Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Reverse (-)

4474922 .. 4477090

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGTCGTCTTTCATCAACTCTCTGCCTCACGTTTCTGATTTTGGCCACAGTTGCATTTGGTGTACCTCCTAAAAAGTCCATTAATGTTCCATTTGGGAGGAACTACTTCCCCACTTGGGCTTTTGATCACATTAAGTATCTCAATGGTGGTTCTGAAGTGCATCTTGTCCTCGACAAGTACACTGGCACTGGCTTTCAGTCCAAAGGTTCCTACTTGTTTGGCCACTTCAGTATGCACATAAAGATGGTTGCTGGTGACTCTGCTGGAACTGTGACCGCCTTCTATTTGTCGTCCCAGAACTCAGAACATGATGAGATAGACTTTGAGTTTCTAGGGAACAGAACTGGCCAGCCTTACATTTTGCAGACTAACGTGTTTACAGGAGGCGCCGGAAACCGTGAGCAACGAATCAACCTCTGGTTTGATCCTTCCAAGGACTATCATTCCTATTCAGTTCTCTGGAACATGTATCAGATTGTGTTCTTTGTGGATGATGTGCCGATACGAGTGTTCAAGAATAGCAAAGACGTTGGGGTGAAGTTTCCATTCAACCAACCAATGAAGATATATTCGAGTCTGTGGAATGCAGACGACTGGGCCACAAGGGGAGGGTTGGAGAAGACCAACTGGGAAAAAGCTCCTTTTGTCGCGTCCTACAGAGGCTTCCACGTCGATGGATGTGAAGCTTCAGTAAATGCTAAGTTCTGCGAGACGCAGGGAAAACGTTGGTGGGATCAGAAAGAGTTCCAGGACTTGGACGCTAACCAGTACAAGCGTCTCAAATGGGTTCGTAAGAGATACACCATCTACAACTATTGCACTGACCGCGTCCGATTTCCCGTACCTCCTCCAGAGTGCCGCAGAGACCGCGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

293

Amino Acids

33.95

Weight (kDa)

