Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Forward (+)

14165647 .. 14168389

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTGACCCGTTATTTGAGATCTAAGTTATTTATTCAGGCAACCCCTATTAAAGGACCTCCCCTCCTTCCCATTTCCTCATCACAACTGAAACCACTCTCTCACTCTCTCTGTGTTGCACAGAGAAAAATGGTTTCTTACAAGCAATGGACTCTGCTCTTGAGCTTAGTGCTTATGGTCTCTGCAACAATGGCAGCTCCCCCAAAGAGGCCTGTGGCTGTACCCTTTGGAAGAAACTACCAGCCCACCTGGGCTTTTGACCACATCAAGTACTACAATGGTGGCAATGAGATTCAGCTCCACCTTGACAAATACACAGGTACTGGTTTCCAATCCAAAGGTTCATACTTGTTTGGCCATTTCCATATGCAAATCAAACTGGTCCCTGGTGACTCTGCTGGAACTGTTACTGCTTTCTATCTGTCTTCTACAAACTCAGAGCACGATGAGATCGACTTCGAGTTCTTGGGGAACAGAACAGGGCAGCCCTACATTTTGCAGACCAATGTCTTCACCGGAGGAAAGGGTGACCGAGAACAGAGGATCTTCCTCTGGTTCGACCCAACCAAAGAGTACCACTCCTACTCTGTGCTCTGGAATCTGTACCAGATTGTATTCTTAGTGGATGACATCCCAATCCGAGTGTTCAAGAACAGCAAAGACTTGGGAGTGAAATTCCCATTCAACCAACCCATGAAGCTCTACTCTAGTCTGTGGAACGCAGACGATTGGGCCACCAGGGGAGGACTCGAGAAGACTGACTGGTCTAAGGCTCCCTTCGTGGCCACCTATAGGGGCTTCCATATCGACGGCTGCGAGGCGTCGGTGGAAGCCAAGTACTGTGCCACTCAGGGTAAGAGGTGGTGGGATCAGAAGGAGTACCAGGACCTCGATGCTTATCAATGGAGGAGGCTGAGGTGGGTTAGACAGAGGTTCACCATCTACAACTACTGCACTGACAGGACTAGGTACCCTAGTCTCCCTGCAGAGTGCAAGAGAGACAGAGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

338

Amino Acids

39.25

Weight (kDa)

