Rh2BG522800
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012464
Physical Location & Seq
Reverse (-)
73317002 .. 73318656
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG522800.1

Sequence Viewer

Length: 1011 bp
ATGTTTGGTTTTGGGGAAGAACAAGGATTTCAAGGACCCCTGACCCCGAATATGGATCGCGGTGTTGTTGAGGGTGAAGAAGAGGAGGAGGAAGAAGAACAGGAAGAGAACTCAAGTGATCACAGTAGTTCTCAGATTGAACCAGTAGCTCTTCCTTACGTTCCTTCTAGTTATAAGCTCAAATCTCGGCTTAGGTGGAGTGCTGACCTTCATGCCAGTTTTGTTGATGCTGTCTATCAGCTTGGTGGCCCTCATAAGGCAACTCCAAAGTCGATTATGCAAATAATGGATGTTAAGGGACTATCGCTTTTCCACGTGAAGAGCCACCTCCAGAAGTACAGACTTGGAAAGTATGGAGTGAAGGAGTGGCGAGATGGGAGTAGTTCCAGAACAGTTTCAGAGATCTTGAAAGGGCAAAACGGTGGTACTACTAGTACTCCTTCCTTGAGCTTGCTGCAACCCCATGAGAATGAGATTTGTGAACTGAGTCAGGATCTGAAAGCCCGGAAGGAAGCTCAAGAGAAACTTCGTCTGCGAAATGAGGTTAAGAAGCATTTGCAATTGCGTAAAGAAGCCCAAAGCAGATATTTAAGTCGTGCAGTAGAGAATGCATGTGAAAAGCTTGCCCATCAATTTCTTGGAGGCTGTGCAGCAGATTATGCAGGTGTGTTTGGACAAAATGCTGCTGGTTTAGAAAGTATGGGGTCAATACCACATCAGAAGGATCTAGATCTATACCCTGCATATCATATGACTCAGATTATGCAGCCTAGTTTTGACAACCAACTTGGTAGTTTTGGAAACCAACTTGGTAGCTTTCAGCCTGAGAGTGAAGCCTATTTTGCAACCGGAGACCACCCGATCTCAGCTGGGCATTCAGGAAATTCATCCGTGCAAGATTTCCCAACTTTCGATACAGATGGGAATAACGAGGTTGAGAGTTTGGATGATGACCCTGCAGAAACTTATTTGATTCTGGATACTGCTGAAAATGGAAGTGACGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

336

Amino Acids

37.15

Weight (kDa)

