Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007019.1

Orthogroup ID

OG0009801

Physical Location & Seq

Genomic Coordinates Reverse (-)

43232 .. 46963

Gene Structure 3732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007019.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgcggggaaaacccgccggtaccccgcccccgcccacttgcccattcttaggtggaactggatttgggacctcccctccttcccatttcctcatcacaactcaaagtctcaaaccactctctcactctatctgtgttgcacagagaaaaatggcttcttacaagcaatggactctgctcttgagcttagtgcttatggtctctgcaacaatggcagctcccccaaggaggcctgtggctgtaccctttggaagaaactaccagcccacctgggcttttgaccacattaagtactacaacggtggcaatgagattcagctccaccttgacaaatacacaggtactggtttccaatccaaaggttcatacttgtttggtcatttccatatgcaaatcaaactggtccctggtgactctgctggaactgttactgctttctatctgtcttctacaaactcagagcacgatgagatcgacttcgagttcttggggaacagaacagggcagccctacattttgcagactaatgtcttcactggaggaaagggtgaccgagaacagaggatcttcctctggttcgacccaaccaaagagtaccactcctactctgtgctctggaatctctaccagattgtattcttagtggatgacatcccaatccgagtgttcaagaacagcaaagacttgggagtgaaattcccattcaaccaacccatgaagctctactctagtctgtggaacgcagacgattgggccaccaggggaggactcgagaagactgactggtctaaggctcccttcgtggccacctataggggcttccatatcgacggctgcgaggcgtcggtggaagccaagtactgtgccactcagggtaagaggtggtgggatcagaaggagttccaggacctcgatgcttatcaatggaggaggctgaggtgggttagacagaggttcaccatctacaactactgcactgacaggactaggtaccctagtctccctgcggagtgcaagagagacagagacatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009612 GO:0009628 GO:0009642 GO:0009645 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009826 GO:0009987 GO:0010033 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030054 GO:0030312 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0055044 GO:0060560 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

344

Amino Acids

39.62

Weight (kDa)