9.34

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	77 - 257	7.2e-65	Glycosyl hydrolases family 16
XET_C	PF06955	284 - 331	8.3e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	763
Acc65I	GGTACC	1 cut(s)	969
AccB1I	GGYRCC	1 cut(s)	969
AclWI	GGATC	2 cut(s)	551, 876
AcoI	YGGCCR	2 cut(s)	355, 783
AcsI	RAATTY	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	821
AfaI	GTAC	8 cut(s)	222, 272, 322, 575, 605, 839, 881, 971
AfiI	CCNNNNNNNGG	3 cut(s)	53, 207, 792
AgsI	TTSAA	2 cut(s)	649, 685
AjnI	CCWGG	4 cut(s)	248, 385, 737, 882
AluBI	AGCT	4 cut(s)	165, 197, 298, 700
AluI	AGCT	4 cut(s)	165, 197, 298, 700
Alw21I	GWGCWC	2 cut(s)	444, 594
Alw26I	GTCTC	4 cut(s)	184, 983, 993, 999
AlwI	GGATC	2 cut(s)	551, 876
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	749
AoxI	GGCC	4 cut(s)	209, 355, 732, 783
ApeKI	GCWGC	3 cut(s)	194, 484, 813
ApoI	RAATTY	1 cut(s)	674
ArsI	GACNNNNNNTTYG	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	969
AspS9I	GGNCC	4 cut(s)	56, 382, 732, 886
AsuHPI	GGTGA	4 cut(s)	401, 505, 539, 928
AvaI	CYCGRG	1 cut(s)	749
AvaII	GGWCC	3 cut(s)	56, 382, 886
BaeI	ACNNNNGTAYC	2 cut(s)	961, 994
BalI	TGGCCA	2 cut(s)	357, 785
BanI	GGYRCC	1 cut(s)	969
BbsI	GAAGAC	3 cut(s)	417, 502, 761
Bbv12I	GWGCWC	2 cut(s)	444, 594
BbvCI	CCTCAGC	1 cut(s)	914
BbvI	GCAGC	3 cut(s)	206, 496, 800
BccI	CCATC	1 cut(s)	947
BceAI	ACGGC	1 cut(s)	826
BciT130I	CCWGG	4 cut(s)	250, 387, 739, 884
BcoDI	GTCTC	4 cut(s)	184, 983, 993, 999
BfaI	CTAG	3 cut(s)	708, 966, 975
BfmI	CTRYAG	2 cut(s)	790, 984
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	3 cut(s)	195, 485, 814
BlsI	GCNGC	3 cut(s)	196, 486, 815
BmcAI	AGTACT	2 cut(s)	272, 839
Bme1390I	CCNGG	4 cut(s)	250, 387, 739, 884
Bme18I	GGWCC	3 cut(s)	56, 382, 886
BmeT110I	CYCGRG	1 cut(s)	749
BmgT120I	GGNCC	4 cut(s)	56, 382, 732, 886
BmiI	GGNNCC	3 cut(s)	384, 774, 971
BmrFI	CCNGG	4 cut(s)	250, 387, 739, 884
BmsI	GCATC	1 cut(s)	883
BoxI	GACNNNNGTC	1 cut(s)	506
BpiI	GAAGAC	3 cut(s)	417, 502, 761
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
Bpu10I	CCTNAGC	1 cut(s)	914
BpuEI	CTTGAG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	897
BsaHI	GRCGYC	1 cut(s)	821
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	3 cut(s)	249, 385, 738
BsaWI	WCCGGW	1 cut(s)	515
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 207, 792
Bse1I	ACTGG	3 cut(s)	328, 384, 767
Bse3DI	GCAATG	2 cut(s)	152, 292
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	4 cut(s)	250, 387, 739, 884
BseDI	CCNNGG	3 cut(s)	249, 385, 738
BseGI	GGATG	2 cut(s)	630, 631
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	3 cut(s)	53, 207, 792
BseMI	GCAATG	2 cut(s)	152, 292
BseMII	CTCAG	3 cut(s)	450, 863, 905
BseNI	ACTGG	3 cut(s)	328, 384, 767
BseRI	GAGGAG	1 cut(s)	922
BseXI	GCAGC	3 cut(s)	206, 496, 800
BsgI	GTGCAG	1 cut(s)	937
BshFI	GGCC	4 cut(s)	211, 357, 734, 785
BshNI	GGYRCC	1 cut(s)	969
BsiHKAI	GWGCWC	2 cut(s)	444, 594
BsiHKCI	CYCGRG	1 cut(s)	749
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	53, 207, 792
BsmAI	GTCTC	4 cut(s)	184, 983, 993, 999
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	4 cut(s)	211, 357, 734, 785
