Rroxscaffold_2G00093890
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012464
Physical Location & Seq
Forward (+)
15215053 .. 15216670
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093890.1

Sequence Viewer

Length: 750 bp
ATGTTTGGTTTTGGGGAAGAACAAGGATTTCAAGTACCCCTGACCCCGAATATGGATCGCGGTGTTGTTGAGGGTGAAGAAGAGGAGGAGGAAGAAGAACAGGAAGAGAACTCAAGTGATCACAGTAGTTCTCAGATTGAACCAGTAGCTCTTCCTTACGTTCCTTCTCGTTATAAGCTCAAATCTCGGCTAAGGTGGAGTGCTGACCTTCATGCCAGTTTTGTTGATGCTAAGTACAGACTTGGAAAGTATGGAGTGAAGGAGTGGCGAGATGGGAGTAGTTCCAGAACAGCTGACGACTATTCGACATATAGGATTTGTGAACTGAGTCAGGATCTGAAAGCCCGGAAGGAAGCTCAAGAGAAACTTCGTCTGCGAAATGAGGCAAGTTCAGATTATGCAGGTGTGTTTGGACAAAATGCTGCTGGTTTAGAAACTATGGGGTCAATACCACATCAGAAGGATCTAGATCTATACCCTGCATTTCATATGACTCAGATTATGCAGCCTAGTTTTGACAACCAACTTGGTAGTTTTGGAAACCAACTTGGTAGCTTTCAGCCTGAGAGTGAAGCCTATTTTGCAACCGGAGACCACCTGATCTCAGCTGGGCATTCAGGAAATTCATCTGTGCAAGATTTCCCAACTTTCGATACAGATTGGAATAACGAGGTTGAGATTTTGGATGATGACCCTGCAGAAACTTATTTGATTCTGGATACTGCTGAAAAGGGAAGTGGCAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

249

Amino Acids

27.88

Weight (kDa)

