Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Reverse (-)

25022424 .. 25024684

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGTCTTCCCAGCAATGGACTCTGCTATTGAGCTTAGTGCTTATGGTCTCTGTAACAATGGCAGCTCCCCCAAAAAGGCCTGTGTTTGTACCATTTGGAAGAAACTACATGCCCACCTGGGCTTTTGACCACATCAAGTACTTCAATGGTGGCAATGAGATTCAGCTCCACCTTGACAAATACACAGGTACTGGTTTCCAATCCAAAGGTTCATACTTGTTTGGTCATTTCCATATGCAAATCAAATTGCCCCCTGGTGACTCTGCTGGAACTGTTACTGCTTTCTATCTGTCTTCTACAAACGCAGAGCACGATGAGATCGACTTCGAGTTCTTGGGGAACAGAACAGGGCAGCCCTTCATTTTGCAGACCAATGTCTTCACCGGAGGCAAAGGTGACCGTGAACAGAGGATCTTCCTTTGGTTCGACCCAACCAAAGAGTACCACTCCTACTCTGTCCTCTGGAATCTCTACCAGATTGTATTCTTCGTGGATGACATCCCAATCCGAGTGTTCAAGAACAGCAAAGACTTGGGAGTGAAATTCCCATTCAACCAACCCATGAAGCTCTACTCTAGTCTGTGGAACGCCGACGATTGGGCCACCAGGGGAGGACTCGAGAAAACCGACTGGTCCAAGGCTCCCTTCATTGCCACCTACAGAGGCTTCCACATCGACGGCTGCGAGGCCTCAGTACAAGCCAGGTTCTGTGCCACACAGGGTAAGAGGTGGTGGGATCAGAAGGAGTTCCAGGACCTTGATGCTTATCAATGGAGGAGGCTTAGGTGGGTTAGACAGAAGTTCACCATCTACAACTACTGCACTGACAGGACTAGGTATCCTACTCTCCCTGCAGAGTGCAAGAGAGACAGAGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

295

Amino Acids

34.43

Weight (kDa)