9.21

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06850 AT2G06850 AT5G13870 AT5G13870 AT5G13870
fragaria_vesca	FvH4_4g22090
malus_domestica	MD13G1134600.v1.1 MD16G1145200.v1.1
prunus_persica	Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1 Prupe.1G210900_v2.0.a1
pyrus_communis	pycom13g11740 pycom16g11480
rosa_chinensis	RchiOBHm_Chr4g0428351
rosa_laevigata	RLG00000007162
rosa_multiflora	Rmu_sc0007019.1_g000007
rosa_roxburghii	Rroxscaffold_5G00369980
rosa_rugosa	Rorug04G0224900
rosa_samantha	Rh4AG281700 Rh4BG287300
rosa_wichuraiana	Rw4G024460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	784
Acc65I	GGTACC	2 cut(s)	20, 990
AccB1I	GGYRCC	2 cut(s)	20, 990
AciI	CCGC	5 cut(s)	4, 15, 26, 32, 1007
AclWI	GGATC	2 cut(s)	572, 897
AcoI	YGGCCR	1 cut(s)	804
AcsI	RAATTY	1 cut(s)	695
AcyI	GRCGYC	1 cut(s)	842
AfaI	GTAC	7 cut(s)	22, 243, 293, 343, 596, 860, 992
AfiI	CCNNNNNNNGG	3 cut(s)	50, 228, 813
AgsI	TTSAA	2 cut(s)	670, 706
AjnI	CCWGG	4 cut(s)	269, 406, 758, 903
AluBI	AGCT	4 cut(s)	186, 218, 319, 721
AluI	AGCT	4 cut(s)	186, 218, 319, 721
Alw21I	GWGCWC	2 cut(s)	465, 615
Alw26I	GTCTC	5 cut(s)	113, 205, 1004, 1014, 1020
AlwI	GGATC	2 cut(s)	572, 897
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	770
AoxI	GGCC	3 cut(s)	230, 753, 804
ApeKI	GCWGC	3 cut(s)	215, 505, 834
ApoI	RAATTY	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	899
Asp718I	GGTACC	2 cut(s)	20, 990
AspS9I	GGNCC	4 cut(s)	69, 403, 753, 907
AsuHPI	GGTGA	3 cut(s)	422, 560, 949
AvaI	CYCGRG	1 cut(s)	770
AvaII	GGWCC	3 cut(s)	69, 403, 907
BaeI	ACNNNNGTAYC	2 cut(s)	982, 1015
BalI	TGGCCA	1 cut(s)	806
BanI	GGYRCC	2 cut(s)	20, 990
BbsI	GAAGAC	3 cut(s)	438, 523, 782
Bbv12I	GWGCWC	2 cut(s)	465, 615
BbvCI	CCTCAGC	1 cut(s)	935
BbvI	GCAGC	3 cut(s)	227, 517, 821
BccI	CCATC	1 cut(s)	968
BceAI	ACGGC	1 cut(s)	847
BciT130I	CCWGG	4 cut(s)	271, 408, 760, 905
BcoDI	GTCTC	5 cut(s)	113, 205, 1004, 1014, 1020
BfaI	CTAG	3 cut(s)	729, 987, 996
BfmI	CTRYAG	1 cut(s)	811
BisI	GCNGC	3 cut(s)	216, 506, 835
BlsI	GCNGC	3 cut(s)	217, 507, 836
BmcAI	AGTACT	2 cut(s)	293, 860
Bme1390I	CCNGG	4 cut(s)	271, 408, 760, 905
Bme18I	GGWCC	3 cut(s)	69, 403, 907
BmeT110I	CYCGRG	1 cut(s)	770
BmgT120I	GGNCC	4 cut(s)	69, 403, 753, 907
BmiI	GGNNCC	5 cut(s)	22, 70, 405, 795, 992
BmrFI	CCNGG	4 cut(s)	271, 408, 760, 905
BmsI	GCATC	1 cut(s)	904
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	3 cut(s)	438, 523, 782
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	935
BpuEI	CTTGAG	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	4 cut(s)	224, 270, 406, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 228, 813
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	5 cut(s)	64, 349, 405, 541, 788
Bse3DI	GCAATG	2 cut(s)	173, 313
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	4 cut(s)	271, 408, 760, 905
BseDI	CCNNGG	4 cut(s)	224, 270, 406, 759
BseGI	GGATG	2 cut(s)	651, 652
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	3 cut(s)	50, 228, 813
BseMI	GCAATG	2 cut(s)	173, 313
BseMII	CTCAG	3 cut(s)	471, 884, 926
BseNI	ACTGG	5 cut(s)	64, 349, 405, 541, 788
BseRI	GAGGAG	1 cut(s)	943
BseXI	GCAGC	3 cut(s)	227, 517, 821
BsgI	GTGCAG	1 cut(s)	958
BshFI	GGCC	3 cut(s)	232, 755, 806
BshNI	GGYRCC	2 cut(s)	20, 990
BsiHKAI	GWGCWC	2 cut(s)	465, 615
BsiHKCI	CYCGRG	1 cut(s)	770
BsiSI	CCGG	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	82, 389
