CACGTG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 878
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 35, 248
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 505
PsuI RGATCY 3 cut(s) 502, 733, 739
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 3 cut(s) 338, 436, 445
RsaNI GTAC 3 cut(s) 337, 435, 444
RseI CAYNNNNRTG 1 cut(s) 477
SapI GCTCTTC 2 cut(s) 156, 314
SaqAI TTAA 3 cut(s) 294, 555, 599
SatI GCNGC 4 cut(s) 464, 660, 693, 776
Sau3AI GATC 6 cut(s) 55, 118, 502, 733, 739, 870
Sau96I GGNCC 2 cut(s) 35, 248
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 2 cut(s) 505, 757
ScrFI CCNGG 1 cut(s) 514
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 966
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 3 cut(s) 112, 454, 525
SmoI CTYRAG 3 cut(s) 112, 454, 525
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 3 cut(s) 569, 641, 892
SsiI CCGC 1 cut(s) 60
SspMI CTAG 4 cut(s) 168, 441, 737, 780
StyD4I CCNGG 1 cut(s) 512
TaaI ACNGT 3 cut(s) 125, 403, 431
TaiI ACGT 2 cut(s) 162, 318
TaqI TCGA 2 cut(s) 272, 921
TasI AATT 3 cut(s) 569, 641, 892
TatI WGTACW 2 cut(s) 336, 443
TfiI GAWTC 1 cut(s) 982
Tru1I TTAA 3 cut(s) 294, 555, 599
Tru9I TTAA 3 cut(s) 294, 555, 599
TseFI GTSAC 1 cut(s) 1007
TseI GCWGC 4 cut(s) 463, 659, 692, 775
Tsp45I GTSAC 1 cut(s) 1007
TspDTI ATGAA 2 cut(s) 200, 885
TspGWI ACGGA 1 cut(s) 889
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 892
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XspI CTAG 4 cut(s) 168, 441, 737, 780
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.