Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Reverse (-)

46027584 .. 46030362

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG287300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCAAATCAAACTGGTCCCTGGTGACTCTGCTGGAACTGTTACTGCTTTCTATCTGTCTTCTACAAACTCAGAGCACGATGAGATCGACTTCGAGTTCTTGGGGAACAGAACAGGGCAGCCTTACATTTTGCAGACCAATGTCTTCACCGGAGGAAAGGGTGACCGAGAACAGAGGATCTTCCTCTGGTTCGACCCAACTAAAGAGTACCACTCCTACTCTGTGCTCTGGAATCTCTACCAGATTGTATTCTTAGTGGATGACATCCCAATCCGAGTGTTCAAGAACAGCAAAGACTTGGGAGTGAAATTCCCATTCAACCAACCCATGAAGCTCTACTCTAGTCTGTGGAACGCAGACGATTGGGCCACCAGGGGAGGACTCGAGAAGACTGACTGGTCTAAGGCTCCCTTCGTGGCCACCTATAGGGGCTTCCATATCGACGGCTGCGAGGCGTCGGTGGAAGCCAAGTACTGTGCCACTCAGGGTAAGAGGTGGTGGGATCAGAAGGAGTTCCAGGACCTCGATGCTTATCAATGGAGGAGGCTGAGGTGGGTTAGACAGAGGTTCACCATCTACAACTACTGCACTGACAGGACTAGGTACCCTAGTCTCCCTGCGGAGTGCAAGAGAGACAGAGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

215

Amino Acids

25.43

Weight (kDa)