BslI	CCNNNNNNNGG	3 cut(s)	50, 228, 813
BsmAI	GTCTC	5 cut(s)	113, 205, 1004, 1014, 1020
BsmFI	GGGAC	2 cut(s)	82, 389
BsnI	GGCC	3 cut(s)	232, 755, 806
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	465, 615
Bsp143I	GATC	3 cut(s)	471, 564, 889
BspACI	CCGC	5 cut(s)	4, 15, 26, 32, 1007
BspANI	GGCC	3 cut(s)	232, 755, 806
BspCNI	CTCAG	3 cut(s)	470, 883, 927
BspLI	GGNNCC	5 cut(s)	22, 70, 405, 795, 992
BspPI	GGATC	2 cut(s)	572, 897
BspT107I	GGYRCC	2 cut(s)	20, 990
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	173, 313
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	5 cut(s)	64, 349, 405, 541, 788
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	4 cut(s)	224, 270, 406, 759
BssMI	GATC	3 cut(s)	471, 564, 889
BssNI	GRCGYC	1 cut(s)	842
BssT1I	CCWWGG	1 cut(s)	224
Bst2UI	CCWGG	4 cut(s)	271, 408, 760, 905
Bst4CI	ACNGT	3 cut(s)	302, 427, 863
BstACI	GRCGYC	1 cut(s)	842
BstDEI	CTNAG	7 cut(s)	49, 187, 457, 640, 789, 870, 935
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	651, 652
BstKTI	GATC	3 cut(s)	474, 567, 892
BstMAI	GTCTC	5 cut(s)	113, 205, 1004, 1014, 1020
BstMBI	GATC	3 cut(s)	471, 564, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	4 cut(s)	271, 408, 760, 905
BstPAI	GACNNNNGTC	1 cut(s)	527
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	4 cut(s)	269, 406, 758, 903
BstSFI	CTRYAG	1 cut(s)	811
BstV1I	GCAGC	3 cut(s)	227, 517, 821
BstV2I	GAAGAC	3 cut(s)	438, 523, 782
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BsuRI	GGCC	3 cut(s)	232, 755, 806
BtsCI	GGATG	2 cut(s)	651, 652
BtsIMutI	CAGTG	2 cut(s)	534, 975
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	4 cut(s)	69, 403, 753, 907
CseI	GACGC	1 cut(s)	831
Csp6I	GTAC	7 cut(s)	21, 242, 292, 342, 595, 859, 991
CviAII	CATG	1 cut(s)	715
CviQI	GTAC	7 cut(s)	21, 242, 292, 342, 595, 859, 991
DdeI	CTNAG	7 cut(s)	49, 187, 457, 640, 789, 870, 935
DpnI	GATC	3 cut(s)	473, 566, 891
DpnII	GATC	3 cut(s)	471, 564, 889
DrdI	GACNNNNNNGTC	1 cut(s)	784
DseDI	GACNNNNNNGTC	1 cut(s)	784
EaeI	YGGCCR	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	69, 403, 907
Eco88I	CYCGRG	1 cut(s)	770
Eco91I	GGTNACC	1 cut(s)	548
EcoO109I	RGGNCCY	2 cut(s)	69, 907
EcoO65I	GGTNACC	1 cut(s)	548
EcoRII	CCWGG	4 cut(s)	269, 406, 758, 903
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	718
FaiI	YATR	9 cut(s)	197, 367, 387, 389, 716, 813, 825, 1031, 1033
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FaqI	GGGAC	2 cut(s)	82, 389
FatI	CATG	1 cut(s)	714
FauI	CCCGC	3 cut(s)	22, 33, 39
FauNDI	CATATG	2 cut(s)	387, 1031
Fnu4HI	GCNGC	3 cut(s)	216, 506, 835
FokI	GGATG	2 cut(s)	638, 659
Fsp4HI	GCNGC	3 cut(s)	216, 506, 835
FspBI	CTAG	3 cut(s)	729, 987, 996
GluI	GCNGC	3 cut(s)	216, 506, 835
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	3 cut(s)	232, 755, 806
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	831
Hin1I	GRCGYC	1 cut(s)	842
Hin1II	CATG	1 cut(s)	718
HinfI	GANTC	5 cut(s)	172, 313, 413, 619, 768
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	3 cut(s)	422, 560, 949
Hpy166II	GTNNAC	1 cut(s)	957
Hpy188I	TCNGA	3 cut(s)	460, 662, 894
Hpy188III	TCNNGA	4 cut(s)	181, 616, 670, 772
Hpy8I	GTNNAC	1 cut(s)	957
Hpy99I	CGWCG	2 cut(s)	833, 847
HpyAV	CCTTC	3 cut(s)	90, 808, 889
HpyCH4III	ACNGT	3 cut(s)	302, 427, 863
HpyCH4V	TGCA	6 cut(s)	140, 206, 391, 520, 975, 1014
