Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Forward (+)

10359740 .. 10362632

Gene Structure 2893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1134600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAGCTCCCCTGAAAACGCCGGTTGCGGTGCCGTTCGGCAGAAACTACATGCCCACTTGGGCATTTGATCACATCAAGTACTTCAATGGAGGCAATGAGATCCAGTTGCATCTCGACAAGTACACAGGTACTGGCTTCCAATCGAAAGGAAATTACTTGTTCGGCCACTTCCATATGCAAATTAAGATGGTTCCTGGGGACTCTGCTGGAACTGTTACTGCATTCTATCTGTCTTCGCAAAACAACGAGCACGACGAGATCGATTTCGAGTTCTTGGGGAACAGGACAGGGCAGCCCTACATTCTGCAGACCAATGTGTTCACAGGAGGAAAGGGGGATAGAGAGCAGAGGATTTTCCTCTGGTTCGATCCCACTGCAGCTTACCACTCCTACGCTGTCCTCTGGAATCTCTACCAGATTGTATTCCTCGTGGACGACGTACCAATCAGGGTGTTCAAAAACTGCAAAGATTTGGGTGTGAAATTCCCATTTAACCAGCCCATGAAGCTCTACTCCAGCTTGTGGAACGCAGACGACTGGGCCACCAGGGGTGGGCTGGAAAAAACCGATTGGTCTAAGGCCCCGTTCATCGCCACGTACCGGGGTTTCCACATCGACGGCTGCGAGGCCTCCGTCAATGCCAAGTTCTGTGACACACAGGGTAAGAGATGGTGGGACCAGAGGGAGTACCAAGACCTTGATGCTCAGCAATGGAGGAGGCTGAGGTGGGTCCGCCAGAAATACACCATCTACAACTACTGCACTGACCGAGCCCGATACCCTACTATGCCACCAGAGTGCCAGAGGGACAGAGACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

275

Amino Acids

32.12

Weight (kDa)

