Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Forward (+)

8128856 .. 8131144

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTTCTTGCAAACAATGGATTGTGTTTTTGAGTTTGCTGTGTTTGGCCTCTGCAACAATGGCAGCTCCCCTGAAAACGCCGGTTGCGGTGCCGTTCGGCAGAAACTACATGCCCACTTGGGCATTTGATCACATCAAGTACTTCAATGGAGGCAATGAGATCCAGTTGCATCTCGACAAGTACACAGGTACTGGCTTCCAATCGAAAGGAAATTACCTGTTCGGCCACTTCCATATGCAAATTAAGATGGTTCCTGGGGACTCTGCTGGAACTGTTACTGCTTTCTATCTGTCTTCGCAAAACAGCGAGCACGATGAGATCGATTTCGAGTTCTTGGGGAACAGGACAGGGCAGCCCTACATTCTGCAGACCAATGTGTTCACAGGAGGAAAGGGGGATAGAGAGCAGAGGATTTTCCTCTGGTTCGACCCCACTGCAGCTTACCACTCCTACGCTGTCCTCTGGAATCTCTACCAGATTGTATTCCTCGTGGACGACGTACCAATCAGGGTGTTCAAAAACTGCAAAGATTTGGGTGTGAAATTCCCATTTAACCAGCCCATGAAGCTCTACTCCAGCTTGTGGAACGCAGACGACTGGGCCACCAGGGGTGGGCTGGAAAAGACCGATTGGTCCAAGGCCCCGTTCATCGCCACGTACCGGAGCTTCCACATCGACGGCTGCGAGGCCTCCGTCAACGCCAGATTCTGTGACACACAGGGTAAGAGATGGTGGGACCAGAGGGAGTTCCAAGACCTTGATGCTCAGCAATGGAGGAGGCTGCGGTGGGTCCGCCAGAAATACACCATCTACAACTACTGCACTGACCGAGTCCGATACCCTACTATGCCACCAGAGTGCCAGAGGGACAGAGACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

295

Amino Acids

34.33

Weight (kDa)

