Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Reverse (-)

53375266 .. 53377260

Gene Structure 1995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39726

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTGGATGAAATTAGACCCTATTAAAGGACCTCCCCTCCTTCCCATTTCCTCATCACAACTCAAACCACTCTCTCACTCTCTCTGTGTTGCACAGACAAAAATGGCTTCTTACAAGCAATGGACTCTGCTCTTGAGCTTAGTGCTTATGGTCTCTGCAACAATGGCAGCTCCCCCAAGGAGGCCTGTGGCTGTACCCTTTGGAAGAAACTACCAGCCCACCTGGGCTTTTGACCACATCAAGTACTACAATGGTGGCAATGAGATTCAGCTCCACCTTGACAAATACACAGGTACGGGTTTCCAATCCAAAGGTTCATACTTGTTTGGCCATTTCCATATGCAAATCAAACTGGTCCCTGGTGACTCTGCTGGAACTGTTACTGCTTTCTATCTGTCTTCTACAAACTCAGAGCACGATGAGATCGACTTCGAGTTCTTGGGGAACAGAACAGGGCAGCCCTACATTTTGCAGACTAATGTCTTCACCGGAGGAAAGGGTGACCGAGAACAGAGGATCTTCCTCTGGTTCGACCCAACCAAAGAGTACCACTCCTACTCTGTGCTCTGGAATCTCTACCAGATTGTATTCTTAGTGGATGACATCCCAATCCGAGTCTTCAAGAACAGCAAAGACTTGGGAGTGAAATTCCCATTCAACCAACCCATGAAGCTCTACTCTAGTCTGTGGAACGCAGACGATTGGGCCACCAGGGGAGGACTCGAGAAGACTGACTGGTCTAAGGCTCCCTTCGTGGCCACCTATAGGGGCTTCCATATCGACGGCTGCGAGGCGTCGGTGGAAGCCAAGTACTGTGCCACTCAGGGTAAGAGGTGGTGGGATCAGAAGGAGTTCCAGGACCTCGATGCTTATCAATGGAGGAGGCTGAGGTGGGTTAGACAGAGGTTCACCATCTACAACTACTGCACTGACAGGACTAGGTACCCTAGTCTCCCTGCCGAGTGCAAGAGAGACAGAGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

328

Amino Acids

38.16

Weight (kDa)

