AT2G10553

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005393
Physical Location & Seq
Reverse (-)
4100335 .. 4101084
750 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G10553.1

Sequence Viewer

Length: 249 bp
ATGCGGGCGTTTAAGTTTGCTTTAGTTGAGGTTGTAAAAGATCTTTTAAAACCAGCTTGGAAAGAAGGTAAGCTTAACAAAGATGGTTACAAAAACATAGTGAAGAAGGTAGCTGAGAAAGTGACTGGTACAATGCAAAGTGGAAACGTTCCTCAAACACAGGAGAAGATTGACCATTATCTATCCGCTTCGAAACCAAAGCTTACCAAGCTCGTTCAGGCATACGTCGGCAAAATCAAGAAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

82

Amino Acids

9.23

Weight (kDa)

10.0

Isoelectric Point (pI)

12.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 8 - 62 1e-07 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 4, 186
AclI AACGTT 1 cut(s) 147
AfaI GTAC 1 cut(s) 130
AluBI AGCT 5 cut(s) 56, 73, 113, 202, 211
AluI AGCT 5 cut(s) 56, 73, 113, 202, 211
AsuII TTCGAA 1 cut(s) 191
BccI CCATC 1 cut(s) 77
BglII AGATCT 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 130
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 4, 186
BspCNI CTCAG 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 191
BsrI ACTGG 1 cut(s) 130
BssMI GATC 1 cut(s) 40
BstBI TTCGAA 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 129
CviJI RGCY 5 cut(s) 56, 73, 113, 202, 211
CviKI_1 RGCY 5 cut(s) 56, 73, 113, 202, 211
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DraI TTTAAA 1 cut(s) 48
FaiI YATR 2 cut(s) 98, 223
FalI AAGNNNNNCTT 2 cut(s) 57, 89
HindIII AAGCTT 2 cut(s) 71, 200
Hpy188III TCNNGA 1 cut(s) 238
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 59, 100
HpyCH4IV ACGT 2 cut(s) 147, 225
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 147, 225
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 66, 111, 146, 203
MaeII ACGT 2 cut(s) 147, 225
MaeIII GTNAC 2 cut(s) 86, 121
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 2 cut(s) 115, 178
MflI RGATCY 1 cut(s) 40
MnlI CCTC 2 cut(s) 22, 162
MseI TTAA 3 cut(s) 12, 47, 75
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 121
NspV TTCGAA 1 cut(s) 191
Psp1406I AACGTT 1 cut(s) 147
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 3 cut(s) 12, 47, 75
Sau3AI GATC 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 191
SgeI CNNG 8 cut(s) 17, 65, 69, 138, 173, 220, 224, 230
SsiI CCGC 2 cut(s) 4, 186
TaiI ACGT 2 cut(s) 150, 228
TaqI TCGA 1 cut(s) 191
Tru1I TTAA 3 cut(s) 12, 47, 75
Tru9I TTAA 3 cut(s) 12, 47, 75
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.