Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Reverse (-)

22431332 .. 22434084

Gene Structure 2753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCAGATGAAATCAGACACTACAAAAGGACTTGCCCTCCCCCCTTTTTCCTCATCACACCTCAAGTATCTCTCTCTCTCTCTCTCTCTTCCTCACCCTCTGTGCTGGAGAGAAATGGCTTCTTACCAACAATGGACGCTGTTTGTGAGTTTGCTGTGTTTGGTCTCTGCAACAATGGGAGCTCCCCCAAGAAAGCCTATATCAGTGCCATTTGGCAGAAACTATCAGCCCACCTGGGCTTTTGATCACATCAAGTACTTCAATGGAGGCAATGAGATTCAGCTTCATCTGGACAAATACACAGGCACTGGCTTCCAATCAAAAGGAAACTACTTGTTTGGCCACTTCCATATGCAAATCAAGTTGGTTCCCGGTGACTCTGCCGGAACTGTCACTGCTTACTATCTATCTTCTCAAAACGCTGAGCACGATGAGATAGACTTTGAATTCCTGGGAAACAGGACAGGGCAGCCTTACATTTTGCAAACCAATGTGTTCACCGGAGGAAAAGGTGATAGAGAACAGAGGATTTTCCTCTGGTTCGACCCAACCGCAGCTTACCACTCCTACTCTGTCCTCTGGAATCTCTACCAGATTGTATTCTTCGTGGACGACATACCAATCAGGGTGTTCAAAAACAGCAAAGATTTGGGAGTGAAATTCCCGTTCAACCAACCCATGAAGCTGTACTCTAGCTTGTGGAACGCAGACGATTGGGCCACAAGGGGTGGGCTGGAAAAGACCGATTGGTCCAAGGCCCCTTTCATTGCCACGTACAAGGGCTTCCACATCGACGGCTGTGAGGCCTCGGTGGAGGCCAAATTCTGTGCCACGCAGGGCCAGAGATGGTGGGACCAGAAGGAGTTCCAGGACCTTGATGCTAATCAATGGAGGAGGCTCAAGTGGGTCCGCCAGAAATTCACCATCTACAACTACTGCACTGACAGAGTCAGATACCCCACCCTCCCACCCGAGTGCAAGAGAGACAGAGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

333

Amino Acids

38.57

Weight (kDa)