Bso31I	GGTCTC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	749
Bsp1286I	GDGCHC	2 cut(s)	444, 594
Bsp143I	GATC	4 cut(s)	20, 450, 543, 868
BspANI	GGCC	4 cut(s)	211, 357, 734, 785
BspCNI	CTCAG	3 cut(s)	449, 862, 906
BspLI	GGNNCC	3 cut(s)	384, 774, 971
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	2 cut(s)	551, 876
BspT107I	GGYRCC	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	184
BsrDI	GCAATG	2 cut(s)	152, 292
BsrI	ACTGG	3 cut(s)	328, 384, 767
BssECI	CCNNGG	3 cut(s)	249, 385, 738
BssMI	GATC	4 cut(s)	20, 450, 543, 868
BssNI	GRCGYC	1 cut(s)	821
Bst2UI	CCWGG	4 cut(s)	250, 387, 739, 884
Bst4CI	ACNGT	2 cut(s)	406, 842
BstACI	GRCGYC	1 cut(s)	821
BstDEI	CTNAG	7 cut(s)	24, 166, 436, 619, 768, 849, 914
BstEII	GGTNACC	1 cut(s)	527
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	630, 631
BstKTI	GATC	4 cut(s)	23, 453, 546, 871
BstMAI	GTCTC	4 cut(s)	184, 983, 993, 999
BstMBI	GATC	4 cut(s)	20, 450, 543, 868
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	4 cut(s)	250, 387, 739, 884
BstPAI	GACNNNNGTC	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	527
BstSCI	CCNGG	4 cut(s)	248, 385, 737, 882
BstSFI	CTRYAG	2 cut(s)	790, 984
BstV1I	GCAGC	3 cut(s)	206, 496, 800
BstV2I	GAAGAC	3 cut(s)	417, 502, 761
BstX2I	RGATCY	2 cut(s)	20, 543
BstYI	RGATCY	2 cut(s)	20, 543
BsuRI	GGCC	4 cut(s)	211, 357, 734, 785
BtsCI	GGATG	2 cut(s)	630, 631
BtsIMutI	CAGTG	1 cut(s)	954
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	4 cut(s)	56, 382, 732, 886
CseI	GACGC	1 cut(s)	810
Csp6I	GTAC	8 cut(s)	221, 271, 321, 574, 604, 838, 880, 970
CviAII	CATG	1 cut(s)	694
CviQI	GTAC	8 cut(s)	221, 271, 321, 574, 604, 838, 880, 970
DdeI	CTNAG	7 cut(s)	24, 166, 436, 619, 768, 849, 914
DpnI	GATC	4 cut(s)	22, 452, 545, 870
DpnII	GATC	4 cut(s)	20, 450, 543, 868
DrdI	GACNNNNNNGTC	1 cut(s)	763
DseDI	GACNNNNNNGTC	1 cut(s)	763
EaeI	YGGCCR	2 cut(s)	355, 783
Eco147I	AGGCCT	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	56, 382, 886
Eco88I	CYCGRG	1 cut(s)	749
Eco91I	GGTNACC	1 cut(s)	527
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	2 cut(s)	56, 886
EcoO65I	GGTNACC	1 cut(s)	527
EcoRII	CCWGG	4 cut(s)	248, 385, 737, 882
FaeI	CATG	1 cut(s)	697
FaiI	YATR	9 cut(s)	176, 346, 366, 368, 695, 792, 804, 1010, 1012
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	693
FauNDI	CATATG	2 cut(s)	366, 1010
Fnu4HI	GCNGC	3 cut(s)	195, 485, 814
FokI	GGATG	2 cut(s)	617, 638
Fsp4HI	GCNGC	3 cut(s)	195, 485, 814
FspBI	CTAG	3 cut(s)	708, 966, 975
GluI	GCNGC	3 cut(s)	195, 485, 814
HaeIII	GGCC	4 cut(s)	211, 357, 734, 785
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	810
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	151, 292, 392, 598, 747
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	4 cut(s)	401, 505, 539, 928
Hpy166II	GTNNAC	2 cut(s)	6, 936
Hpy188I	TCNGA	3 cut(s)	439, 641, 873
Hpy188III	TCNNGA	4 cut(s)	160, 595, 649, 751
Hpy8I	GTNNAC	2 cut(s)	6, 936
Hpy99I	CGWCG	2 cut(s)	812, 826
HpyAV	CCTTC	3 cut(s)	77, 787, 868
HpyCH4III	ACNGT	2 cut(s)	406, 842
HpyCH4V	TGCA	7 cut(s)	119, 185, 370, 499, 954, 986, 993
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	7 cut(s)	24, 166, 436, 619, 768, 849, 914
