Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Forward (+)

8002186 .. 8004800

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCAGATAAAATCCCACACTACAAATAGGGCTGCCCTCCTCTCATTTTTCCTCATCACACCTCAAAGTGTCTCTCTTTCTCTTCCTCTTCTTCTCTGTGCTGGAGAGAAAATGGCTTCTTGCAAACAATGGACTGTGTTTTTGAGTTTGCTGTGTTTGGTCTCAGCAACAATGGCAGCTCCCCTGAAAAAGCCAGTTGCGGTGCCGTTTGGCAGAAACTACATGCCCACTTGGGCTTTTGATCACATCAAGTACTTCAATGGAGGCAAAGAGATCCAGTTGCATCTCGACAAATACACAGGTACTGGCTTTCAATCAAAAGGAAATTACTTGTTTGGCCACTTCCATATGCAAATTAAGATGGTTCCTGGGGATTCTGCTGGAACTGTTACTGCTTATTATCTGTCTTCACAAAACAACGAACACGACGAGATCGATTTCGAGTTCTTGGGGAACAGGACTGGACAGCCATACATTCTGCAGACCAATGTGTTCACGGGAGGAAAGGGGGATAGAGAGCAGAGGATTTTCCTCTGGTTCGACCCTACTGCAGCTTACCACTCCTACGCCGTCCTCTGGAATCTCTACCAGATTGTATTCTTGGTGGACGACATACCGATCAGGGTGTTCAAAAACAGCAAAGATTTGGGTGTGAAATTCCCATTTAACCAGCCCATGAAGCTCTACTCCAGCCTGTGGAACGCAGACGATTGGGCTACTCGGGGTGGTCTGGAAAAGACCGATTGGTCCAAGGCCCCGTTCATCGCCAGCTACCGGGGCTTCCACATCGACGGTTGCGAGGCCTCCGTCGAAGCCAAGTTTTGTGCCACCCAGGGTAAGAGGTGGTGGGACCAGAAGGAGTTCCAAGACCTTGATGCTCAGCAATGGAGGAGGCTGAGGTGGGTCCGAAGGAAATTCACCATCTACAACTACTGCACTGACCGAGTCAGATACCCTTCTATGCCACCGGAGTGCAAGAGGGACAGAGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

332

Amino Acids

38.33

Weight (kDa)