8.73

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	748
AciI	CCGC	2 cut(s)	552, 910
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	4 cut(s)	446, 659, 821, 917
AfaI	GTAC	3 cut(s)	257, 689, 776
AgsI	TTSAA	4 cut(s)	262, 446, 634, 670
AjnI	CCWGG	3 cut(s)	233, 450, 867
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AleI	CACNNNNGTG	1 cut(s)	973
AluBI	AGCT	5 cut(s)	182, 283, 557, 685, 696
AluI	AGCT	5 cut(s)	182, 283, 557, 685, 696
Alw21I	GWGCWC	2 cut(s)	184, 429
Alw26I	GTCTC	3 cut(s)	169, 978, 984
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	971
AoxI	GGCC	6 cut(s)	340, 717, 756, 804, 816, 838
ApeKI	GCWGC	2 cut(s)	469, 554
ApoI	RAATTY	4 cut(s)	446, 659, 821, 917
Asp700I	GAANNNNTTC	1 cut(s)	863
AspS9I	GGNCC	7 cut(s)	717, 750, 757, 838, 853, 871, 907
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	5 cut(s)	86, 386, 490, 524, 913
AvaI	CYCGRG	1 cut(s)	971
AvaII	GGWCC	4 cut(s)	750, 853, 871, 907
BalI	TGGCCA	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
Bbv12I	GWGCWC	2 cut(s)	184, 429
BbvI	GCAGC	2 cut(s)	481, 566
BccI	CCATC	2 cut(s)	840, 932
BceAI	ACGGC	1 cut(s)	811
BciT130I	CCWGG	3 cut(s)	235, 452, 869
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	3 cut(s)	169, 978, 984
BfaI	CTAG	1 cut(s)	693
BisI	GCNGC	2 cut(s)	470, 555
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	2 cut(s)	471, 556
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	4 cut(s)	235, 372, 452, 869
Bme18I	GGWCC	4 cut(s)	750, 853, 871, 907
BmeT110I	CYCGRG	1 cut(s)	971
BmgT120I	GGNCC	7 cut(s)	717, 750, 757, 838, 853, 871, 907
BmiI	GGNNCC	4 cut(s)	369, 759, 854, 908
BmrFI	CCNGG	4 cut(s)	235, 372, 452, 869
BmsI	GCATC	1 cut(s)	868
BpmI	CTGGAG	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	2 cut(s)	47, 884
BpuMI	CCSGG	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	774
BsaBI	GATNNNNATC	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	4 cut(s)	234, 451, 753, 807
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	2 cut(s)	277, 765
Bse8I	GATNNNNATC	1 cut(s)	882
BseBI	CCWGG	3 cut(s)	235, 452, 869
BseDI	CCNNGG	4 cut(s)	234, 451, 753, 807
BseJI	GATNNNNATC	1 cut(s)	882
BseMI	GCAATG	2 cut(s)	277, 765
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	907
BseXI	GCAGC	2 cut(s)	481, 566
BsgI	GTGCAG	1 cut(s)	922
BshFI	GGCC	6 cut(s)	342, 719, 758, 806, 818, 840
BsiHKAI	GWGCWC	2 cut(s)	184, 429
BsiHKCI	CYCGRG	1 cut(s)	971
BsiSI	CCGG	3 cut(s)	372, 384, 501
BslFI	GGGAC	1 cut(s)	866
BsmAI	GTCTC	3 cut(s)	169, 978, 984
BsmFI	GGGAC	1 cut(s)	866
BsnI	GGCC	6 cut(s)	342, 719, 758, 806, 818, 840
Bso31I	GGTCTC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	971
Bsp1286I	GDGCHC	2 cut(s)	184, 429
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	423
BspACI	CCGC	2 cut(s)	552, 910
BspANI	GGCC	6 cut(s)	342, 719, 758, 806, 818, 840
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	4 cut(s)	369, 759, 854, 908
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	277, 765
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	4 cut(s)	234, 451, 753, 807
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	3 cut(s)	235, 452, 869
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	774
BstDEI	CTNAG	1 cut(s)	423
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	3 cut(s)	169, 978, 984
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	3 cut(s)	235, 452, 869
BstSCI	CCNGG	4 cut(s)	233, 370, 450, 867
BstV1I	GCAGC	2 cut(s)	481, 566
BsuRI	GGCC	6 cut(s)	342, 719, 758, 806, 818, 840
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	4 cut(s)	210, 306, 393, 939
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	7 cut(s)	717, 750, 757, 838, 853, 871, 907
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	3 cut(s)	256, 688, 775
CviAII	CATG	1 cut(s)	679
CviQI	GTAC	3 cut(s)	256, 688, 775
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	899
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	753
Eco147I	AGGCCT	1 cut(s)	806
Eco24I	GRGCYC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	4 cut(s)	750, 853, 871, 907
Eco53kI	GAGCTC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	971