9.09

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	68 - 248	6.7e-65	Glycosyl hydrolases family 16
XET_C	PF06955	275 - 322	2.9e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	736
Acc65I	GGTACC	1 cut(s)	942
AccB1I	GGYRCC	1 cut(s)	942
AclWI	GGATC	2 cut(s)	524, 849
AcoI	YGGCCR	2 cut(s)	328, 756
AcsI	RAATTY	1 cut(s)	647
AcyI	GRCGYC	1 cut(s)	794
AfaI	GTAC	6 cut(s)	195, 245, 295, 548, 812, 944
AfiI	CCNNNNNNNGG	3 cut(s)	26, 180, 765
AgsI	TTSAA	2 cut(s)	622, 658
AjnI	CCWGG	4 cut(s)	221, 358, 710, 855
AluBI	AGCT	4 cut(s)	138, 170, 271, 673
AluI	AGCT	4 cut(s)	138, 170, 271, 673
Alw21I	GWGCWC	2 cut(s)	417, 567
Alw26I	GTCTC	4 cut(s)	157, 956, 966, 972
AlwI	GGATC	2 cut(s)	524, 849
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	4 cut(s)	182, 328, 705, 756
ApeKI	GCWGC	3 cut(s)	167, 457, 786
ApoI	RAATTY	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	851
Asp718I	GGTACC	1 cut(s)	942
AspS9I	GGNCC	4 cut(s)	29, 355, 705, 859
AsuHPI	GGTGA	4 cut(s)	374, 478, 512, 901
AvaI	CYCGRG	1 cut(s)	722
AvaII	GGWCC	3 cut(s)	29, 355, 859
BaeI	ACNNNNGTAYC	2 cut(s)	934, 967
BalI	TGGCCA	2 cut(s)	330, 758
BanI	GGYRCC	1 cut(s)	942
BbsI	GAAGAC	4 cut(s)	390, 475, 610, 734
Bbv12I	GWGCWC	2 cut(s)	417, 567
BbvCI	CCTCAGC	1 cut(s)	887
BbvI	GCAGC	3 cut(s)	179, 469, 773
BccI	CCATC	1 cut(s)	920
BceAI	ACGGC	1 cut(s)	799
BciT130I	CCWGG	4 cut(s)	223, 360, 712, 857
BcoDI	GTCTC	4 cut(s)	157, 956, 966, 972
BfaI	CTAG	3 cut(s)	681, 939, 948
BfmI	CTRYAG	1 cut(s)	763
BisI	GCNGC	3 cut(s)	168, 458, 787
BlsI	GCNGC	3 cut(s)	169, 459, 788
BmcAI	AGTACT	2 cut(s)	245, 812
Bme1390I	CCNGG	4 cut(s)	223, 360, 712, 857
Bme18I	GGWCC	3 cut(s)	29, 355, 859
BmeT110I	CYCGRG	1 cut(s)	722
BmgT120I	GGNCC	4 cut(s)	29, 355, 705, 859
BmiI	GGNNCC	3 cut(s)	357, 747, 944
BmrFI	CCNGG	4 cut(s)	223, 360, 712, 857
BmsI	GCATC	1 cut(s)	856
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	4 cut(s)	390, 475, 610, 734
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
Bpu10I	CCTNAGC	1 cut(s)	887
BpuEI	CTTGAG	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	794
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	4 cut(s)	176, 222, 358, 711
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 180, 765
Bse1I	ACTGG	2 cut(s)	357, 740
Bse3DI	GCAATG	2 cut(s)	125, 265
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	4 cut(s)	223, 360, 712, 857
BseDI	CCNNGG	4 cut(s)	176, 222, 358, 711
BseGI	GGATG	3 cut(s)	12, 603, 604
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	3 cut(s)	26, 180, 765
BseMI	GCAATG	2 cut(s)	125, 265
BseMII	CTCAG	3 cut(s)	423, 836, 878
BseNI	ACTGG	2 cut(s)	357, 740
BseRI	GAGGAG	1 cut(s)	895
BseXI	GCAGC	3 cut(s)	179, 469, 773
BsgI	GTGCAG	1 cut(s)	910
BshFI	GGCC	4 cut(s)	184, 330, 707, 758
BshNI	GGYRCC	1 cut(s)	942
BsiHKAI	GWGCWC	2 cut(s)	417, 567
BsiHKCI	CYCGRG	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	3 cut(s)	26, 180, 765
BsmAI	GTCTC	4 cut(s)	157, 956, 966, 972
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	4 cut(s)	184, 330, 707, 758
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	2 cut(s)	417, 567
Bsp143I	GATC	3 cut(s)	423, 516, 841