8.93

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	33 - 212	1.4e-64	Glycosyl hydrolases family 16
XET_C	PF06955	240 - 287	7.1e-20	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccII	CGCG	3 cut(s)	653, 831, 873
AciI	CCGC	4 cut(s)	279, 829, 862, 871
AclI	AACGTT	1 cut(s)	727
AclWI	GGATC	2 cut(s)	422, 744
AcoI	YGGCCR	3 cut(s)	45, 223, 349
AcuI	CTGAAG	3 cut(s)	177, 214, 675
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	4 cut(s)	66, 182, 773, 846
AfiI	CCNNNNNNNGG	2 cut(s)	118, 757
AflIII	ACRYGT	2 cut(s)	375, 468
AgsI	TTSAA	2 cut(s)	517, 553
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	2 cut(s)	641, 689
AluI	AGCT	2 cut(s)	641, 689
Alw26I	GTCTC	3 cut(s)	707, 785, 861
AlwI	GGATC	2 cut(s)	422, 744
AoxI	GGCC	4 cut(s)	45, 223, 349, 600
AseI	ATTAAT	1 cut(s)	84
Asp700I	GAANNNNTTC	2 cut(s)	107, 746
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	600
AsuHPI	GGTGA	2 cut(s)	269, 550
BaeI	ACNNNNGTAYC	2 cut(s)	497, 530
BalI	TGGCCA	3 cut(s)	47, 225, 351
BanI	GGYRCC	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	629
BccI	CCATC	3 cut(s)	241, 671, 815
BciT130I	CCWGG	1 cut(s)	752
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	707, 785, 861
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	658
BfoI	RGCGCY	1 cut(s)	393
BisI	GCNGC	1 cut(s)	862
BlsI	GCNGC	1 cut(s)	863
Bme1390I	CCNGG	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	600
BmiI	GGNNCC	2 cut(s)	211, 391
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	2 cut(s)	607, 640
BmsI	GCATC	1 cut(s)	172
BmuI	ACTGGG	2 cut(s)	607, 640
BpiI	GAAGAC	1 cut(s)	629
BpmI	CTGGAG	1 cut(s)	837
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 757
Bse1I	ACTGG	6 cut(s)	190, 196, 352, 602, 635, 769
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	499, 686
BseLI	CCNNNNNNNGG	2 cut(s)	118, 757
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	6 cut(s)	190, 196, 352, 602, 635, 769
BseRI	GAGGAG	1 cut(s)	840
Bsh1236I	CGCG	3 cut(s)	653, 831, 873
BshFI	GGCC	4 cut(s)	47, 225, 351, 602
BshNI	GGYRCC	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	118, 757
BsmAI	GTCTC	3 cut(s)	707, 785, 861
BsmBI	CGTCTC	2 cut(s)	707, 785
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	4 cut(s)	47, 225, 351, 602
Bso31I	GGTCTC	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	127, 427, 736
BspACI	CCGC	4 cut(s)	279, 829, 862, 871
BspANI	GGCC	4 cut(s)	47, 225, 351, 602
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	3 cut(s)	653, 831, 873
BspLI	GGNNCC	2 cut(s)	211, 391
BspPI	GGATC	2 cut(s)	422, 744
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	861
BsrI	ACTGG	6 cut(s)	190, 196, 352, 602, 635, 769
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	3 cut(s)	127, 427, 736
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	3 cut(s)	52, 274, 401
BstACI	GRCGYC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	304, 702
BstF5I	GGATG	2 cut(s)	499, 686
BstFNI	CGCG	3 cut(s)	653, 831, 873
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	3 cut(s)	130, 430, 739
BstMAI	GTCTC	3 cut(s)	707, 785, 861
BstMBI	GATC	3 cut(s)	127, 427, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 828, 870
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	1 cut(s)	658
BstUI	CGCG	3 cut(s)	653, 831, 873
BstV2I	GAAGAC	1 cut(s)	629
BstXI	CCANNNNNNTGG	1 cut(s)	677
BsuRI	GGCC	4 cut(s)	47, 225, 351, 602
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	499, 686
BtsIMutI	CAGTG	3 cut(s)	183, 189, 822
Cac8I	GCNNGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	600
CseI	GACGC	5 cut(s)	642, 724, 767, 770, 820
Csp6I	GTAC	4 cut(s)	65, 181, 772, 845
CviAII	CATG	2 cut(s)	311, 469
CviQI	GTAC	4 cut(s)	65, 181, 772, 845
DdeI	CTNAG	2 cut(s)	304, 702
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	3 cut(s)	129, 429, 738
DpnII	GATC	3 cut(s)	127, 427, 736
EaeI	YGGCCR	3 cut(s)	45, 223, 349
Eco130I	CCWWGG	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	861
Eco57I	CTGAAG	3 cut(s)	177, 214, 675
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	435
