Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Reverse (-)

59655949 .. 59658727

Gene Structure 2779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG281700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTCTTACAAGCAATGGACTCTGCTCTTGAGCTTAGTGCTTATGGTCTCTGCAACAATGGCAGCTCCCCCAAGGAGGCCTGTGGCTGTACCCTTTGGAAGAAACTACCAGCCCACCTGGGCTTTTGACCACATCAAGTACTACAATGGTGGCAATGAGATTCAGCTCCACCTTGACAAATACACAGGTACTGGTTTCCAATCCAAAGGTTCATACTTGTTTGGCCATTTCCATATGCAAATCAAACTGGTCCCTGGTGACTCTGCTGGAACTGTTACTGCTTTCTATCTGTCTTCTACAAACTCAGAGCACGATGAGATCGACTTCGAGTTCTTGGGGAACAGAACAGGGCAGCCTTACATTTTGCAGACCAATGTCTTCACCGGAGGAAAGGGTGACCGAGAACAGAGGATCTTCCTCTGGTTCGACCCAACTAAAGAGTACCACTCCTACTCTGTGCTCTGGAATCTCTACCAGATTGTATTCTTAGTGGATGACATCCCAATCCGAGTGTTCAAGAACAGCAAAGACTTGGGAGTGAAATTCCCATTCAACCAACCCATGAAGCTCTACTCTAGTCTGTGGAACGCAGACGATTGGGCCACCAGGGGAGGACTCGAGAAGACTGACTGGTCTAAGGCTCCCTTCGTGGCCACCTATAGGGGCTTCCATATCGACGGCTGCGAGGCGTCGGTGGAAGCCAAGTACTGTGCCACTCAGGGTAAGAGGTGGTGGGATCAGAAGGAGTTCCAGGACCTCGATGCTTATCAATGGAGGAGGCTGAGGTGGGTTAGACAGAGGTTCACCATCTACAACTACTGCACTGACAGGACTAGGTACCCTAGTCTCCCTGCGGAGTGCAAGAGAGACAGAGACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

294

Amino Acids

34.43

Weight (kDa)