4.48

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 392
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 63, 342, 471
AcsI RAATTY 1 cut(s) 622
AfaI GTAC 2 cut(s) 36, 236
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 2 cut(s) 32, 140
AluBI AGCT 6 cut(s) 149, 178, 293, 356, 555, 608
AluI AGCT 6 cut(s) 149, 178, 293, 356, 555, 608
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 3 cut(s) 63, 342, 471
AlwNI CAGNNNCTG 1 cut(s) 337
ApeKI GCWGC 2 cut(s) 422, 505
ApoI RAATTY 1 cut(s) 622
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 86
BbvI GCAGC 2 cut(s) 409, 517
BccI CCATC 1 cut(s) 266
BciVI GTATCC 1 cut(s) 712
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 585
BfaI CTAG 2 cut(s) 467, 510
BfmI CTRYAG 1 cut(s) 696
BfuAI ACCTGC 1 cut(s) 392
BfuI GTATCC 1 cut(s) 712
BglII AGATCT 1 cut(s) 469
BisI GCNGC 2 cut(s) 423, 506
BlsI GCNGC 2 cut(s) 424, 507
Bme1390I CCNGG 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 97, 342
BpuMI CCSGG 1 cut(s) 346
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 585
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 143, 216
Bse8I GATNNNNATC 1 cut(s) 468
BseGI GGATG 1 cut(s) 691
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 5 cut(s) 146, 317, 509, 555, 618
BseNI ACTGG 2 cut(s) 143, 216
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 2 cut(s) 409, 517
BseYI CCCAGC 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 346, 588
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 585
BsmI GAATGC 1 cut(s) 613
Bso31I GGTCTC 1 cut(s) 585
Bsp143I GATC 6 cut(s) 55, 118, 334, 463, 469, 600
BspACI CCGC 1 cut(s) 60
BspCNI CTCAG 5 cut(s) 145, 318, 508, 556, 617
BspFNI CGCG 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 3 cut(s) 63, 342, 471
BspQI GCTCTTC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 585
BsrI ACTGG 2 cut(s) 143, 216
BssMI GATC 6 cut(s) 55, 118, 334, 463, 469, 600
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 3 cut(s) 75, 99, 156
BstDEI CTNAG 7 cut(s) 132, 191, 231, 326, 495, 564, 604
BstF5I GGATG 1 cut(s) 691
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 6 cut(s) 58, 121, 337, 466, 472, 603
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 6 cut(s) 55, 118, 334, 463, 469, 600
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 344
BstSFI CTRYAG 1 cut(s) 696
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 2 cut(s) 409, 517
BstX2I RGATCY 3 cut(s) 334, 463, 469
BstYI RGATCY 3 cut(s) 334, 463, 469
BsuI GTATCC 1 cut(s) 712
BtsCI GGATG 1 cut(s) 691
BveI ACCTGC 1 cut(s) 392
CaiI CAGNNNCTG 1 cut(s) 337
Csp6I GTAC 2 cut(s) 35, 235
CviAII CATG 1 cut(s) 212
CviQI GTAC 2 cut(s) 35, 235
DdeI CTNAG 7 cut(s) 132, 191, 231, 326, 495, 564, 604
DpnI GATC 6 cut(s) 57, 120, 336, 465, 471, 602
DpnII GATC 6 cut(s) 55, 118, 334, 463, 469, 600
Eam1104I CTCTTC 3 cut(s) 75, 99, 156
EarI CTCTTC 3 cut(s) 75, 99, 156
Eco31I GGTCTC 1 cut(s) 585
FaeI CATG 1 cut(s) 215
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 1 cut(s) 211
FauNDI CATATG 1 cut(s) 489
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 423, 506
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 2 cut(s) 423, 506
FspBI CTAG 2 cut(s) 467, 510
GluI GCNGC 2 cut(s) 423, 506
GsaI CCCAGC 1 cut(s) 612
HapII CCGG 2 cut(s) 346, 588
Hin1II CATG 1 cut(s) 215
HinfI GANTC 3 cut(s) 328, 493, 712
HpaII CCGG 2 cut(s) 346, 588
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 5 cut(s) 135, 339, 394, 459, 498
Hpy188III TCNNGA 7 cut(s) 285, 332, 359, 467, 618, 716, 747
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 5 cut(s) 174, 218, 253, 343, 454
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 6 cut(s) 401, 482, 505, 584, 634, 698
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 7 cut(s) 132, 191, 231, 326, 495, 564, 604
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 6 cut(s) 55, 118, 334, 463, 469, 600
LguI GCTCTTC 1 cut(s) 156
Lsp1109I GCAGC 2 cut(s) 409, 517
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 467, 510
MaeII ACGT 1 cut(s) 159
MalI GATC 6 cut(s) 57, 120, 336, 465, 471, 602
MboI GATC 6 cut(s) 55, 118, 334, 463, 469, 600
MboII GAAGA 7 cut(s) 29, 89, 92, 104, 107, 116, 143
MflI RGATCY 3 cut(s) 334, 463, 469
MluCI AATT 1 cut(s) 622
MlyI GAGTC 2 cut(s) 337, 487
MnlI CCTC 6 cut(s) 64, 76, 79, 82, 376, 664
MspA1I CMGCKG 2 cut(s) 293, 608
MspI CCGG 2 cut(s) 346, 588
MspR9I CCNGG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 613
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 346
NdeI CATATG 1 cut(s) 489
NdeII GATC 6 cut(s) 55, 118, 334, 463, 469, 600
NlaIII CATG 1 cut(s) 215
NmeAIII GCCGAG 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 1 cut(s) 613
PfeI GAWTC 1 cut(s) 712
PkrI GCNGC 2 cut(s) 424, 507
PleI GAGTC 2 cut(s) 336, 487
PpsI GAGTC 2 cut(s) 336, 487
PsiI TTATAA 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 608
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 337
PsuI RGATCY 3 cut(s) 334, 463, 469
PvuII CAGCTG 2 cut(s) 293, 608
RsaI GTAC 2 cut(s) 36, 236
RsaNI GTAC 2 cut(s) 35, 235
SapI GCTCTTC 1 cut(s) 156
SatI GCNGC 2 cut(s) 423, 506
Sau3AI GATC 6 cut(s) 55, 118, 334, 463, 469, 600
SchI GAGTC 2 cut(s) 337, 487
ScrFI CCNGG 1 cut(s) 346
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 112, 357
SmoI CTYRAG 2 cut(s) 112, 357
Sse9I AATT 1 cut(s) 622
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 467, 510
StyD4I CCNGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 305, 651
TasI AATT 1 cut(s) 622
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 712
TseI GCWGC 2 cut(s) 422, 505
TspDTI ATGAA 3 cut(s) 200, 476, 615
XapI RAATTY 1 cut(s) 622
XbaI TCTAGA 1 cut(s) 466
XspI CTAG 2 cut(s) 467, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.