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	435
Esp3I	CGTCTC	2 cut(s)	707, 785
FaeI	CATG	2 cut(s)	314, 472
FaiI	YATR	7 cut(s)	236, 242, 312, 470, 571, 878, 880
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	310, 468
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	862
FokI	GGATG	2 cut(s)	506, 693
Fsp4HI	GCNGC	1 cut(s)	862
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	1 cut(s)	862
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	47, 225, 351, 602
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	5 cut(s)	642, 724, 767, 770, 820
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	314, 472
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	3 cut(s)	260, 411, 577
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	2 cut(s)	269, 550
Hpy166II	GTNNAC	3 cut(s)	65, 183, 381
Hpy188I	TCNGA	6 cut(s)	39, 157, 307, 477, 741, 836
Hpy188III	TCNNGA	3 cut(s)	463, 517, 854
Hpy8I	GTNNAC	3 cut(s)	65, 183, 381
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	2 cut(s)	292, 441
HpyCH4III	ACNGT	3 cut(s)	52, 274, 401
HpyCH4IV	ACGT	5 cut(s)	32, 375, 531, 672, 727
HpyCH4V	TGCA	6 cut(s)	56, 163, 238, 367, 590, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 828, 870
HpyF3I	CTNAG	2 cut(s)	304, 702
HpySE526I	ACGT	5 cut(s)	32, 375, 531, 672, 727
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	314, 472
HspAI	GCGC	1 cut(s)	390
KasI	GGCGCC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	127, 427, 736
LmnI	GCTCC	1 cut(s)	646
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	5 cut(s)	32, 375, 531, 672, 727
MaeIII	GTNAC	2 cut(s)	257, 274
MalI	GATC	3 cut(s)	129, 429, 738
MboI	GATC	3 cut(s)	127, 427, 736
MboII	GAAGA	2 cut(s)	577, 634
MlsI	TGGCCA	3 cut(s)	47, 225, 351
MluNI	TGGCCA	3 cut(s)	47, 225, 351
Mly113I	GGCGCC	1 cut(s)	390
MlyI	GAGTC	2 cut(s)	254, 586
MmeI	TCCRAC	1 cut(s)	597
Mox20I	TGGCCA	3 cut(s)	47, 225, 351
MroXI	GAANNNNTTC	2 cut(s)	107, 746
MscI	TGGCCA	3 cut(s)	47, 225, 351
MseI	TTAA	2 cut(s)	84, 135
MslI	CAYNNNNRTG	2 cut(s)	245, 675
Msp20I	TGGCCA	3 cut(s)	47, 225, 351
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	752
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	3 cut(s)	653, 831, 873
MwoI	GCNNNNNNNGC	3 cut(s)	53, 828, 870
NarI	GGCGCC	1 cut(s)	390
NdeII	GATC	3 cut(s)	127, 427, 736
NlaIII	CATG	2 cut(s)	314, 472
NlaIV	GGNNCC	2 cut(s)	211, 391
NmuCI	GTSAC	2 cut(s)	257, 274
NspI	RCATGY	1 cut(s)	472
PciI	ACATGT	1 cut(s)	468
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	2 cut(s)	107, 746
PfeI	GAWTC	1 cut(s)	411
PflFI	GACNNNGTC	1 cut(s)	830
PflMI	CCANNNNNTGG	1 cut(s)	757
PfoI	TCCNGGA	1 cut(s)	750
PkrI	GCNGC	1 cut(s)	863
PleI	GAGTC	2 cut(s)	254, 585
PluTI	GGCGCC	1 cut(s)	393
PpsI	GAGTC	2 cut(s)	254, 585
PscI	ACATGT	1 cut(s)	468
PshBI	ATTAAT	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	2 cut(s)	211, 391
PspPI	GGNCC	1 cut(s)	600
PsyI	GACNNNGTC	1 cut(s)	830
RsaI	GTAC	4 cut(s)	66, 182, 773, 846
RsaNI	GTAC	4 cut(s)	65, 181, 772, 845
RseI	CAYNNNNRTG	2 cut(s)	245, 675
SaqAI	TTAA	2 cut(s)	84, 135
SatI	GCNGC	1 cut(s)	862
Sau3AI	GATC	3 cut(s)	127, 427, 736
Sau96I	GGNCC	1 cut(s)	600
SchI	GAGTC	2 cut(s)	254, 586
ScrFI	CCNGG	1 cut(s)	752
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	658
SfoI	GGCGCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	245, 675
SsiI	CCGC	4 cut(s)	279, 829, 862, 871
SspDI	GGCGCC	1 cut(s)	389
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	3 cut(s)	52, 274, 401
TaiI	ACGT	5 cut(s)	35, 378, 534, 675, 730
TaqI	TCGA	3 cut(s)	174, 575, 675
TatI	WGTACW	2 cut(s)	180, 771
TauI	GCSGC	1 cut(s)	864
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	2 cut(s)	84, 135
Tru9I	TTAA	2 cut(s)	84, 135
TscAI	CASTG	3 cut(s)	190, 196, 829
TseFI	GTSAC	2 cut(s)	257, 274
Tsp45I	GTSAC	2 cut(s)	257, 274
TspDTI	ATGAA	1 cut(s)	578
TspRI	CASTG	3 cut(s)	190, 196, 829
Tth111I	GACNNNGTC	1 cut(s)	830
Van91I	CCANNNNNTGG	1 cut(s)	757
VspI	ATTAAT	1 cut(s)	84
XceI	RCATGY	1 cut(s)	472
XmnI	GAANNNNTTC	2 cut(s)	107, 746
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.