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	7 cut(s)	49, 187, 457, 640, 789, 870, 935
Hsp92I	GRCGYC	1 cut(s)	842
Hsp92II	CATG	1 cut(s)	718
KpnI	GGTACC	2 cut(s)	24, 994
Kzo9I	GATC	3 cut(s)	471, 564, 889
LmnI	GCTCC	3 cut(s)	223, 324, 799
Lsp1109I	GCAGC	3 cut(s)	227, 517, 821
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	3 cut(s)	729, 987, 996
MaeIII	GTNAC	3 cut(s)	410, 427, 548
MalI	GATC	3 cut(s)	473, 566, 891
MboI	GATC	3 cut(s)	471, 564, 889
MboII	GAAGA	5 cut(s)	264, 438, 523, 559, 787
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	2 cut(s)	465, 615
MlsI	TGGCCA	1 cut(s)	806
MluCI	AATT	1 cut(s)	695
MluNI	TGGCCA	1 cut(s)	806
MlyI	GAGTC	3 cut(s)	166, 407, 762
Mox20I	TGGCCA	1 cut(s)	806
MroXI	GAANNNNTTC	1 cut(s)	899
MscI	TGGCCA	1 cut(s)	806
MseI	TTAA	1 cut(s)	288
Msp20I	TGGCCA	1 cut(s)	806
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	4 cut(s)	271, 408, 760, 905
MvaI	CCWGG	4 cut(s)	271, 408, 760, 905
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeI	CATATG	2 cut(s)	387, 1031
NdeII	GATC	3 cut(s)	471, 564, 889
NlaIII	CATG	1 cut(s)	718
NlaIV	GGNNCC	5 cut(s)	22, 70, 405, 795, 992
NmuCI	GTSAC	2 cut(s)	410, 548
PaeR7I	CTCGAG	1 cut(s)	770
PceI	AGGCCT	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	2 cut(s)	471, 834
PdmI	GAANNNNTTC	1 cut(s)	899
PfeI	GAWTC	2 cut(s)	313, 619
PfoI	TCCNGGA	1 cut(s)	903
PkrI	GCNGC	3 cut(s)	217, 507, 836
PleI	GAGTC	3 cut(s)	166, 407, 762
PpsI	GAGTC	3 cut(s)	166, 407, 762
PpuMI	RGGWCCY	2 cut(s)	69, 907
PshAI	GACNNNNGTC	1 cut(s)	527
Psp5II	RGGWCCY	2 cut(s)	69, 907
Psp6I	CCWGG	4 cut(s)	269, 406, 758, 903
PspEI	GGTNACC	1 cut(s)	548
PspGI	CCWGG	4 cut(s)	269, 406, 758, 903
PspN4I	GGNNCC	5 cut(s)	22, 70, 405, 795, 992
PspPI	GGNCC	4 cut(s)	69, 403, 753, 907
PspPPI	RGGWCCY	2 cut(s)	69, 907
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	7 cut(s)	22, 243, 293, 343, 596, 860, 992
RsaNI	GTAC	7 cut(s)	21, 242, 292, 342, 595, 859, 991
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	216, 506, 835
Sau3AI	GATC	3 cut(s)	471, 564, 889
Sau96I	GGNCC	4 cut(s)	69, 403, 753, 907
ScaI	AGTACT	2 cut(s)	293, 860
SchI	GAGTC	3 cut(s)	166, 407, 762
ScrFI	CCNGG	4 cut(s)	271, 408, 760, 905
SduI	GDGCHC	2 cut(s)	465, 615
SfaNI	GCATC	1 cut(s)	904
SfcI	CTRYAG	1 cut(s)	811
Sfr274I	CTCGAG	1 cut(s)	770
SinI	GGWCC	3 cut(s)	69, 403, 907
SlaI	CTCGAG	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	181, 770
SmoI	CTYRAG	2 cut(s)	181, 770
Sse9I	AATT	1 cut(s)	695
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	5 cut(s)	4, 15, 26, 32, 1007
SspMI	CTAG	3 cut(s)	729, 987, 996
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	4 cut(s)	269, 406, 758, 903
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	302, 427, 863
TaqI	TCGA	6 cut(s)	474, 480, 579, 771, 828, 912
TaqII	GACCGA	1 cut(s)	567
TasI	AATT	1 cut(s)	695
TatI	WGTACW	2 cut(s)	291, 858
TfiI	GAWTC	2 cut(s)	313, 619
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	541, 982
TseFI	GTSAC	2 cut(s)	410, 548
TseI	GCWGC	3 cut(s)	215, 505, 834
Tsp45I	GTSAC	2 cut(s)	410, 548
TspDTI	ATGAA	2 cut(s)	354, 731
TspRI	CASTG	2 cut(s)	541, 982
VpaK11BI	GGWCC	3 cut(s)	69, 403, 907
XapI	RAATTY	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	770
XmnI	GAANNNNTTC	1 cut(s)	899
XspI	CTAG	3 cut(s)	729, 987, 996
ZrmI	AGTACT	2 cut(s)	293, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.