4.87

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 166 - 206 1.7e-06 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06020 AT3G12730 AT3G12730
fragaria_vesca FvH4_6g40170 FvH4_6g40170 FvH4_6g40170
malus_domestica MD09G1134600.v1.1 MD17G1123500.v1.1
prunus_persica Prupe.3G192100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0155181
rosa_laevigata RLG00000020824
rosa_multiflora Rmu_sc0004976.1_g000035
rosa_roxburghii Rroxscaffold_2G00093890
rosa_rugosa Rorug02G0445800
rosa_samantha Rh2AG512000 Rh2BG522800 Rh2CG497000 Rh2DG532500
rosa_wichuraiana Rw2G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 653
Acc36I ACCTGC 1 cut(s) 653
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 60
AclWI GGATC 3 cut(s) 63, 501, 732
AcsI RAATTY 1 cut(s) 883
AcvI CACGTG 1 cut(s) 316
AfaI GTAC 3 cut(s) 338, 427, 436
AfiI CCNNNNNNNGG 2 cut(s) 52, 256
AgsI TTSAA 3 cut(s) 32, 140, 409
AhlI ACTAGT 1 cut(s) 431
AluBI AGCT 8 cut(s) 149, 178, 241, 450, 515, 622, 816, 869
AluI AGCT 8 cut(s) 149, 178, 241, 450, 515, 622, 816, 869
Alw26I GTCTC 1 cut(s) 846
AlwI GGATC 3 cut(s) 63, 501, 732
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 4 cut(s) 454, 650, 683, 766
ApoI RAATTY 1 cut(s) 883
Asp700I GAANNNNTTC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 35, 248
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 316
BbvI GCAGC 4 cut(s) 441, 662, 670, 778
BccI CCATC 3 cut(s) 368, 636, 914
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 846
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 4 cut(s) 168, 432, 728, 771
BfmI CTRYAG 1 cut(s) 957
BfuAI ACCTGC 1 cut(s) 653
BfuI GTATCC 1 cut(s) 973
BglII AGATCT 2 cut(s) 402, 730
BisI GCNGC 4 cut(s) 455, 651, 684, 767
BlsI GCNGC 4 cut(s) 456, 652, 685, 768
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 248
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 3 cut(s) 97, 466, 501
BpuMI CCSGG 1 cut(s) 505
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 846
BsaWI WCCGGW 1 cut(s) 848
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 256
Bse1I ACTGG 2 cut(s) 143, 216
Bse8I GATNNNNATC 1 cut(s) 729
BseGI GGATG 3 cut(s) 295, 887, 952
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 2 cut(s) 52, 256
BseMII CTCAG 5 cut(s) 146, 476, 770, 816, 879
BseNI ACTGG 2 cut(s) 143, 216
BseRI GAGGAG 2 cut(s) 98, 101
BseXI GCAGC 4 cut(s) 441, 662, 670, 778
BseYI CCCAGC 1 cut(s) 869
BsgI GTGCAG 2 cut(s) 618, 669
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 2 cut(s) 505, 849
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 52, 256
BsmAI GTCTC 1 cut(s) 846
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 2 cut(s) 613, 874
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 846
Bsp143I GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 5 cut(s) 145, 477, 769, 817, 878
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 961
BspMI ACCTGC 1 cut(s) 653
BspPI GGATC 3 cut(s) 63, 501, 732
BspQI GCTCTTC 2 cut(s) 156, 314
BspTNI GGTCTC 1 cut(s) 846
BsrI ACTGG 2 cut(s) 143, 216
BssMI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
Bst4CI ACNGT 3 cut(s) 125, 394, 422
Bst6I CTCTTC 4 cut(s) 75, 99, 156, 314
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 452, 624
BstDEI CTNAG 6 cut(s) 132, 191, 485, 756, 825, 865
BstF5I GGATG 3 cut(s) 295, 887, 952
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 7 cut(s) 58, 121, 405, 496, 727, 733, 864
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
BstMWI GCNNNNNNNGC 2 cut(s) 659, 842
BstNSI RCATGY 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 503
BstSFI CTRYAG 1 cut(s) 957
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 4 cut(s) 441, 662, 670, 778
BstX2I RGATCY 4 cut(s) 402, 493, 724, 730
BstYI RGATCY 4 cut(s) 402, 493, 724, 730
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 3 cut(s) 295, 887, 952
BveI ACCTGC 1 cut(s) 653
Cac8I GCNNGC 2 cut(s) 452, 624
CaiI CAGNNNCTG 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 35, 248
Csp6I GTAC 3 cut(s) 337, 426, 435
CviAII CATG 3 cut(s) 212, 464, 612
CviQI GTAC 3 cut(s) 337, 426, 435
DdeI CTNAG 6 cut(s) 132, 191, 485, 756, 825, 865
DpnI GATC 7 cut(s) 57, 120, 404, 495, 726, 732, 863
DpnII GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
Eam1104I CTCTTC 4 cut(s) 75, 99, 156, 314
EarI CTCTTC 4 cut(s) 75, 99, 156, 314
Eco31I GGTCTC 1 cut(s) 846
Eco47I GGWCC 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 613
FaeI CATG 3 cut(s) 215, 467, 615
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 1 cut(s) 312