8.17

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	14 - 194	1.6e-64	Glycosyl hydrolases family 16
XET_C	PF06955	221 - 268	5.8e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	525
AciI	CCGC	2 cut(s)	29, 736
AclWI	GGATC	2 cut(s)	97, 365
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	485
AfaI	GTAC	6 cut(s)	83, 125, 133, 444, 602, 692
AfiI	CCNNNNNNNGG	3 cut(s)	525, 555, 603
AgsI	TTSAA	2 cut(s)	88, 460
AjnI	CCWGG	2 cut(s)	196, 548
AleI	CACNNNNGTG	1 cut(s)	799
AluBI	AGCT	4 cut(s)	8, 383, 511, 522
AluI	AGCT	4 cut(s)	8, 383, 511, 522
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	810
AlwI	GGATC	2 cut(s)	97, 365
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	4 cut(s)	166, 543, 582, 630
ApeKI	GCWGC	4 cut(s)	5, 295, 380, 624
ApoI	RAATTY	1 cut(s)	485
AspS9I	GGNCC	4 cut(s)	543, 583, 679, 733
AsuC2I	CCSGG	1 cut(s)	605
AvaII	GGWCC	2 cut(s)	679, 733
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	725
BbvI	GCAGC	4 cut(s)	17, 307, 392, 611
BccI	CCATC	3 cut(s)	184, 666, 758
BceAI	ACGGC	2 cut(s)	19, 637
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	2 cut(s)	198, 550
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	810
BfmI	CTRYAG	2 cut(s)	308, 378
BisI	GCNGC	4 cut(s)	6, 296, 381, 625
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	4 cut(s)	7, 297, 382, 626
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	198, 550, 605
Bme18I	GGWCC	2 cut(s)	679, 733
BmgT120I	GGNCC	4 cut(s)	543, 583, 679, 733
BmiI	GGNNCC	5 cut(s)	33, 195, 585, 680, 734
BmrFI	CCNGG	3 cut(s)	198, 550, 605
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	2 cut(s)	121, 694
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	502
Bpu10I	CCTNAGC	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	197, 549, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	525, 555, 603
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	106, 139, 545
Bse3DI	GCAATG	2 cut(s)	103, 719
BseBI	CCWGG	2 cut(s)	198, 550
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	197, 549, 604
BseLI	CCNNNNNNNGG	3 cut(s)	525, 555, 603
BseMI	GCAATG	2 cut(s)	103, 719
BseMII	CTCAG	2 cut(s)	716, 722
BseNI	ACTGG	3 cut(s)	106, 139, 545
BseRI	GAGGAG	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	17, 307, 392, 611
BsgI	GTGCAG	1 cut(s)	748
BshFI	GGCC	4 cut(s)	168, 545, 584, 632
BshNI	GGYRCC	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	23, 604
BslFI	GGGAC	2 cut(s)	215, 692
BslI	CCNNNNNNNGG	3 cut(s)	525, 555, 603
BsmAI	GTCTC	1 cut(s)	810
BsmBI	CGTCTC	1 cut(s)	810
BsmFI	GGGAC	2 cut(s)	215, 692
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	168, 545, 584, 632
Bsp1286I	GDGCHC	2 cut(s)	255, 778
Bsp143I	GATC	4 cut(s)	70, 102, 261, 370
Bsp1720I	GCTNAGC	1 cut(s)	708
BspACI	CCGC	2 cut(s)	29, 736
BspANI	GGCC	4 cut(s)	168, 545, 584, 632
BspCNI	CTCAG	2 cut(s)	717, 721
BspDI	ATCGAT	1 cut(s)	264
BspLI	GGNNCC	5 cut(s)	33, 195, 585, 680, 734
BspMAI	CTGCAG	2 cut(s)	312, 382
BspPI	GGATC	2 cut(s)	97, 365
BspT107I	GGYRCC	1 cut(s)	31
BsrDI	GCAATG	2 cut(s)	103, 719
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	106, 139, 545
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	197, 549, 604
BssMI	GATC	4 cut(s)	70, 102, 261, 370
BssSI	CACGAG	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	198, 550
Bst4CI	ACNGT	1 cut(s)	217
BstBAI	YACGTR	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	579, 708, 725
BstKTI	GATC	4 cut(s)	73, 105, 264, 373
BstMAI	GTCTC	1 cut(s)	810
BstMBI	GATC	4 cut(s)	70, 102, 261, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	2 cut(s)	198, 550
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	196, 548, 603
BstSFI	CTRYAG	2 cut(s)	308, 378
BstV1I	GCAGC	4 cut(s)	17, 307, 392, 611
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	4 cut(s)	168, 545, 584, 632
BsuTUI	ATCGAT	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	577
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	375, 765
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	4 cut(s)	543, 583, 679, 733
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	6 cut(s)	82, 124, 132, 443, 601, 691
CviAII	CATG	2 cut(s)	52, 505