9.1

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	745
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	696
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	2 cut(s)	656, 914
AfaI	GTAC	2 cut(s)	254, 304
AfiI	CCNNNNNNNGG	3 cut(s)	576, 696, 774
AgsI	TTSAA	3 cut(s)	259, 314, 631
AjnI	CCWGG	2 cut(s)	367, 831
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AleI	CACNNNNGTG	1 cut(s)	970
AluBI	AGCT	4 cut(s)	179, 554, 682, 771
AluI	AGCT	4 cut(s)	179, 554, 682, 771
Alw26I	GTCTC	3 cut(s)	76, 166, 981
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	720
AoxI	GGCC	3 cut(s)	337, 753, 801
ApeKI	GCWGC	3 cut(s)	32, 176, 551
ApoI	RAATTY	2 cut(s)	656, 914
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
Asp700I	GAANNNNTTC	1 cut(s)	860
AspS9I	GGNCC	4 cut(s)	747, 754, 850, 904
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	1 cut(s)	910
AvaI	CYCGRG	1 cut(s)	720
AvaII	GGWCC	3 cut(s)	747, 850, 904
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	896
BbvI	GCAGC	3 cut(s)	19, 188, 563
BccI	CCATC	2 cut(s)	355, 929
BceAI	ACGGC	2 cut(s)	190, 554
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	2 cut(s)	369, 833
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	3 cut(s)	76, 166, 981
BfmI	CTRYAG	2 cut(s)	479, 549
BisI	GCNGC	3 cut(s)	33, 177, 552
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	3 cut(s)	34, 178, 553
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	3 cut(s)	369, 776, 833
Bme18I	GGWCC	3 cut(s)	747, 850, 904
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	4 cut(s)	747, 754, 850, 904
BmiI	GGNNCC	5 cut(s)	204, 366, 756, 851, 905
BmrFI	CCNGG	3 cut(s)	369, 776, 833
BmsI	GCATC	2 cut(s)	292, 865
BpiI	GAAGAC	1 cut(s)	399
BpmI	CTGGAG	2 cut(s)	123, 673
Bpu10I	CCTNAGC	1 cut(s)	896
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuMI	CCSGG	1 cut(s)	776
Bsa29I	ATCGAT	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	5 cut(s)	368, 750, 775, 831, 832
BsaWI	WCCGGW	1 cut(s)	967
Bsc4I	CCNNNNNNNGG	3 cut(s)	576, 696, 774
Bse1I	ACTGG	4 cut(s)	194, 277, 310, 466
Bse3DI	GCAATG	1 cut(s)	890
BseBI	CCWGG	2 cut(s)	369, 833
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	5 cut(s)	368, 750, 775, 831, 832
BseLI	CCNNNNNNNGG	3 cut(s)	576, 696, 774
BseMI	GCAATG	1 cut(s)	890
BseMII	CTCAG	3 cut(s)	177, 887, 893
BseNI	ACTGG	4 cut(s)	194, 277, 310, 466
BseRI	GAGGAG	2 cut(s)	29, 904
BseXI	GCAGC	3 cut(s)	19, 188, 563
BsgI	GTGCAG	1 cut(s)	919
BshFI	GGCC	3 cut(s)	339, 755, 803
BshNI	GGYRCC	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	775, 968
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	3 cut(s)	576, 696, 774
BsmAI	GTCTC	3 cut(s)	76, 166, 981
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	3 cut(s)	339, 755, 803
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	241, 273, 432, 618
Bsp1720I	GCTNAGC	1 cut(s)	879
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	3 cut(s)	339, 755, 803
BspCNI	CTCAG	3 cut(s)	176, 888, 892
BspDI	ATCGAT	1 cut(s)	435
BspLI	GGNNCC	5 cut(s)	204, 366, 756, 851, 905
BspMAI	CTGCAG	2 cut(s)	483, 553
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	890
BsrI	ACTGG	4 cut(s)	194, 277, 310, 466
BssECI	CCNNGG	5 cut(s)	368, 750, 775, 831, 832
BssMI	GATC	4 cut(s)	241, 273, 432, 618
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	369, 833
Bst4CI	ACNGT	3 cut(s)	136, 388, 794
Bst6I	CTCTTC	2 cut(s)	87, 93
BstC8I	GCNNGC	1 cut(s)	769
BstDEI	CTNAG	3 cut(s)	163, 879, 896
BstKTI	GATC	4 cut(s)	244, 276, 435, 621
BstMAI	GTCTC	3 cut(s)	76, 166, 981
BstMBI	GATC	4 cut(s)	241, 273, 432, 618
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 679, 777
BstNI	CCWGG	2 cut(s)	369, 833
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	3 cut(s)	367, 774, 831
BstSFI	CTRYAG	2 cut(s)	479, 549
BstV1I	GCAGC	3 cut(s)	19, 188, 563
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	339, 755, 803
BsuTUI	ATCGAT	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	748
BtsIMutI	CAGTG	1 cut(s)	936
Cac8I	GCNNGC	1 cut(s)	769
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	4 cut(s)	747, 754, 850, 904
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	253, 303
CviAII	CATG	2 cut(s)	223, 676
CviQI	GTAC	2 cut(s)	253, 303
DdeI	CTNAG	3 cut(s)	163, 879, 896
DpnI	GATC	4 cut(s)	243, 275, 434, 620
DpnII	GATC	4 cut(s)	241, 273, 432, 618
DrdI	GACNNNNNNGTC	1 cut(s)	745
DseDI	GACNNNNNNGTC	1 cut(s)	745