EcoICRI	GAGCTC	1 cut(s)	182
EcoO109I	RGGNCCY	2 cut(s)	757, 871
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	3 cut(s)	233, 450, 867
EcoT14I	CCWWGG	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	1 cut(s)	682
FaiI	YATR	7 cut(s)	200, 351, 353, 617, 680, 995, 997
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	1 cut(s)	678
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	470, 555
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	470, 555
FspBI	CTAG	1 cut(s)	693
GluI	GCNGC	2 cut(s)	470, 555
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	6 cut(s)	342, 719, 758, 806, 818, 840
HapII	CCGG	3 cut(s)	372, 384, 501
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	682
HinfI	GANTC	4 cut(s)	277, 377, 583, 948
HpaII	CCGG	3 cut(s)	372, 384, 501
HphI	GGTGA	5 cut(s)	86, 386, 490, 524, 913
Hpy166II	GTNNAC	2 cut(s)	498, 610
Hpy188I	TCNGA	2 cut(s)	16, 953
Hpy188III	TCNNGA	2 cut(s)	290, 580
Hpy8I	GTNNAC	2 cut(s)	498, 610
Hpy99I	CGWCG	1 cut(s)	797
HpyAV	CCTTC	1 cut(s)	853
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	6 cut(s)	4, 170, 355, 484, 939, 978
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	773
Hsp92II	CATG	1 cut(s)	682
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	179, 187
Lsp1109I	GCAGC	2 cut(s)	481, 566
LweI	GCATC	1 cut(s)	868
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	2 cut(s)	374, 391
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	80, 402, 595
MhlI	GDGCHC	2 cut(s)	184, 429
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	4 cut(s)	446, 659, 821, 917
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	371, 957
Mox20I	TGGCCA	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	863
MscI	TGGCCA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	973
Msp20I	TGGCCA	1 cut(s)	342
MspI	CCGG	3 cut(s)	372, 384, 501
MspR9I	CCNGG	4 cut(s)	235, 372, 452, 869
MvaI	CCWGG	3 cut(s)	235, 452, 869
NciI	CCSGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	682
NlaIV	GGNNCC	4 cut(s)	369, 759, 854, 908
NmuCI	GTSAC	2 cut(s)	374, 391
OliI	CACNNNNGTG	1 cut(s)	973
PceI	AGGCCT	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	2 cut(s)	277, 583
PflFI	GACNNNGTC	1 cut(s)	947
PfoI	TCCNGGA	1 cut(s)	867
PkrI	GCNGC	2 cut(s)	471, 556
PleI	GAGTC	2 cut(s)	371, 956
PpsI	GAGTC	2 cut(s)	371, 956
Ppu21I	YACGTR	1 cut(s)	774
PpuMI	RGGWCCY	1 cut(s)	871
Psp124BI	GAGCTC	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	871
Psp6I	CCWGG	3 cut(s)	233, 450, 867
PspGI	CCWGG	3 cut(s)	233, 450, 867
PspN4I	GGNNCC	4 cut(s)	369, 759, 854, 908
PspPI	GGNCC	7 cut(s)	717, 750, 757, 838, 853, 871, 907
PspPPI	RGGWCCY	1 cut(s)	871
PstNI	CAGNNNCTG	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	947
RsaI	GTAC	3 cut(s)	257, 689, 776
RsaNI	GTAC	3 cut(s)	256, 688, 775
RseI	CAYNNNNRTG	1 cut(s)	973
SacI	GAGCTC	1 cut(s)	184
SatI	GCNGC	2 cut(s)	470, 555
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	7 cut(s)	717, 750, 757, 838, 853, 871, 907
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	2 cut(s)	371, 957
ScrFI	CCNGG	4 cut(s)	235, 372, 452, 869
SduI	GDGCHC	2 cut(s)	184, 429
SfaNI	GCATC	1 cut(s)	868
SinI	GGWCC	4 cut(s)	750, 853, 871, 907
SmiMI	CAYNNNNRTG	1 cut(s)	973
SmlI	CTYRAG	2 cut(s)	62, 899
SmoI	CTYRAG	2 cut(s)	62, 899
Sse9I	AATT	4 cut(s)	446, 659, 821, 917
SseBI	AGGCCT	1 cut(s)	806
SsiI	CCGC	2 cut(s)	552, 910
SspMI	CTAG	1 cut(s)	693
SstI	GAGCTC	1 cut(s)	184
StuI	AGGCCT	1 cut(s)	806
StyD4I	CCNGG	4 cut(s)	233, 370, 450, 867
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	2 cut(s)	543, 792
TaqII	GACCGA	1 cut(s)	758
TasI	AATT	4 cut(s)	446, 659, 821, 917
TatI	WGTACW	2 cut(s)	255, 687
TfiI	GAWTC	2 cut(s)	277, 583
TscAI	CASTG	4 cut(s)	210, 313, 400, 946
TseFI	GTSAC	2 cut(s)	374, 391
TseI	GCWGC	2 cut(s)	469, 554
Tsp45I	GTSAC	2 cut(s)	374, 391
TspDTI	ATGAA	4 cut(s)	23, 275, 695, 754
TspRI	CASTG	4 cut(s)	210, 313, 400, 946
Tth111I	GACNNNGTC	1 cut(s)	947
VpaK11BI	GGWCC	4 cut(s)	750, 853, 871, 907
XapI	RAATTY	4 cut(s)	446, 659, 821, 917
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	1 cut(s)	693
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.