BspANI	GGCC	4 cut(s)	184, 330, 707, 758
BspCNI	CTCAG	3 cut(s)	422, 835, 879
BspLI	GGNNCC	3 cut(s)	357, 747, 944
BspPI	GGATC	2 cut(s)	524, 849
BspT107I	GGYRCC	1 cut(s)	942
BspTNI	GGTCTC	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	125, 265
BsrI	ACTGG	2 cut(s)	357, 740
BssECI	CCNNGG	4 cut(s)	176, 222, 358, 711
BssMI	GATC	3 cut(s)	423, 516, 841
BssNI	GRCGYC	1 cut(s)	794
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	4 cut(s)	223, 360, 712, 857
Bst4CI	ACNGT	2 cut(s)	379, 815
BstACI	GRCGYC	1 cut(s)	794
BstDEI	CTNAG	6 cut(s)	139, 409, 592, 741, 822, 887
BstEII	GGTNACC	1 cut(s)	500
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	12, 603, 604
BstKTI	GATC	3 cut(s)	426, 519, 844
BstMAI	GTCTC	4 cut(s)	157, 956, 966, 972
BstMBI	GATC	3 cut(s)	423, 516, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	4 cut(s)	223, 360, 712, 857
BstPAI	GACNNNNGTC	1 cut(s)	479
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	4 cut(s)	221, 358, 710, 855
BstSFI	CTRYAG	1 cut(s)	763
BstV1I	GCAGC	3 cut(s)	179, 469, 773
BstV2I	GAAGAC	4 cut(s)	390, 475, 610, 734
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	184, 330, 707, 758
BtsCI	GGATG	3 cut(s)	12, 603, 604
BtsIMutI	CAGTG	1 cut(s)	927
Cfr13I	GGNCC	4 cut(s)	29, 355, 705, 859
CseI	GACGC	1 cut(s)	783
Csp6I	GTAC	6 cut(s)	194, 244, 294, 547, 811, 943
CviAII	CATG	1 cut(s)	667
CviQI	GTAC	6 cut(s)	194, 244, 294, 547, 811, 943
DdeI	CTNAG	6 cut(s)	139, 409, 592, 741, 822, 887
DpnI	GATC	3 cut(s)	425, 518, 843
DpnII	GATC	3 cut(s)	423, 516, 841
DrdI	GACNNNNNNGTC	1 cut(s)	736
DseDI	GACNNNNNNGTC	1 cut(s)	736
EaeI	YGGCCR	2 cut(s)	328, 756
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	29, 355, 859
Eco88I	CYCGRG	1 cut(s)	722
Eco91I	GGTNACC	1 cut(s)	500
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	2 cut(s)	29, 859
EcoO65I	GGTNACC	1 cut(s)	500
EcoRII	CCWGG	4 cut(s)	221, 358, 710, 855
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	1 cut(s)	670
FaiI	YATR	9 cut(s)	149, 319, 339, 341, 668, 765, 777, 983, 985
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	1 cut(s)	666
FauNDI	CATATG	2 cut(s)	339, 983
Fnu4HI	GCNGC	3 cut(s)	168, 458, 787
FokI	GGATG	3 cut(s)	19, 590, 611
Fsp4HI	GCNGC	3 cut(s)	168, 458, 787
FspBI	CTAG	3 cut(s)	681, 939, 948
GluI	GCNGC	3 cut(s)	168, 458, 787
HaeIII	GGCC	4 cut(s)	184, 330, 707, 758
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	1 cut(s)	783
Hin1I	GRCGYC	1 cut(s)	794
Hin1II	CATG	1 cut(s)	670
HinfI	GANTC	6 cut(s)	124, 265, 365, 571, 615, 720
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	4 cut(s)	374, 478, 512, 901
Hpy166II	GTNNAC	1 cut(s)	909
Hpy188I	TCNGA	3 cut(s)	412, 614, 846
Hpy188III	TCNNGA	4 cut(s)	133, 568, 622, 724
Hpy8I	GTNNAC	1 cut(s)	909
Hpy99I	CGWCG	2 cut(s)	785, 799
HpyAV	CCTTC	3 cut(s)	50, 760, 841
HpyCH4III	ACNGT	2 cut(s)	379, 815
HpyCH4V	TGCA	6 cut(s)	92, 158, 343, 472, 927, 966
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	6 cut(s)	139, 409, 592, 741, 822, 887
Hsp92I	GRCGYC	1 cut(s)	794
Hsp92II	CATG	1 cut(s)	670
KpnI	GGTACC	1 cut(s)	946
Kzo9I	GATC	3 cut(s)	423, 516, 841
LmnI	GCTCC	3 cut(s)	175, 276, 751