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	87, 93
EarI	CTCTTC	2 cut(s)	87, 93
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	803
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	3 cut(s)	747, 850, 904
Eco88I	CYCGRG	1 cut(s)	720
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	367, 831
EcoT14I	CCWWGG	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	2 cut(s)	226, 679
FaiI	YATR	9 cut(s)	224, 348, 350, 472, 614, 677, 962, 992, 994
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	2 cut(s)	222, 675
FauNDI	CATATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	33, 177, 552
Fsp4HI	GCNGC	3 cut(s)	33, 177, 552
GluI	GCNGC	3 cut(s)	33, 177, 552
GsuI	CTGGAG	2 cut(s)	123, 673
HaeIII	GGCC	3 cut(s)	339, 755, 803
HapII	CCGG	2 cut(s)	775, 968
Hin1II	CATG	2 cut(s)	226, 679
HinfI	GANTC	3 cut(s)	374, 580, 945
HpaII	CCGG	2 cut(s)	775, 968
HphI	GGTGA	1 cut(s)	910
Hpy166II	GTNNAC	2 cut(s)	495, 607
Hpy188I	TCNGA	2 cut(s)	908, 950
Hpy188III	TCNNGA	3 cut(s)	287, 577, 731
Hpy8I	GTNNAC	2 cut(s)	495, 607
Hpy99I	CGWCG	3 cut(s)	431, 794, 812
HpyAV	CCTTC	3 cut(s)	850, 903, 966
HpyCH4III	ACNGT	3 cut(s)	136, 388, 794
HpyCH4V	TGCA	8 cut(s)	4, 123, 283, 352, 481, 551, 936, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 679, 777
HpyF3I	CTNAG	3 cut(s)	163, 879, 896
Hsp92II	CATG	2 cut(s)	226, 679
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	4 cut(s)	241, 273, 432, 618
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	3 cut(s)	19, 188, 563
LweI	GCATC	2 cut(s)	292, 865
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	4 cut(s)	243, 275, 434, 620
MboI	GATC	4 cut(s)	241, 273, 432, 618
MboII	GAAGA	4 cut(s)	74, 80, 83, 399
MflI	RGATCY	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	4 cut(s)	325, 354, 656, 914
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	954
Mox20I	TGGCCA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	860
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	2 cut(s)	357, 666
MslI	CAYNNNNRTG	1 cut(s)	970
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	2 cut(s)	775, 968
MspR9I	CCNGG	3 cut(s)	369, 776, 833
MvaI	CCWGG	2 cut(s)	369, 833
MwoI	GCNNNNNNNGC	3 cut(s)	173, 679, 777
NciI	CCSGG	1 cut(s)	776
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	4 cut(s)	241, 273, 432, 618
NlaIII	CATG	2 cut(s)	226, 679
NlaIV	GGNNCC	5 cut(s)	204, 366, 756, 851, 905
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	970
PasI	CCCWGGG	1 cut(s)	832
PceI	AGGCCT	1 cut(s)	803
PcsI	WCGNNNNNNNCGW	3 cut(s)	426, 432, 795
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	2 cut(s)	374, 580
PflFI	GACNNNGTC	1 cut(s)	944
PflMI	CCANNNNNTGG	1 cut(s)	696
PkrI	GCNGC	3 cut(s)	34, 178, 553
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
Psp6I	CCWGG	2 cut(s)	367, 831
PspGI	CCWGG	2 cut(s)	367, 831
PspN4I	GGNNCC	5 cut(s)	204, 366, 756, 851, 905
PspPI	GGNCC	4 cut(s)	747, 754, 850, 904
PstI	CTGCAG	2 cut(s)	483, 553
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	273
PsyI	GACNNNGTC	1 cut(s)	944
RsaI	GTAC	2 cut(s)	254, 304
RsaNI	GTAC	2 cut(s)	253, 303
RseI	CAYNNNNRTG	1 cut(s)	970
SaqAI	TTAA	2 cut(s)	357, 666
SatI	GCNGC	3 cut(s)	33, 177, 552
Sau3AI	GATC	4 cut(s)	241, 273, 432, 618
Sau96I	GGNCC	4 cut(s)	747, 754, 850, 904
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	1 cut(s)	954
ScrFI	CCNGG	3 cut(s)	369, 776, 833
SetI	ASST	9 cut(s)	64, 181, 304, 556, 684, 773, 845, 873, 902
SfaNI	GCATC	2 cut(s)	292, 865
SfcI	CTRYAG	2 cut(s)	479, 549
SinI	GGWCC	3 cut(s)	747, 850, 904
SmiMI	CAYNNNNRTG	1 cut(s)	970
Sse9I	AATT	4 cut(s)	325, 354, 656, 914
SseBI	AGGCCT	1 cut(s)	803
SsiI	CCGC	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	803
StyD4I	CCNGG	3 cut(s)	367, 774, 831
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	3 cut(s)	136, 388, 794
TaqI	TCGA	6 cut(s)	288, 435, 441, 540, 789, 810
TaqII	GACCGA	2 cut(s)	755, 957
TasI	AATT	4 cut(s)	325, 354, 656, 914
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	374, 580
Tru1I	TTAA	2 cut(s)	357, 666
Tru9I	TTAA	2 cut(s)	357, 666
TscAI	CASTG	1 cut(s)	943
TseI	GCWGC	3 cut(s)	32, 176, 551
TspDTI	ATGAA	2 cut(s)	692, 751
TspGWI	ACGGA	1 cut(s)	796
TspRI	CASTG	1 cut(s)	943
Tth111I	GACNNNGTC	1 cut(s)	944
Van91I	CCANNNNNTGG	1 cut(s)	696
VpaK11BI	GGWCC	3 cut(s)	747, 850, 904
XapI	RAATTY	2 cut(s)	656, 914
XceI	RCATGY	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	860
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.