8.86

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	34 - 214	4.9e-65	Glycosyl hydrolases family 16
XET_C	PF06955	241 - 288	2.5e-17	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	634
Acc65I	GGTACC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	840
AciI	CCGC	1 cut(s)	857
AclWI	GGATC	2 cut(s)	422, 747
AcoI	YGGCCR	2 cut(s)	226, 654
AcsI	RAATTY	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	6 cut(s)	93, 143, 193, 446, 710, 842
AfiI	CCNNNNNNNGG	2 cut(s)	78, 663
AgsI	TTSAA	2 cut(s)	520, 556
AjnI	CCWGG	4 cut(s)	119, 256, 608, 753
AluBI	AGCT	4 cut(s)	36, 68, 169, 571
AluI	AGCT	4 cut(s)	36, 68, 169, 571
Alw21I	GWGCWC	2 cut(s)	315, 465
Alw26I	GTCTC	4 cut(s)	55, 854, 864, 870
AlwI	GGATC	2 cut(s)	422, 747
AlwNI	CAGNNNCTG	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	4 cut(s)	80, 226, 603, 654
ApeKI	GCWGC	3 cut(s)	65, 355, 684
ApoI	RAATTY	1 cut(s)	545
Asp700I	GAANNNNTTC	1 cut(s)	749
Asp718I	GGTACC	1 cut(s)	840
AspS9I	GGNCC	3 cut(s)	253, 603, 757
AsuHPI	GGTGA	4 cut(s)	272, 376, 410, 799
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	253, 757
BaeI	ACNNNNGTAYC	2 cut(s)	832, 865
BalI	TGGCCA	2 cut(s)	228, 656
BanI	GGYRCC	1 cut(s)	840
BbsI	GAAGAC	3 cut(s)	288, 373, 632
Bbv12I	GWGCWC	2 cut(s)	315, 465
BbvCI	CCTCAGC	1 cut(s)	785
BbvI	GCAGC	3 cut(s)	77, 367, 671
BccI	CCATC	1 cut(s)	818
BceAI	ACGGC	1 cut(s)	697
BciT130I	CCWGG	4 cut(s)	121, 258, 610, 755
BcoDI	GTCTC	4 cut(s)	55, 854, 864, 870
BfaI	CTAG	3 cut(s)	579, 837, 846
BfmI	CTRYAG	1 cut(s)	661
BisI	GCNGC	3 cut(s)	66, 356, 685
BlsI	GCNGC	3 cut(s)	67, 357, 686
BmcAI	AGTACT	2 cut(s)	143, 710
Bme1390I	CCNGG	4 cut(s)	121, 258, 610, 755
Bme18I	GGWCC	2 cut(s)	253, 757
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	3 cut(s)	253, 603, 757
BmiI	GGNNCC	3 cut(s)	255, 645, 842
BmrFI	CCNGG	4 cut(s)	121, 258, 610, 755
BmsI	GCATC	1 cut(s)	754
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	3 cut(s)	288, 373, 632
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
Bpu10I	CCTNAGC	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	768
BsaHI	GRCGYC	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	4 cut(s)	74, 120, 256, 609
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 663
Bse1I	ACTGG	3 cut(s)	199, 255, 638
Bse3DI	GCAATG	2 cut(s)	23, 163
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	4 cut(s)	121, 258, 610, 755
BseDI	CCNNGG	4 cut(s)	74, 120, 256, 609
BseGI	GGATG	2 cut(s)	501, 502
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	2 cut(s)	78, 663
BseMI	GCAATG	2 cut(s)	23, 163
BseMII	CTCAG	3 cut(s)	321, 734, 776
BseNI	ACTGG	3 cut(s)	199, 255, 638
BseRI	GAGGAG	1 cut(s)	793
BseXI	GCAGC	3 cut(s)	77, 367, 671
BsgI	GTGCAG	1 cut(s)	808
BshFI	GGCC	4 cut(s)	82, 228, 605, 656
BshNI	GGYRCC	1 cut(s)	840
BsiHKAI	GWGCWC	2 cut(s)	315, 465
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	78, 663
BsmAI	GTCTC	4 cut(s)	55, 854, 864, 870
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	4 cut(s)	82, 228, 605, 656
Bso31I	GGTCTC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	315, 465
Bsp143I	GATC	3 cut(s)	321, 414, 739
BspACI	CCGC	1 cut(s)	857
BspANI	GGCC	4 cut(s)	82, 228, 605, 656
BspCNI	CTCAG	3 cut(s)	320, 733, 777
BspLI	GGNNCC	3 cut(s)	255, 645, 842
BspPI	GGATC	2 cut(s)	422, 747
BspT107I	GGYRCC	1 cut(s)	840
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	23, 163
BsrI	ACTGG	3 cut(s)	199, 255, 638
BssECI	CCNNGG	4 cut(s)	74, 120, 256, 609
BssMI	GATC	3 cut(s)	321, 414, 739
BssNI	GRCGYC	1 cut(s)	692
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	4 cut(s)	121, 258, 610, 755
Bst4CI	ACNGT	2 cut(s)	277, 713
BstACI	GRCGYC	1 cut(s)	692
BstDEI	CTNAG	6 cut(s)	37, 307, 490, 639, 720, 785
BstEII	GGTNACC	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	501, 502
BstKTI	GATC	3 cut(s)	324, 417, 742
BstMAI	GTCTC	4 cut(s)	55, 854, 864, 870
BstMBI	GATC	3 cut(s)	321, 414, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	4 cut(s)	121, 258, 610, 755
BstPAI	GACNNNNGTC	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	4 cut(s)	119, 256, 608, 753
BstSFI	CTRYAG	1 cut(s)	661
BstV1I	GCAGC	3 cut(s)	77, 367, 671
BstV2I	GAAGAC	3 cut(s)	288, 373, 632
BstX2I	RGATCY	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	82, 228, 605, 656
BtsCI	GGATG	2 cut(s)	501, 502
BtsIMutI	CAGTG	1 cut(s)	825
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	253, 603, 757
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	6 cut(s)	92, 142, 192, 445, 709, 841
CviAII	CATG	1 cut(s)	565
CviQI	GTAC	6 cut(s)	92, 142, 192, 445, 709, 841