8.38

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	634
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	585
AciI	CCGC	3 cut(s)	89, 787, 796
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	545
AfaI	GTAC	5 cut(s)	143, 185, 193, 504, 662
AfiI	CCNNNNNNNGG	3 cut(s)	585, 615, 663
AgsI	TTSAA	2 cut(s)	148, 520
AjnI	CCWGG	2 cut(s)	256, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AleI	CACNNNNGTG	1 cut(s)	859
AluBI	AGCT	5 cut(s)	68, 443, 571, 582, 669
AluI	AGCT	5 cut(s)	68, 443, 571, 582, 669
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	2 cut(s)	194, 711
AoxI	GGCC	5 cut(s)	48, 226, 603, 642, 690
ApeKI	GCWGC	5 cut(s)	65, 355, 440, 684, 784
ApoI	RAATTY	1 cut(s)	545
AspS9I	GGNCC	5 cut(s)	603, 636, 643, 739, 793
AvaII	GGWCC	3 cut(s)	636, 739, 793
BanI	GGYRCC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	653, 685
BauI	CACGAG	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	5 cut(s)	77, 367, 452, 671, 771
BccI	CCATC	3 cut(s)	244, 726, 818
BceAI	ACGGC	2 cut(s)	79, 697
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	258, 610
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	870
BfmI	CTRYAG	2 cut(s)	368, 438
BisI	GCNGC	5 cut(s)	66, 356, 441, 685, 785
BlpI	GCTNAGC	1 cut(s)	768
BlsI	GCNGC	5 cut(s)	67, 357, 442, 686, 786
BmcAI	AGTACT	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	258, 610
Bme18I	GGWCC	3 cut(s)	636, 739, 793
BmgT120I	GGNCC	5 cut(s)	603, 636, 643, 739, 793
BmiI	GGNNCC	5 cut(s)	93, 255, 645, 740, 794
BmrFI	CCNGG	2 cut(s)	258, 610
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	2 cut(s)	181, 754
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	562
Bpu1102I	GCTNAGC	1 cut(s)	768
Bsa29I	ATCGAT	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	660
BsaJI	CCNNGG	3 cut(s)	257, 609, 639
BsaWI	WCCGGW	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	3 cut(s)	585, 615, 663
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	166, 199, 605
Bse3DI	GCAATG	2 cut(s)	163, 779
BseBI	CCWGG	2 cut(s)	258, 610
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	257, 609, 639
BseLI	CCNNNNNNNGG	3 cut(s)	585, 615, 663
BseMI	GCAATG	2 cut(s)	163, 779
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	3 cut(s)	166, 199, 605
BseRI	GAGGAG	1 cut(s)	793
BseXI	GCAGC	5 cut(s)	77, 367, 452, 671, 771
BsgI	GTGCAG	1 cut(s)	808
BshFI	GGCC	5 cut(s)	50, 228, 605, 644, 692
BshNI	GGYRCC	1 cut(s)	91
BshVI	ATCGAT	1 cut(s)	324
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	2 cut(s)	83, 664
BslFI	GGGAC	2 cut(s)	275, 752
BslI	CCNNNNNNNGG	3 cut(s)	585, 615, 663
BsmAI	GTCTC	1 cut(s)	870
BsmBI	CGTCTC	1 cut(s)	870
BsmFI	GGGAC	2 cut(s)	275, 752
BsnI	GGCC	5 cut(s)	50, 228, 605, 644, 692
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	130, 162, 321
Bsp1720I	GCTNAGC	1 cut(s)	768
BspACI	CCGC	3 cut(s)	89, 787, 796
BspANI	GGCC	5 cut(s)	50, 228, 605, 644, 692
BspCNI	CTCAG	1 cut(s)	781
BspDI	ATCGAT	1 cut(s)	324
BspLI	GGNNCC	5 cut(s)	93, 255, 645, 740, 794
BspMAI	CTGCAG	2 cut(s)	372, 442
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	163, 779
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	3 cut(s)	166, 199, 605
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	257, 609, 639
BssMI	GATC	3 cut(s)	130, 162, 321
BssSI	CACGAG	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	639
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	2 cut(s)	258, 610
Bst4CI	ACNGT	1 cut(s)	277
BstBAI	YACGTR	1 cut(s)	660
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	768
BstKTI	GATC	3 cut(s)	133, 165, 324
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	3 cut(s)	130, 162, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 568
BstNI	CCWGG	2 cut(s)	258, 610
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	256, 608
BstSFI	CTRYAG	2 cut(s)	368, 438
BstV1I	GCAGC	5 cut(s)	77, 367, 452, 671, 771
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	50, 228, 605, 644, 692
BsuTUI	ATCGAT	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	435, 825
Cac8I	GCNNGC	1 cut(s)	311
CaiI	CAGNNNCTG	2 cut(s)	194, 711
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	5 cut(s)	603, 636, 643, 739, 793
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	5 cut(s)	142, 184, 192, 503, 661
CviAII	CATG	2 cut(s)	112, 565