7.63

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	1 - 135	1.6e-51	Glycosyl hydrolases family 16
XET_C	PF06955	162 - 209	1.5e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	1 cut(s)	620
AclWI	GGATC	2 cut(s)	185, 510
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	3 cut(s)	209, 473, 605
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgsI	TTSAA	2 cut(s)	283, 319
AjnI	CCWGG	3 cut(s)	19, 371, 516
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw21I	GWGCWC	2 cut(s)	78, 228
Alw26I	GTCTC	3 cut(s)	617, 627, 633
AlwI	GGATC	2 cut(s)	185, 510
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	366, 417
ApeKI	GCWGC	2 cut(s)	118, 447
ApoI	RAATTY	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	603
AspS9I	GGNCC	3 cut(s)	16, 366, 520
AsuHPI	GGTGA	4 cut(s)	35, 139, 173, 562
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	16, 520
BaeI	ACNNNNGTAYC	2 cut(s)	595, 628
BalI	TGGCCA	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	603
BbsI	GAAGAC	3 cut(s)	51, 136, 395
Bbv12I	GWGCWC	2 cut(s)	78, 228
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	130, 434
BccI	CCATC	1 cut(s)	581
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	3 cut(s)	21, 373, 518
BcoDI	GTCTC	3 cut(s)	617, 627, 633
BfaI	CTAG	3 cut(s)	342, 600, 609
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	119, 448
BlsI	GCNGC	2 cut(s)	120, 449
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	3 cut(s)	21, 373, 518
Bme18I	GGWCC	2 cut(s)	16, 520
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	3 cut(s)	16, 366, 520
BmiI	GGNNCC	3 cut(s)	18, 408, 605
BmrFI	CCNGG	3 cut(s)	21, 373, 518
BmsI	GCATC	1 cut(s)	517
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	3 cut(s)	51, 136, 395
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu10I	CCTNAGC	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	19, 372
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse1I	ACTGG	2 cut(s)	18, 401
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	3 cut(s)	21, 373, 518
BseDI	CCNNGG	2 cut(s)	19, 372
BseGI	GGATG	2 cut(s)	264, 265
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	84, 497, 539
BseNI	ACTGG	2 cut(s)	18, 401
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	2 cut(s)	130, 434
BsgI	GTGCAG	1 cut(s)	571
BshFI	GGCC	2 cut(s)	368, 419
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	2 cut(s)	78, 228
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmAI	GTCTC	3 cut(s)	617, 627, 633
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	368, 419
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	2 cut(s)	78, 228
Bsp143I	GATC	3 cut(s)	84, 177, 502
BspACI	CCGC	1 cut(s)	620
BspANI	GGCC	2 cut(s)	368, 419
BspCNI	CTCAG	3 cut(s)	83, 496, 540
BspLI	GGNNCC	3 cut(s)	18, 408, 605
BspPI	GGATC	2 cut(s)	185, 510
BspT107I	GGYRCC	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	18, 401
BssECI	CCNNGG	2 cut(s)	19, 372
BssMI	GATC	3 cut(s)	84, 177, 502
BssNI	GRCGYC	1 cut(s)	455
Bst2UI	CCWGG	3 cut(s)	21, 373, 518
Bst4CI	ACNGT	2 cut(s)	40, 476
BstACI	GRCGYC	1 cut(s)	455
BstDEI	CTNAG	5 cut(s)	70, 253, 402, 483, 548
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	264, 265
BstKTI	GATC	3 cut(s)	87, 180, 505
BstMAI	GTCTC	3 cut(s)	617, 627, 633
BstMBI	GATC	3 cut(s)	84, 177, 502
BstNI	CCWGG	3 cut(s)	21, 373, 518
BstPAI	GACNNNNGTC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	19, 371, 516
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	130, 434
BstV2I	GAAGAC	3 cut(s)	51, 136, 395
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	368, 419
BtsCI	GGATG	2 cut(s)	264, 265
BtsIMutI	CAGTG	1 cut(s)	588
Cfr13I	GGNCC	3 cut(s)	16, 366, 520
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	208, 472, 604
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	9 cut(s)	121, 334, 368, 407, 419, 432, 447, 467, 547
CviKI_1	RGCY	9 cut(s)	121, 334, 368, 407, 419, 432, 447, 467, 547
CviQI	GTAC	3 cut(s)	208, 472, 604
DdeI	CTNAG	5 cut(s)	70, 253, 402, 483, 548
DpnI	GATC	3 cut(s)	86, 179, 504
DpnII	GATC	3 cut(s)	84, 177, 502
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	16, 520
Eco88I	CYCGRG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	3 cut(s)	19, 371, 516
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	329, 426, 438, 644, 646
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	644
Fnu4HI	GCNGC	2 cut(s)	119, 448
FokI	GGATG	2 cut(s)	251, 272
Fsp4HI	GCNGC	2 cut(s)	119, 448
FspBI	CTAG	3 cut(s)	342, 600, 609
GluI	GCNGC	2 cut(s)	119, 448
HaeIII	GGCC	2 cut(s)	368, 419
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	3 cut(s)	26, 232, 381
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	4 cut(s)	35, 139, 173, 562
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188I	TCNGA	3 cut(s)	73, 275, 507
Hpy188III	TCNNGA	3 cut(s)	229, 283, 385
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	2 cut(s)	446, 460
HpyAV	CCTTC	2 cut(s)	421, 502
HpyCH4III	ACNGT	2 cut(s)	40, 476
HpyCH4V	TGCA	4 cut(s)	4, 133, 588, 627
HpyF3I	CTNAG	5 cut(s)	70, 253, 402, 483, 548
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	1 cut(s)	331
KpnI	GGTACC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	84, 177, 502
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	2 cut(s)	130, 434
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	3 cut(s)	342, 600, 609
MaeIII	GTNAC	3 cut(s)	23, 40, 161
MalI	GATC	3 cut(s)	86, 179, 504
MboI	GATC	3 cut(s)	84, 177, 502
MboII	GAAGA	4 cut(s)	51, 136, 172, 400
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	78, 228
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	1 cut(s)	308
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	2 cut(s)	20, 375
Mox20I	TGGCCA	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	419
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	21, 373, 518
MvaI	CCWGG	3 cut(s)	21, 373, 518
NdeI	CATATG	1 cut(s)	644
NdeII	GATC	3 cut(s)	84, 177, 502
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	3 cut(s)	18, 408, 605
NmuCI	GTSAC	2 cut(s)	23, 161
PaeR7I	CTCGAG	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 447
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	232
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	2 cut(s)	120, 449
PleI	GAGTC	2 cut(s)	20, 375
PpsI	GAGTC	2 cut(s)	20, 375
PpuMI	RGGWCCY	1 cut(s)	520
PshAI	GACNNNNGTC	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	19, 371, 516
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	3 cut(s)	19, 371, 516
PspN4I	GGNNCC	3 cut(s)	18, 408, 605
PspPI	GGNCC	3 cut(s)	16, 366, 520
PspPPI	RGGWCCY	1 cut(s)	520
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	209, 473, 605
RsaNI	GTAC	3 cut(s)	208, 472, 604
SatI	GCNGC	2 cut(s)	119, 448
Sau3AI	GATC	3 cut(s)	84, 177, 502
Sau96I	GGNCC	3 cut(s)	16, 366, 520
ScaI	AGTACT	1 cut(s)	473
SchI	GAGTC	2 cut(s)	20, 375
ScrFI	CCNGG	3 cut(s)	21, 373, 518
SduI	GDGCHC	2 cut(s)	78, 228
SetI	ASST	7 cut(s)	336, 425, 497, 525, 554, 569, 605
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	424
Sfr274I	CTCGAG	1 cut(s)	383
SinI	GGWCC	2 cut(s)	16, 520
SlaI	CTCGAG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	1 cut(s)	620
SspMI	CTAG	3 cut(s)	342, 600, 609
StyD4I	CCNGG	3 cut(s)	19, 371, 516
TaaI	ACNGT	2 cut(s)	40, 476
TaqI	TCGA	6 cut(s)	87, 93, 192, 384, 441, 525
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	308
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	232
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	2 cut(s)	23, 161
TseI	GCWGC	2 cut(s)	118, 447
Tsp45I	GTSAC	2 cut(s)	23, 161
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	16, 520
XapI	RAATTY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	3 cut(s)	342, 600, 609
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.