CviQI	GTAC	6 cut(s)	82, 124, 132, 443, 601, 691
DdeI	CTNAG	3 cut(s)	579, 708, 725
DpnI	GATC	4 cut(s)	72, 104, 263, 372
DpnII	GATC	4 cut(s)	70, 102, 261, 370
EaeI	YGGCCR	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	725
Eco147I	AGGCCT	1 cut(s)	632
Eco24I	GRGCYC	1 cut(s)	778
Eco47I	GGWCC	2 cut(s)	679, 733
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	196, 548
EcoT38I	GRGCYC	1 cut(s)	778
Esp3I	CGTCTC	1 cut(s)	810
FaeI	CATG	2 cut(s)	55, 508
FaiI	YATR	6 cut(s)	53, 177, 179, 506, 791, 823
FaqI	GGGAC	2 cut(s)	215, 692
FatI	CATG	2 cut(s)	51, 504
FauNDI	CATATG	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	6, 296, 381, 625
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	4 cut(s)	6, 296, 381, 625
GluI	GCNGC	4 cut(s)	6, 296, 381, 625
GsuI	CTGGAG	1 cut(s)	502
HaeIII	GGCC	4 cut(s)	168, 545, 584, 632
HapII	CCGG	2 cut(s)	23, 604
Hin1II	CATG	2 cut(s)	55, 508
HinfI	GANTC	2 cut(s)	203, 409
HpaII	CCGG	2 cut(s)	23, 604
Hpy166II	GTNNAC	3 cut(s)	126, 324, 436
Hpy188III	TCNNGA	2 cut(s)	116, 406
Hpy8I	GTNNAC	3 cut(s)	126, 324, 436
Hpy99I	CGWCG	3 cut(s)	260, 443, 623
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	3 cut(s)	441, 599, 819
HpyCH4V	TGCA	7 cut(s)	112, 181, 224, 310, 380, 468, 765
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	3 cut(s)	579, 708, 725
HpySE526I	ACGT	3 cut(s)	441, 599, 819
Hsp92II	CATG	2 cut(s)	55, 508
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	70, 102, 261, 370
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	4 cut(s)	17, 307, 392, 611
LweI	GCATC	2 cut(s)	121, 694
MaeII	ACGT	3 cut(s)	441, 599, 819
MaeIII	GTNAC	2 cut(s)	217, 653
MalI	GATC	4 cut(s)	72, 104, 263, 372
MboI	GATC	4 cut(s)	70, 102, 261, 370
MboII	GAAGA	1 cut(s)	228
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	255, 778
MluCI	AATT	3 cut(s)	154, 183, 485
MlyI	GAGTC	1 cut(s)	197
MseI	TTAA	2 cut(s)	186, 495
MslI	CAYNNNNRTG	1 cut(s)	799
MspI	CCGG	2 cut(s)	23, 604
MspR9I	CCNGG	3 cut(s)	198, 550, 605
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	2 cut(s)	198, 550
MwoI	GCNNNNNNNGC	1 cut(s)	508
NciI	CCSGG	1 cut(s)	605
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	4 cut(s)	70, 102, 261, 370
NlaIII	CATG	2 cut(s)	55, 508
NlaIV	GGNNCC	5 cut(s)	33, 195, 585, 680, 734
NmuCI	GTSAC	1 cut(s)	653
NspI	RCATGY	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	4 cut(s)	255, 261, 438, 624
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	409
PflMI	CCANNNNNTGG	1 cut(s)	525
PkrI	GCNGC	4 cut(s)	7, 297, 382, 626
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	196, 548
PspGI	CCWGG	2 cut(s)	196, 548
PspN4I	GGNNCC	5 cut(s)	33, 195, 585, 680, 734
PspPI	GGNCC	4 cut(s)	543, 583, 679, 733
PstI	CTGCAG	2 cut(s)	312, 382
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	6 cut(s)	83, 125, 133, 444, 602, 692
RsaNI	GTAC	6 cut(s)	82, 124, 132, 443, 601, 691
RseI	CAYNNNNRTG	1 cut(s)	799
SaqAI	TTAA	2 cut(s)	186, 495
SatI	GCNGC	4 cut(s)	6, 296, 381, 625
Sau3AI	GATC	4 cut(s)	70, 102, 261, 370
Sau96I	GGNCC	4 cut(s)	543, 583, 679, 733
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	3 cut(s)	198, 550, 605
SduI	GDGCHC	2 cut(s)	255, 778
SfaNI	GCATC	2 cut(s)	121, 694
SfcI	CTRYAG	2 cut(s)	308, 378
SinI	GGWCC	2 cut(s)	679, 733
SmiMI	CAYNNNNRTG	1 cut(s)	799
Sse9I	AATT	3 cut(s)	154, 183, 485
SseBI	AGGCCT	1 cut(s)	632
SsiI	CCGC	2 cut(s)	29, 736
StuI	AGGCCT	1 cut(s)	632
StyD4I	CCNGG	3 cut(s)	196, 548, 603
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	3 cut(s)	444, 602, 822
TaqI	TCGA	6 cut(s)	117, 146, 264, 270, 369, 618
TaqII	GACCGA	1 cut(s)	786
TasI	AATT	3 cut(s)	154, 183, 485
TatI	WGTACW	2 cut(s)	81, 123
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	2 cut(s)	186, 495
Tru9I	TTAA	2 cut(s)	186, 495
TscAI	CASTG	2 cut(s)	382, 772
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	4 cut(s)	5, 295, 380, 624
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	2 cut(s)	521, 580
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	2 cut(s)	382, 772
Van91I	CCANNNNNTGG	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	679, 733
XapI	RAATTY	1 cut(s)	485
XceI	RCATGY	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.