Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Forward (+)

2763449 .. 2765743

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G06850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACTGTTTCTTCATCTCCATGGGCTCTCATGGCTCTCTTTCTAATGGTTTCTTCAACAATGGTAATGGCTATTCCTCCACGCAAGGCCATTGATGTACCATTTGGTCGTAACTACGTCCCAACTTGGGCTTTTGACCACCAGAAACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACTGGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCACATAAAGCTTCCAGCTGGTGACACAGCCGGAGTTGTCACAGCTTTCTATCTATCATCTACCAACAATGAGCATGACGAGATAGACTTTGAGTTCCTTGGAAACAGAACAGGACAACCAGCTATATTACAGACAAATGTATTCACAGGAGGAAAGGGAAACAGAGAACAACGAATCTATCTCTGGTTTGATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCTAGGAGTACGTTTCCCATTCAACCAACCAATGAAGCTTTACTCAAGCCTTTGGAACGCGGATGATTGGGCCACGAGAGGCGGTTTAGAGAAGACCAATTGGGCCAATGCACCTTTCGTTGCATCTTACAAAGGATTCCACATAGATGGTTGCCAAGCTTCTGTGGAAGCCAAGTACTGTGCCACACAAGGCCGCATGTGGTGGGATCAGAAAGAGTTCCGTGACCTTGACGCTGAACAATGGCGTCGTCTCAAATGGGTTCGTATGAAGTGGACCATCTACAACTACTGTACCGACCGGACTAGGTTCCCGGTTATGCCAGCTGAATGTAAAAGGGACAGAGACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

296

Amino Acids

34.29

Weight (kDa)