FatI CATG 3 cut(s) 211, 463, 611
FauNDI CATATG 1 cut(s) 750
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 455, 651, 684, 767
FokI GGATG 3 cut(s) 302, 874, 959
Fsp4HI GCNGC 4 cut(s) 455, 651, 684, 767
FspBI CTAG 4 cut(s) 168, 432, 728, 771
GluI GCNGC 4 cut(s) 455, 651, 684, 767
GsaI CCCAGC 1 cut(s) 873
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 1 cut(s) 249
HapII CCGG 2 cut(s) 505, 849
Hin1II CATG 3 cut(s) 215, 467, 615
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 4 cut(s) 487, 754, 973, 1004
HpaII CCGG 2 cut(s) 505, 849
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 5 cut(s) 135, 400, 498, 720, 759
Hpy188III TCNNGA 9 cut(s) 331, 387, 406, 491, 518, 728, 879, 977, 1008
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 6 cut(s) 174, 218, 355, 450, 502, 715
HpyCH4III ACNGT 3 cut(s) 125, 394, 422
HpyCH4IV ACGT 2 cut(s) 159, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 842
HpyF3I CTNAG 6 cut(s) 132, 191, 485, 756, 825, 865
HpySE526I ACGT 2 cut(s) 159, 315
Hsp92II CATG 3 cut(s) 215, 467, 615
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
LguI GCTCTTC 2 cut(s) 156, 314
Lsp1109I GCAGC 4 cut(s) 441, 662, 670, 778
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 168, 432, 728, 771
MaeII ACGT 2 cut(s) 159, 315
MaeIII GTNAC 1 cut(s) 998
MalI GATC 7 cut(s) 57, 120, 404, 495, 726, 732, 863
MboI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
MboII GAAGA 8 cut(s) 29, 89, 92, 104, 107, 116, 143, 331
MfeI CAATTG 1 cut(s) 560
MflI RGATCY 4 cut(s) 402, 493, 724, 730
MluCI AATT 3 cut(s) 560, 632, 883
MlyI GAGTC 2 cut(s) 496, 748
MnlI CCTC 9 cut(s) 64, 76, 79, 82, 261, 338, 535, 635, 925
Mph1103I ATGCAT 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 394
MseI TTAA 3 cut(s) 294, 546, 590
MslI CAYNNNNRTG 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 869
MspI CCGG 2 cut(s) 505, 849
MspR9I CCNGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 560
Mva1269I GAATGC 2 cut(s) 613, 874
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 659, 842
NciI CCSGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 750
NdeII GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
NlaIII CATG 3 cut(s) 215, 467, 615
NlaIV GGNNCC 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 998
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 615
PaqCI CACCTGC 1 cut(s) 653
PciSI GCTCTTC 2 cut(s) 156, 314
PctI GAATGC 2 cut(s) 613, 874
PdmI GAANNNNTTC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 973
PkrI GCNGC 4 cut(s) 456, 652, 685, 768
PleI GAGTC 2 cut(s) 495, 748
PmaCI CACGTG 1 cut(s) 316
PmlI CACGTG 1 cut(s) 316
PpsI GAGTC 2 cut(s) 495, 748
Ppu21I YACGTR 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 35
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 35
PspCI CACGTG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 869
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 35, 248
PspPPI RGGWCCY 1 cut(s) 35
PstI CTGCAG 1 cut(s) 961
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 4 cut(s) 402, 493, 724, 730
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 3 cut(s) 338, 427, 436
RsaNI GTAC 3 cut(s) 337, 426, 435
RseI CAYNNNNRTG 1 cut(s) 468
SapI GCTCTTC 2 cut(s) 156, 314
SaqAI TTAA 3 cut(s) 294, 546, 590
SatI GCNGC 4 cut(s) 455, 651, 684, 767
Sau3AI GATC 7 cut(s) 55, 118, 402, 493, 724, 730, 861
Sau96I GGNCC 2 cut(s) 35, 248
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 2 cut(s) 496, 748
ScrFI CCNGG 1 cut(s) 505
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 957
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 3 cut(s) 112, 445, 516
SmoI CTYRAG 3 cut(s) 112, 445, 516
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 3 cut(s) 560, 632, 883
SsiI CCGC 1 cut(s) 60
SspMI CTAG 4 cut(s) 168, 432, 728, 771
StyD4I CCNGG 1 cut(s) 503
TaaI ACNGT 3 cut(s) 125, 394, 422
TaiI ACGT 2 cut(s) 162, 318
TaqI TCGA 2 cut(s) 272, 912
TasI AATT 3 cut(s) 560, 632, 883
TatI WGTACW 2 cut(s) 336, 434
TfiI GAWTC 1 cut(s) 973
Tru1I TTAA 3 cut(s) 294, 546, 590
Tru9I TTAA 3 cut(s) 294, 546, 590
TseFI GTSAC 1 cut(s) 998
TseI GCWGC 4 cut(s) 454, 650, 683, 766
Tsp45I GTSAC 1 cut(s) 998
TspDTI ATGAA 2 cut(s) 200, 876
TspGWI ACGGA 1 cut(s) 880
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 1 cut(s) 883
XbaI TCTAGA 1 cut(s) 727
XceI RCATGY 1 cut(s) 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 394
XspI CTAG 4 cut(s) 168, 432, 728, 771
ZrmI AGTACT 1 cut(s) 436
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.