8.89

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 214	8.3e-65	Glycosyl hydrolases family 16
XET_C	PF06955	241 - 288	8.1e-18	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	422, 747
AcsI	RAATTY	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	93, 143, 193, 446, 699
AfiI	CCNNNNNNNGG	3 cut(s)	18, 78, 600
AgsI	TTSAA	3 cut(s)	148, 520, 556
AjnI	CCWGG	5 cut(s)	119, 256, 608, 704, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	4 cut(s)	36, 68, 169, 571
AluI	AGCT	4 cut(s)	36, 68, 169, 571
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	3 cut(s)	55, 864, 870
AlwI	GGATC	2 cut(s)	422, 747
AlwNI	CAGNNNCTG	2 cut(s)	194, 711
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	3 cut(s)	80, 603, 690
ApeKI	GCWGC	3 cut(s)	65, 355, 684
ApoI	RAATTY	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	749
AspS9I	GGNCC	3 cut(s)	603, 636, 757
AsuHPI	GGTGA	4 cut(s)	272, 376, 410, 799
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	636, 757
BbsI	GAAGAC	2 cut(s)	288, 373
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	77, 367, 671
BccI	CCATC	1 cut(s)	818
BceAI	ACGGC	1 cut(s)	697
BciT130I	CCWGG	5 cut(s)	121, 258, 610, 706, 755
BciVI	GTATCC	1 cut(s)	852
BcoDI	GTCTC	3 cut(s)	55, 864, 870
BfaI	CTAG	2 cut(s)	579, 837
BfmI	CTRYAG	2 cut(s)	661, 855
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	3 cut(s)	66, 356, 685
BlsI	GCNGC	3 cut(s)	67, 357, 686
BmcAI	AGTACT	1 cut(s)	143
Bme1390I	CCNGG	5 cut(s)	121, 258, 610, 706, 755
Bme18I	GGWCC	2 cut(s)	636, 757
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	3 cut(s)	603, 636, 757
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	5 cut(s)	121, 258, 610, 706, 755
BmsI	GCATC	1 cut(s)	754
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	288, 373
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
Bpu10I	CCTNAGC	1 cut(s)	785
BsaBI	GATNNNNATC	1 cut(s)	768
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	4 cut(s)	120, 256, 609, 639
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 78, 600
Bse1I	ACTGG	2 cut(s)	199, 638
Bse3DI	GCAATG	3 cut(s)	23, 163, 651
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	5 cut(s)	121, 258, 610, 706, 755
BseDI	CCNNGG	4 cut(s)	120, 256, 609, 639
BseGI	GGATG	2 cut(s)	501, 502
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	3 cut(s)	18, 78, 600
BseMI	GCAATG	3 cut(s)	23, 163, 651
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	2 cut(s)	199, 638
BseRI	GAGGAG	1 cut(s)	793
BseXI	GCAGC	3 cut(s)	77, 367, 671
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	808
BshFI	GGCC	3 cut(s)	82, 605, 692
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	18, 78, 600
BsmAI	GTCTC	3 cut(s)	55, 864, 870
BsnI	GGCC	3 cut(s)	82, 605, 692
Bso31I	GGTCTC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	321, 414, 739
BspANI	GGCC	3 cut(s)	82, 605, 692
BspCNI	CTCAG	1 cut(s)	707
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	859
BspPI	GGATC	2 cut(s)	422, 747
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	3 cut(s)	23, 163, 651
BsrI	ACTGG	2 cut(s)	199, 638
BssECI	CCNNGG	4 cut(s)	120, 256, 609, 639
BssMI	GATC	3 cut(s)	321, 414, 739
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	5 cut(s)	121, 258, 610, 706, 755
Bst4CI	ACNGT	2 cut(s)	277, 404
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	3 cut(s)	37, 694, 785
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	501, 502
BstKTI	GATC	3 cut(s)	324, 417, 742
BstMAI	GTCTC	3 cut(s)	55, 864, 870
BstMBI	GATC	3 cut(s)	321, 414, 739
BstNI	CCWGG	5 cut(s)	121, 258, 610, 706, 755
BstNSI	RCATGY	1 cut(s)	115
BstPAI	GACNNNNGTC	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	5 cut(s)	119, 256, 608, 704, 753
BstSFI	CTRYAG	2 cut(s)	661, 855
BstV1I	GCAGC	3 cut(s)	77, 367, 671
BstV2I	GAAGAC	2 cut(s)	288, 373
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	82, 605, 692
BtsCI	GGATG	2 cut(s)	501, 502
BtsIMutI	CAGTG	1 cut(s)	825
CaiI	CAGNNNCTG	2 cut(s)	194, 711
Cfr13I	GGNCC	3 cut(s)	603, 636, 757
Csp6I	GTAC	5 cut(s)	92, 142, 192, 445, 698
CviAII	CATG	2 cut(s)	112, 565
CviQI	GTAC	5 cut(s)	92, 142, 192, 445, 698
DdeI	CTNAG	3 cut(s)	37, 694, 785
DpnI	GATC	3 cut(s)	323, 416, 741