9.03

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	4 - 155	5.6e-60	Glycosyl hydrolases family 16
XET_C	PF06955	185 - 230	2e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	599
AciI	CCGC	4 cut(s)	159, 599, 621, 733
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	3 cut(s)	431, 546, 753
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	784
AfaI	GTAC	5 cut(s)	99, 482, 549, 716, 832
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	5 cut(s)	57, 154, 209, 526, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AluBI	AGCT	8 cut(s)	175, 256, 263, 290, 368, 577, 698, 863
AluI	AGCT	8 cut(s)	175, 256, 263, 290, 368, 577, 698, 863
Alw26I	GTCTC	2 cut(s)	794, 876
AlwI	GGATC	3 cut(s)	431, 546, 753
AoxI	GGCC	4 cut(s)	87, 609, 642, 730
Asp700I	GAANNNNTTC	2 cut(s)	149, 755
AspS9I	GGNCC	3 cut(s)	609, 642, 813
AsuC2I	CCSGG	1 cut(s)	851
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	813
BaeI	ACNNNNGTAYC	2 cut(s)	814, 847
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	638
BccI	CCATC	2 cut(s)	680, 824
BcnI	CCSGG	1 cut(s)	851
BcoDI	GTCTC	2 cut(s)	794, 876
BfaI	CTAG	2 cut(s)	542, 843
BisI	GCNGC	1 cut(s)	733
BlsI	GCNGC	1 cut(s)	734
BmcAI	AGTACT	1 cut(s)	716
Bme1390I	CCNGG	1 cut(s)	851
Bme18I	GGWCC	1 cut(s)	813
BmgT120I	GGNCC	3 cut(s)	609, 642, 813
BmiI	GGNNCC	2 cut(s)	163, 848
BmrFI	CCNGG	1 cut(s)	851
BmsI	GCATC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	20, 343
BsaWI	WCCGGW	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	199
Bse8I	GATNNNNATC	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	20, 343
BseGI	GGATG	1 cut(s)	607
BseJI	GATNNNNATC	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	599
Bsh1285I	CGRYCG	1 cut(s)	838
BshFI	GGCC	4 cut(s)	89, 611, 644, 732
BsiEI	CGRYCG	1 cut(s)	838
BsiSI	CCGG	3 cut(s)	276, 838, 851
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	794, 876
BsmBI	CGTCTC	2 cut(s)	794, 876
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	4 cut(s)	89, 611, 644, 732
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	4 cut(s)	436, 486, 538, 745
Bsp19I	CCATGG	1 cut(s)	20
BspACI	CCGC	4 cut(s)	159, 599, 621, 733
BspANI	GGCC	4 cut(s)	89, 611, 644, 732
BspFNI	CGCG	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	163, 848
BspPI	GGATC	3 cut(s)	431, 546, 753
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	20, 343
BssMI	GATC	4 cut(s)	436, 486, 538, 745
BssNI	GRCGYC	1 cut(s)	784
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	20, 343
Bst2BI	CACGAG	1 cut(s)	613
Bst4CI	ACNGT	4 cut(s)	7, 150, 719, 830
BstACI	GRCGYC	1 cut(s)	784
BstC8I	GCNNGC	1 cut(s)	861
BstDEI	CTNAG	2 cut(s)	444, 534
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	1 cut(s)	599
BstKTI	GATC	4 cut(s)	439, 489, 541, 748
BstMAI	GTCTC	2 cut(s)	794, 876
BstMBI	GATC	4 cut(s)	436, 486, 538, 745
BstMCI	CGRYCG	1 cut(s)	838
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 253
BstNSI	RCATGY	2 cut(s)	481, 739
BstSCI	CCNGG	1 cut(s)	849
BstUI	CGCG	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	4 cut(s)	89, 611, 644, 732
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	861
Cfr13I	GGNCC	3 cut(s)	609, 642, 813
CseI	GACGC	2 cut(s)	773, 779
Csp6I	GTAC	5 cut(s)	98, 481, 548, 715, 831
CviAII	CATG	5 cut(s)	21, 31, 320, 478, 736
CviQI	GTAC	5 cut(s)	98, 481, 548, 715, 831
DdeI	CTNAG	2 cut(s)	444, 534
DpnI	GATC	4 cut(s)	438, 488, 540, 747
DpnII	GATC	4 cut(s)	436, 486, 538, 745
Eco130I	CCWWGG	2 cut(s)	20, 343
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	813
Eco57I	CTGAAG	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	20, 343
EcoT38I	GRGCYC	1 cut(s)	28
ErhI	CCWWGG	2 cut(s)	20, 343
Esp3I	CGTCTC	2 cut(s)	794, 876
FaeI	CATG	5 cut(s)	24, 34, 323, 481, 739
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	5 cut(s)	20, 30, 319, 477, 735
Fnu4HI	GCNGC	1 cut(s)	733
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	733
FspBI	CTAG	2 cut(s)	542, 843
GluI	GCNGC	1 cut(s)	733
HaeIII	GGCC	4 cut(s)	89, 611, 644, 732
HapII	CCGG	3 cut(s)	276, 838, 851
HgaI	GACGC	2 cut(s)	773, 779
Hin1I	GRCGYC	1 cut(s)	784
Hin1II	CATG	5 cut(s)	24, 34, 323, 481, 739
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	3 cut(s)	254, 575, 696
HinfI	GANTC	2 cut(s)	420, 675
HpaII	CCGG	3 cut(s)	276, 838, 851
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	502, 813
Hpy188I	TCNGA	3 cut(s)	166, 518, 750
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	2 cut(s)	502, 813
Hpy99I	CGWCG	1 cut(s)	789
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	4 cut(s)	7, 150, 719, 830
HpyCH4IV	ACGT	3 cut(s)	117, 521, 550
HpyCH4V	TGCA	3 cut(s)	247, 650, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 253
HpyF3I	CTNAG	2 cut(s)	444, 534
HpySE526I	ACGT	3 cut(s)	117, 521, 550
Hsp92I	GRCGYC	1 cut(s)	784
Hsp92II	CATG	5 cut(s)	24, 34, 323, 481, 739
Kzo9I	GATC	4 cut(s)	436, 486, 538, 745
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	2 cut(s)	542, 843
MaeII	ACGT	3 cut(s)	117, 521, 550
MaeIII	GTNAC	4 cut(s)	110, 266, 283, 761
MalI	GATC	4 cut(s)	438, 488, 540, 747
MboI	GATC	4 cut(s)	436, 486, 538, 745
MboII	GAAGA	3 cut(s)	3, 45, 643
MfeI	CAATTG	1 cut(s)	637
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	1 cut(s)	637
MnlI	CCTC	4 cut(s)	87, 191, 389, 611
MroXI	GAANNNNTTC	2 cut(s)	149, 755
MslI	CAYNNNNRTG	2 cut(s)	19, 684
MspA1I	CMGCKG	2 cut(s)	263, 863
MspI	CCGG	3 cut(s)	276, 838, 851
MspR9I	CCNGG	1 cut(s)	851
MunI	CAATTG	1 cut(s)	637
Mva1269I	GAATGC	1 cut(s)	535
MvnI	CGCG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	32, 253
NciI	CCSGG	1 cut(s)	851
NcoI	CCATGG	1 cut(s)	20
NdeII	GATC	4 cut(s)	436, 486, 538, 745
NlaIII	CATG	5 cut(s)	24, 34, 323, 481, 739
NlaIV	GGNNCC	2 cut(s)	163, 848
NmuCI	GTSAC	3 cut(s)	266, 283, 761
NspI	RCATGY	2 cut(s)	481, 739
PciI	ACATGT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	2 cut(s)	149, 755
PfeI	GAWTC	2 cut(s)	420, 675
PkrI	GCNGC	1 cut(s)	734
PscI	ACATGT	1 cut(s)	477
Psp1406I	AACGTT	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	163, 848
PspPI	GGNCC	3 cut(s)	609, 642, 813
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	2 cut(s)	263, 863
RsaI	GTAC	5 cut(s)	99, 482, 549, 716, 832
RsaNI	GTAC	5 cut(s)	98, 481, 548, 715, 831
RseI	CAYNNNNRTG	2 cut(s)	19, 684
SatI	GCNGC	1 cut(s)	733
Sau3AI	GATC	4 cut(s)	436, 486, 538, 745
Sau96I	GGNCC	3 cut(s)	609, 642, 813
ScaI	AGTACT	1 cut(s)	716
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	28
SfaNI	GCATC	1 cut(s)	671
SinI	GGWCC	1 cut(s)	813
SmiMI	CAYNNNNRTG	2 cut(s)	19, 684
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	1 cut(s)	637
SsiI	CCGC	4 cut(s)	159, 599, 621, 733
SspMI	CTAG	2 cut(s)	542, 843
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	2 cut(s)	20, 343
TaaI	ACNGT	4 cut(s)	7, 150, 719, 830
TaiI	ACGT	3 cut(s)	120, 524, 553
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	637
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	2 cut(s)	420, 675
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	3 cut(s)	266, 283, 761
Tsp45I	GTSAC	3 cut(s)	266, 283, 761
TspDTI	ATGAA	2 cut(s)	587, 821
TspGWI	ACGGA	1 cut(s)	749
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	813
XceI	RCATGY	2 cut(s)	481, 739
XmnI	GAANNNNTTC	2 cut(s)	149, 755
XspI	CTAG	2 cut(s)	542, 843
ZrmI	AGTACT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.