CviQI	GTAC	5 cut(s)	142, 184, 192, 503, 661
DdeI	CTNAG	1 cut(s)	768
DpnI	GATC	3 cut(s)	132, 164, 323
DpnII	GATC	3 cut(s)	130, 162, 321
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	785
Eco130I	CCWWGG	1 cut(s)	639
Eco147I	AGGCCT	1 cut(s)	692
Eco47I	GGWCC	3 cut(s)	636, 739, 793
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	2 cut(s)	256, 608
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	870
FaeI	CATG	2 cut(s)	115, 568
FaiI	YATR	6 cut(s)	113, 237, 239, 566, 851, 883
FaqI	GGGAC	2 cut(s)	275, 752
FatI	CATG	2 cut(s)	111, 564
FauNDI	CATATG	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	5 cut(s)	66, 356, 441, 685, 785
Fsp4HI	GCNGC	5 cut(s)	66, 356, 441, 685, 785
GluI	GCNGC	5 cut(s)	66, 356, 441, 685, 785
GsuI	CTGGAG	1 cut(s)	562
HaeIII	GGCC	5 cut(s)	50, 228, 605, 644, 692
HapII	CCGG	2 cut(s)	83, 664
Hin1II	CATG	2 cut(s)	115, 568
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	4 cut(s)	263, 469, 708, 834
HpaII	CCGG	2 cut(s)	83, 664
Hpy166II	GTNNAC	4 cut(s)	186, 384, 496, 700
Hpy188I	TCNGA	1 cut(s)	839
Hpy188III	TCNNGA	2 cut(s)	176, 466
Hpy8I	GTNNAC	4 cut(s)	186, 384, 496, 700
Hpy99I	CGWCG	2 cut(s)	503, 683
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	3 cut(s)	501, 659, 879
HpyCH4V	TGCA	8 cut(s)	12, 56, 172, 241, 370, 440, 528, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 568
HpyF3I	CTNAG	1 cut(s)	768
HpySE526I	ACGT	3 cut(s)	501, 659, 879
Hsp92II	CATG	2 cut(s)	115, 568
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 162, 321
LmnI	GCTCC	2 cut(s)	73, 666
Lsp1109I	GCAGC	5 cut(s)	77, 367, 452, 671, 771
LweI	GCATC	2 cut(s)	181, 754
MaeII	ACGT	3 cut(s)	501, 659, 879
MaeIII	GTNAC	2 cut(s)	277, 713
MalI	GATC	3 cut(s)	132, 164, 323
MboI	GATC	3 cut(s)	130, 162, 321
MboII	GAAGA	1 cut(s)	288
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	3 cut(s)	214, 243, 545
MlyI	GAGTC	2 cut(s)	257, 843
MseI	TTAA	2 cut(s)	246, 555
MslI	CAYNNNNRTG	1 cut(s)	859
MspI	CCGG	2 cut(s)	83, 664
MspR9I	CCNGG	2 cut(s)	258, 610
MvaI	CCWGG	2 cut(s)	258, 610
MwoI	GCNNNNNNNGC	2 cut(s)	62, 568
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	3 cut(s)	130, 162, 321
NlaIII	CATG	2 cut(s)	115, 568
NlaIV	GGNNCC	5 cut(s)	93, 255, 645, 740, 794
NmuCI	GTSAC	1 cut(s)	713
NspI	RCATGY	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	3 cut(s)	321, 498, 684
PfeI	GAWTC	2 cut(s)	469, 708
PflFI	GACNNNGTC	1 cut(s)	833
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	5 cut(s)	67, 357, 442, 686, 786
PleI	GAGTC	2 cut(s)	257, 842
PpsI	GAGTC	2 cut(s)	257, 842
Ppu21I	YACGTR	1 cut(s)	660
Psp6I	CCWGG	2 cut(s)	256, 608
PspGI	CCWGG	2 cut(s)	256, 608
PspN4I	GGNNCC	5 cut(s)	93, 255, 645, 740, 794
PspPI	GGNCC	5 cut(s)	603, 636, 643, 739, 793
PstI	CTGCAG	2 cut(s)	372, 442
PstNI	CAGNNNCTG	2 cut(s)	194, 711
PsuI	RGATCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	833
RsaI	GTAC	5 cut(s)	143, 185, 193, 504, 662
RsaNI	GTAC	5 cut(s)	142, 184, 192, 503, 661
RseI	CAYNNNNRTG	1 cut(s)	859
SaqAI	TTAA	2 cut(s)	246, 555
SatI	GCNGC	5 cut(s)	66, 356, 441, 685, 785
Sau3AI	GATC	3 cut(s)	130, 162, 321
Sau96I	GGNCC	5 cut(s)	603, 636, 643, 739, 793
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	2 cut(s)	257, 843
ScrFI	CCNGG	2 cut(s)	258, 610
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	181, 754
SfcI	CTRYAG	2 cut(s)	368, 438
SinI	GGWCC	3 cut(s)	636, 739, 793
SmiMI	CAYNNNNRTG	1 cut(s)	859
Sse9I	AATT	3 cut(s)	214, 243, 545
SseBI	AGGCCT	1 cut(s)	692
SsiI	CCGC	3 cut(s)	89, 787, 796
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	2 cut(s)	256, 608
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	3 cut(s)	504, 662, 882
TaqI	TCGA	6 cut(s)	177, 206, 324, 330, 429, 678
TaqII	GACCGA	2 cut(s)	644, 846
TasI	AATT	3 cut(s)	214, 243, 545
TatI	WGTACW	2 cut(s)	141, 183
TfiI	GAWTC	2 cut(s)	469, 708
Tru1I	TTAA	2 cut(s)	246, 555
Tru9I	TTAA	2 cut(s)	246, 555
TscAI	CASTG	2 cut(s)	442, 832
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	5 cut(s)	65, 355, 440, 684, 784
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	2 cut(s)	581, 640
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	2 cut(s)	442, 832
Tth111I	GACNNNGTC	1 cut(s)	833
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	3 cut(s)	636, 739, 793
XapI	RAATTY	1 cut(s)	545
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.