DdeI	CTNAG	6 cut(s)	37, 307, 490, 639, 720, 785
DpnI	GATC	3 cut(s)	323, 416, 741
DpnII	GATC	3 cut(s)	321, 414, 739
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	2 cut(s)	226, 654
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	253, 757
Eco88I	CYCGRG	1 cut(s)	620
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	757
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	4 cut(s)	119, 256, 608, 753
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	568
FaiI	YATR	9 cut(s)	47, 217, 237, 239, 566, 663, 675, 881, 883
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	564
FauNDI	CATATG	2 cut(s)	237, 881
Fnu4HI	GCNGC	3 cut(s)	66, 356, 685
FokI	GGATG	2 cut(s)	488, 509
Fsp4HI	GCNGC	3 cut(s)	66, 356, 685
FspBI	CTAG	3 cut(s)	579, 837, 846
GluI	GCNGC	3 cut(s)	66, 356, 685
HaeIII	GGCC	4 cut(s)	82, 228, 605, 656
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	681
Hin1I	GRCGYC	1 cut(s)	692
Hin1II	CATG	1 cut(s)	568
HinfI	GANTC	5 cut(s)	22, 163, 263, 469, 618
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	4 cut(s)	272, 376, 410, 799
Hpy166II	GTNNAC	1 cut(s)	807
Hpy188I	TCNGA	3 cut(s)	310, 512, 744
Hpy188III	TCNNGA	4 cut(s)	31, 466, 520, 622
Hpy8I	GTNNAC	1 cut(s)	807
Hpy99I	CGWCG	2 cut(s)	683, 697
HpyAV	CCTTC	2 cut(s)	658, 739
HpyCH4III	ACNGT	2 cut(s)	277, 713
HpyCH4V	TGCA	5 cut(s)	56, 241, 370, 825, 864
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	6 cut(s)	37, 307, 490, 639, 720, 785
Hsp92I	GRCGYC	1 cut(s)	692
Hsp92II	CATG	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	321, 414, 739
LmnI	GCTCC	3 cut(s)	73, 174, 649
Lsp1109I	GCAGC	3 cut(s)	77, 367, 671
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	3 cut(s)	579, 837, 846
MaeIII	GTNAC	3 cut(s)	260, 277, 398
MalI	GATC	3 cut(s)	323, 416, 741
MboI	GATC	3 cut(s)	321, 414, 739
MboII	GAAGA	5 cut(s)	114, 288, 373, 409, 637
MflI	RGATCY	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	315, 465
MlsI	TGGCCA	2 cut(s)	228, 656
MluCI	AATT	1 cut(s)	545
MluNI	TGGCCA	2 cut(s)	228, 656
MlyI	GAGTC	3 cut(s)	16, 257, 612
Mox20I	TGGCCA	2 cut(s)	228, 656
MroXI	GAANNNNTTC	1 cut(s)	749
MscI	TGGCCA	2 cut(s)	228, 656
Msp20I	TGGCCA	2 cut(s)	228, 656
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	4 cut(s)	121, 258, 610, 755
MvaI	CCWGG	4 cut(s)	121, 258, 610, 755
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeI	CATATG	2 cut(s)	237, 881
NdeII	GATC	3 cut(s)	321, 414, 739
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	3 cut(s)	255, 645, 842
NmuCI	GTSAC	2 cut(s)	260, 398
PaeR7I	CTCGAG	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 684
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	2 cut(s)	163, 469
PfoI	TCCNGGA	1 cut(s)	753
PkrI	GCNGC	3 cut(s)	67, 357, 686
PleI	GAGTC	3 cut(s)	16, 257, 612
PpsI	GAGTC	3 cut(s)	16, 257, 612
PpuMI	RGGWCCY	1 cut(s)	757
PshAI	GACNNNNGTC	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	4 cut(s)	119, 256, 608, 753
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	4 cut(s)	119, 256, 608, 753
PspN4I	GGNNCC	3 cut(s)	255, 645, 842
PspPI	GGNCC	3 cut(s)	253, 603, 757
PspPPI	RGGWCCY	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	414
RsaI	GTAC	6 cut(s)	93, 143, 193, 446, 710, 842
RsaNI	GTAC	6 cut(s)	92, 142, 192, 445, 709, 841
SatI	GCNGC	3 cut(s)	66, 356, 685
Sau3AI	GATC	3 cut(s)	321, 414, 739
Sau96I	GGNCC	3 cut(s)	253, 603, 757
ScaI	AGTACT	2 cut(s)	143, 710
SchI	GAGTC	3 cut(s)	16, 257, 612
ScrFI	CCNGG	4 cut(s)	121, 258, 610, 755
SduI	GDGCHC	2 cut(s)	315, 465
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	2 cut(s)	253, 757
SlaI	CTCGAG	1 cut(s)	620
SmlI	CTYRAG	2 cut(s)	31, 620
SmoI	CTYRAG	2 cut(s)	31, 620
Sse9I	AATT	1 cut(s)	545
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	857
SspMI	CTAG	3 cut(s)	579, 837, 846
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	4 cut(s)	119, 256, 608, 753
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	2 cut(s)	277, 713
TaqI	TCGA	6 cut(s)	324, 330, 429, 621, 678, 762
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	1 cut(s)	545
TatI	WGTACW	2 cut(s)	141, 708
TfiI	GAWTC	2 cut(s)	163, 469
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	2 cut(s)	260, 398
TseI	GCWGC	3 cut(s)	65, 355, 684
Tsp45I	GTSAC	2 cut(s)	260, 398
TspDTI	ATGAA	2 cut(s)	204, 581
TspRI	CASTG	1 cut(s)	832
VpaK11BI	GGWCC	2 cut(s)	253, 757
XapI	RAATTY	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	3 cut(s)	579, 837, 846
ZrmI	AGTACT	2 cut(s)	143, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.