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	1 cut(s)	697
KpnI	GGTACC	1 cut(s)	973
Kzo9I	GATC	4 cut(s)	20, 450, 543, 868
LmnI	GCTCC	3 cut(s)	202, 303, 778
Lsp1109I	GCAGC	3 cut(s)	206, 496, 800
LweI	GCATC	1 cut(s)	883
MaeI	CTAG	3 cut(s)	708, 966, 975
MaeIII	GTNAC	3 cut(s)	389, 406, 527
MalI	GATC	4 cut(s)	22, 452, 545, 870
MboI	GATC	4 cut(s)	20, 450, 543, 868
MboII	GAAGA	5 cut(s)	243, 417, 502, 538, 766
MflI	RGATCY	2 cut(s)	20, 543
MhlI	GDGCHC	2 cut(s)	444, 594
MlsI	TGGCCA	2 cut(s)	357, 785
MluCI	AATT	1 cut(s)	674
MluNI	TGGCCA	2 cut(s)	357, 785
MlyI	GAGTC	3 cut(s)	145, 386, 741
Mox20I	TGGCCA	2 cut(s)	357, 785
MscI	TGGCCA	2 cut(s)	357, 785
MseI	TTAA	1 cut(s)	51
Msp20I	TGGCCA	2 cut(s)	357, 785
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	4 cut(s)	250, 387, 739, 884
MvaI	CCWGG	4 cut(s)	250, 387, 739, 884
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeI	CATATG	2 cut(s)	366, 1010
NdeII	GATC	4 cut(s)	20, 450, 543, 868
NlaIII	CATG	1 cut(s)	697
NlaIV	GGNNCC	3 cut(s)	384, 774, 971
NmuCI	GTSAC	2 cut(s)	389, 527
PaeR7I	CTCGAG	1 cut(s)	749
PceI	AGGCCT	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	2 cut(s)	450, 813
PfeI	GAWTC	2 cut(s)	292, 598
PkrI	GCNGC	3 cut(s)	196, 486, 815
PleI	GAGTC	3 cut(s)	145, 386, 741
PpsI	GAGTC	3 cut(s)	145, 386, 741
PpuMI	RGGWCCY	2 cut(s)	56, 886
PshAI	GACNNNNGTC	1 cut(s)	506
Psp5II	RGGWCCY	2 cut(s)	56, 886
Psp6I	CCWGG	4 cut(s)	248, 385, 737, 882
PspEI	GGTNACC	1 cut(s)	527
PspGI	CCWGG	4 cut(s)	248, 385, 737, 882
PspN4I	GGNNCC	3 cut(s)	384, 774, 971
PspPI	GGNCC	4 cut(s)	56, 382, 732, 886
PspPPI	RGGWCCY	2 cut(s)	56, 886
PstI	CTGCAG	1 cut(s)	988
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	2 cut(s)	20, 543
RsaI	GTAC	8 cut(s)	222, 272, 322, 575, 605, 839, 881, 971
RsaNI	GTAC	8 cut(s)	221, 271, 321, 574, 604, 838, 880, 970
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	195, 485, 814
Sau3AI	GATC	4 cut(s)	20, 450, 543, 868
Sau96I	GGNCC	4 cut(s)	56, 382, 732, 886
ScaI	AGTACT	2 cut(s)	272, 839
SchI	GAGTC	3 cut(s)	145, 386, 741
ScrFI	CCNGG	4 cut(s)	250, 387, 739, 884
SduI	GDGCHC	2 cut(s)	444, 594
SfaNI	GCATC	1 cut(s)	883
SfcI	CTRYAG	2 cut(s)	790, 984
Sfr274I	CTCGAG	1 cut(s)	749
SinI	GGWCC	3 cut(s)	56, 382, 886
SlaI	CTCGAG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	160, 749
SmoI	CTYRAG	2 cut(s)	160, 749
Sse9I	AATT	1 cut(s)	674
SseBI	AGGCCT	1 cut(s)	211
SspMI	CTAG	3 cut(s)	708, 966, 975
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	4 cut(s)	248, 385, 737, 882
TaaI	ACNGT	2 cut(s)	406, 842
TaqI	TCGA	6 cut(s)	453, 459, 558, 750, 807, 891
TaqII	GACCGA	1 cut(s)	546
TasI	AATT	1 cut(s)	674
TatI	WGTACW	2 cut(s)	270, 837
TfiI	GAWTC	2 cut(s)	292, 598
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	2 cut(s)	389, 527
TseI	GCWGC	3 cut(s)	194, 484, 813
Tsp45I	GTSAC	2 cut(s)	389, 527
TspDTI	ATGAA	2 cut(s)	333, 710
TspRI	CASTG	1 cut(s)	961
VpaK11BI	GGWCC	3 cut(s)	56, 382, 886
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	1 cut(s)	674
XhoI	CTCGAG	1 cut(s)	749
XspI	CTAG	3 cut(s)	708, 966, 975
ZrmI	AGTACT	2 cut(s)	272, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.