DpnII	GATC	3 cut(s)	321, 414, 739
Eco130I	CCWWGG	1 cut(s)	639
Eco147I	AGGCCT	2 cut(s)	82, 692
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	636, 757
Eco88I	CYCGRG	1 cut(s)	620
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	757
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	5 cut(s)	119, 256, 608, 704, 753
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	2 cut(s)	115, 568
FaiI	YATR	8 cut(s)	47, 113, 217, 237, 239, 566, 881, 883
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FatI	CATG	2 cut(s)	111, 564
FauNDI	CATATG	2 cut(s)	237, 881
Fnu4HI	GCNGC	3 cut(s)	66, 356, 685
FokI	GGATG	2 cut(s)	488, 509
Fsp4HI	GCNGC	3 cut(s)	66, 356, 685
FspBI	CTAG	2 cut(s)	579, 837
GluI	GCNGC	3 cut(s)	66, 356, 685
GsaI	CCCAGC	1 cut(s)	16
HaeIII	GGCC	3 cut(s)	82, 605, 692
HapII	CCGG	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	115, 568
HinfI	GANTC	5 cut(s)	22, 163, 263, 469, 618
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	4 cut(s)	272, 376, 410, 799
Hpy166II	GTNNAC	2 cut(s)	407, 807
Hpy188I	TCNGA	2 cut(s)	512, 744
Hpy188III	TCNNGA	3 cut(s)	466, 520, 622
Hpy8I	GTNNAC	2 cut(s)	407, 807
Hpy99I	CGWCG	2 cut(s)	599, 683
HpyAV	CCTTC	3 cut(s)	370, 658, 739
HpyCH4III	ACNGT	2 cut(s)	277, 404
HpyCH4V	TGCA	5 cut(s)	241, 370, 825, 857, 864
HpyF3I	CTNAG	3 cut(s)	37, 694, 785
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	115, 568
Kzo9I	GATC	3 cut(s)	321, 414, 739
LmnI	GCTCC	3 cut(s)	73, 174, 649
Lsp1109I	GCAGC	3 cut(s)	77, 367, 671
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	2 cut(s)	579, 837
MaeIII	GTNAC	4 cut(s)	55, 260, 277, 398
MalI	GATC	3 cut(s)	323, 416, 741
MboI	GATC	3 cut(s)	321, 414, 739
MboII	GAAGA	5 cut(s)	114, 288, 373, 409, 481
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	248, 545
MlyI	GAGTC	3 cut(s)	16, 257, 612
MroXI	GAANNNNTTC	1 cut(s)	749
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	5 cut(s)	121, 258, 610, 706, 755
MvaI	CCWGG	5 cut(s)	121, 258, 610, 706, 755
NdeI	CATATG	2 cut(s)	237, 881
NdeII	GATC	3 cut(s)	321, 414, 739
NlaIII	CATG	2 cut(s)	115, 568
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	2 cut(s)	260, 398
NspI	RCATGY	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	620
PceI	AGGCCT	2 cut(s)	82, 692
PcsI	WCGNNNNNNNCGW	4 cut(s)	312, 321, 627, 684
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	163, 469
PfoI	TCCNGGA	1 cut(s)	753
PkrI	GCNGC	3 cut(s)	67, 357, 686
PleI	GAGTC	3 cut(s)	16, 257, 612
PpsI	GAGTC	3 cut(s)	16, 257, 612
PpuMI	RGGWCCY	1 cut(s)	757
PshAI	GACNNNNGTC	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	5 cut(s)	119, 256, 608, 704, 753
PspEI	GGTNACC	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	5 cut(s)	119, 256, 608, 704, 753
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	3 cut(s)	603, 636, 757
PspPPI	RGGWCCY	1 cut(s)	757
PstI	CTGCAG	1 cut(s)	859
PstNI	CAGNNNCTG	2 cut(s)	194, 711
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	5 cut(s)	93, 143, 193, 446, 699
RsaNI	GTAC	5 cut(s)	92, 142, 192, 445, 698
SatI	GCNGC	3 cut(s)	66, 356, 685
Sau3AI	GATC	3 cut(s)	321, 414, 739
Sau96I	GGNCC	3 cut(s)	603, 636, 757
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	3 cut(s)	16, 257, 612
ScrFI	CCNGG	5 cut(s)	121, 258, 610, 706, 755
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	2 cut(s)	661, 855
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	2 cut(s)	636, 757
SlaI	CTCGAG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	2 cut(s)	248, 545
SseBI	AGGCCT	2 cut(s)	82, 692
SspMI	CTAG	2 cut(s)	579, 837
StuI	AGGCCT	2 cut(s)	82, 692
StyD4I	CCNGG	5 cut(s)	119, 256, 608, 704, 753
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	277, 404
TaqI	TCGA	5 cut(s)	324, 330, 429, 621, 678
TasI	AATT	2 cut(s)	248, 545
TatI	WGTACW	2 cut(s)	141, 697
TfiI	GAWTC	2 cut(s)	163, 469
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	2 cut(s)	260, 398
TseI	GCWGC	3 cut(s)	65, 355, 684
Tsp45I	GTSAC	2 cut(s)	260, 398
TspDTI	ATGAA	4 cut(s)	204, 352, 581, 640
TspRI	CASTG	1 cut(s)	832
VpaK11BI	GGWCC	2 cut(s)	636, 757
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	2 cut(s)	579, 837
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.