Lsp1109I	GCAGC	3 cut(s)	179, 469, 773
LweI	GCATC	1 cut(s)	856
MaeI	CTAG	3 cut(s)	681, 939, 948
MaeIII	GTNAC	3 cut(s)	362, 379, 500
MalI	GATC	3 cut(s)	425, 518, 843
MboI	GATC	3 cut(s)	423, 516, 841
MboII	GAAGA	6 cut(s)	216, 390, 475, 511, 610, 739
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	417, 567
MlsI	TGGCCA	2 cut(s)	330, 758
MluCI	AATT	2 cut(s)	11, 647
MluNI	TGGCCA	2 cut(s)	330, 758
MlyI	GAGTC	4 cut(s)	118, 359, 624, 714
Mox20I	TGGCCA	2 cut(s)	330, 758
MroXI	GAANNNNTTC	1 cut(s)	851
MscI	TGGCCA	2 cut(s)	330, 758
MseI	TTAA	1 cut(s)	24
Msp20I	TGGCCA	2 cut(s)	330, 758
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	4 cut(s)	223, 360, 712, 857
MvaI	CCWGG	4 cut(s)	223, 360, 712, 857
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeI	CATATG	2 cut(s)	339, 983
NdeII	GATC	3 cut(s)	423, 516, 841
NlaIII	CATG	1 cut(s)	670
NlaIV	GGNNCC	3 cut(s)	357, 747, 944
NmeAIII	GCCGAG	1 cut(s)	985
NmuCI	GTSAC	2 cut(s)	362, 500
PaeR7I	CTCGAG	1 cut(s)	722
PceI	AGGCCT	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	2 cut(s)	423, 786
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	2 cut(s)	265, 571
PfoI	TCCNGGA	1 cut(s)	855
PkrI	GCNGC	3 cut(s)	169, 459, 788
PleI	GAGTC	4 cut(s)	118, 359, 623, 714
PpsI	GAGTC	4 cut(s)	118, 359, 623, 714
PpuMI	RGGWCCY	2 cut(s)	29, 859
PshAI	GACNNNNGTC	1 cut(s)	479
Psp5II	RGGWCCY	2 cut(s)	29, 859
Psp6I	CCWGG	4 cut(s)	221, 358, 710, 855
PspEI	GGTNACC	1 cut(s)	500
PspGI	CCWGG	4 cut(s)	221, 358, 710, 855
PspN4I	GGNNCC	3 cut(s)	357, 747, 944
PspPI	GGNCC	4 cut(s)	29, 355, 705, 859
PspPPI	RGGWCCY	2 cut(s)	29, 859
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	6 cut(s)	195, 245, 295, 548, 812, 944
RsaNI	GTAC	6 cut(s)	194, 244, 294, 547, 811, 943
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	3 cut(s)	168, 458, 787
Sau3AI	GATC	3 cut(s)	423, 516, 841
Sau96I	GGNCC	4 cut(s)	29, 355, 705, 859
ScaI	AGTACT	2 cut(s)	245, 812
SchI	GAGTC	4 cut(s)	118, 359, 624, 714
ScrFI	CCNGG	4 cut(s)	223, 360, 712, 857
SduI	GDGCHC	2 cut(s)	417, 567
SfaNI	GCATC	1 cut(s)	856
SfcI	CTRYAG	1 cut(s)	763
Sfr274I	CTCGAG	1 cut(s)	722
SinI	GGWCC	3 cut(s)	29, 355, 859
SlaI	CTCGAG	1 cut(s)	722
SmlI	CTYRAG	2 cut(s)	133, 722
SmoI	CTYRAG	2 cut(s)	133, 722
Sse9I	AATT	2 cut(s)	11, 647
SseBI	AGGCCT	1 cut(s)	184
SspMI	CTAG	3 cut(s)	681, 939, 948
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	4 cut(s)	221, 358, 710, 855
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	379, 815
TaqI	TCGA	6 cut(s)	426, 432, 531, 723, 780, 864
TaqII	GACCGA	1 cut(s)	519
TasI	AATT	2 cut(s)	11, 647
TatI	WGTACW	2 cut(s)	243, 810
TfiI	GAWTC	2 cut(s)	265, 571
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	934
TseFI	GTSAC	2 cut(s)	362, 500
TseI	GCWGC	3 cut(s)	167, 457, 786
Tsp45I	GTSAC	2 cut(s)	362, 500
TspDTI	ATGAA	3 cut(s)	23, 306, 683
TspRI	CASTG	1 cut(s)	934
VpaK11BI	GGWCC	3 cut(s)	29, 355, 859
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	647
XhoI	CTCGAG	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	3 cut(s)	681, 939, 948
ZrmI	AGTACT	2 cut(s)	245, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.