Rorug02G0228400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005393
Physical Location & Seq
Reverse (-)
22649226 .. 22651001
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0228400.1

Sequence Viewer

Length: 573 bp
ATGAATTCTGCAGATCCTAGATTACTACATGGTGACGTCTCCTTTTTTGTGCATATATATGATGCAAGTTATCATGATTTTGTTGGCATCATCATCCTACTTATTATTAATTCTACCATCAGTTTTATAGAGGAAAACAATGCAGGCAATGCTGCTGCTGCTCTTATGGCTCAGTCGGCCCCAAAAGCGAAGGTTTTACGTGACAGAAAATGGACAGAAAAAGATGCGGCTAGATTGGTTCCTGGAGACATAATTAGCATCAAACTTGGTGATATCGTTCTATCTGGTGCACGCCTTCTTGAAGGTGATCCTTTAAAGATTGATCAGCTTTTAACATCAATTGGATACTTTTGCATCTATTCAATTGTTGTTGGAATGTTTATTGGAATACCAGTTGGAATTCAGAGGAGGGAGAGTGGTGGTGCTGCTGCTGTTATTGCAAACCTACTCGTCATCCTAATTGGTGGGATCCCTATTGCTATGCCAACTGTTCTTTCCATTATGATGACCAGTGGTTCACATCGCTTGTCTCAGCCGGAACATGAGCTAATCTTGAGTCTCGAGTCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

190

Amino Acids

20.35

Weight (kDa)

5.67

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1-E2_ATPase PF00122 59 - 109 2.3e-08 P-type ATPase actuator domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AciI CCGC 1 cut(s) 227
AclWI GGATC 4 cut(s) 8, 302, 463, 476
AcsI RAATTY 2 cut(s) 4, 399
AcyI GRCGYC 1 cut(s) 36
AgsI TTSAA 2 cut(s) 302, 363
AjnI CCWGG 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 2 cut(s) 328, 547
AluI AGCT 2 cut(s) 328, 547
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 4 cut(s) 43, 240, 534, 563
Alw44I GTGCAC 1 cut(s) 288
AlwI GGATC 4 cut(s) 8, 302, 463, 476
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 1 cut(s) 177
ApaLI GTGCAC 1 cut(s) 288
ApeKI GCWGC 5 cut(s) 152, 155, 158, 425, 428
ApoI RAATTY 2 cut(s) 4, 399
AseI ATTAAT 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 3 cut(s) 44, 281, 317
AvaI CYCGRG 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 292
BamHI GGATCC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 5 cut(s) 139, 142, 145, 412, 415
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 338
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 4 cut(s) 43, 240, 534, 563
BfaI CTAG 2 cut(s) 18, 231
BfmI CTRYAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 338
BisI GCNGC 6 cut(s) 153, 156, 159, 228, 426, 429
BlsI GCNGC 6 cut(s) 154, 157, 160, 229, 427, 430
Bme1390I CCNGG 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 180, 240, 470
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 5 cut(s) 52, 96, 214, 267, 363
BpmI CTGGAG 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bse1I ACTGG 2 cut(s) 392, 510
Bse3DI GCAATG 1 cut(s) 154
BseBI CCWGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 93, 453
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 185, 545
BseNI ACTGG 2 cut(s) 392, 510
BseRI GAGGAG 1 cut(s) 421
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 5 cut(s) 139, 142, 145, 412, 415
BshFI GGCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 1 cut(s) 536
BsmAI GTCTC 4 cut(s) 43, 240, 534, 563
BsmBI CGTCTC 1 cut(s) 43
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 4 cut(s) 13, 307, 322, 468
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 184, 544
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 180, 240, 470
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 4 cut(s) 8, 302, 463, 476
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 2 cut(s) 392, 510
BssMI GATC 4 cut(s) 13, 307, 322, 468
BssNI GRCGYC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 490
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 145, 292
BstDEI CTNAG 2 cut(s) 171, 531
BstF5I GGATG 2 cut(s) 93, 453
BstKTI GATC 4 cut(s) 16, 310, 325, 471
BstMAI GTCTC 4 cut(s) 43, 240, 534, 563
BstMBI GATC 4 cut(s) 13, 307, 322, 468
BstMWI GCNNNNNNNGC 6 cut(s) 149, 158, 167, 176, 185, 437
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 5 cut(s) 139, 142, 145, 412, 415
BstX2I RGATCY 2 cut(s) 13, 468
BstYI RGATCY 2 cut(s) 13, 468
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 506
BtsCI GGATG 2 cut(s) 93, 453
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 145, 292
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 178
CviAII CATG 3 cut(s) 29, 74, 542
CviJI RGCY 6 cut(s) 170, 179, 230, 328, 535, 547
CviKI_1 RGCY 6 cut(s) 170, 179, 230, 328, 535, 547
DdeI CTNAG 2 cut(s) 171, 531
DpnI GATC 4 cut(s) 15, 309, 324, 470
DpnII GATC 4 cut(s) 13, 307, 322, 468
DraI TTTAAA 1 cut(s) 315
Eco32I GATATC 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 560
EcoRI GAATTC 2 cut(s) 4, 399
EcoRII CCWGG 1 cut(s) 241
EcoRV GATATC 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 3 cut(s) 32, 77, 545
FatI CATG 3 cut(s) 28, 73, 541
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 6 cut(s) 153, 156, 159, 228, 426, 429
FokI GGATG 2 cut(s) 80, 440
Fsp4HI GCNGC 6 cut(s) 153, 156, 159, 228, 426, 429
FspBI CTAG 2 cut(s) 18, 231
GluI GCNGC 6 cut(s) 153, 156, 159, 228, 426, 429
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 536
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 32, 77, 545
HinfI GANTC 2 cut(s) 556, 563
HpaII CCGG 1 cut(s) 536
HphI GGTGA 3 cut(s) 44, 281, 317
Hpy166II GTNNAC 2 cut(s) 290, 518
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 5 cut(s) 74, 299, 553, 560, 567
Hpy8I GTNNAC 2 cut(s) 290, 518
HpyAV CCTTC 3 cut(s) 184, 296, 305
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 2 cut(s) 36, 199
HpyCH4V TGCA 7 cut(s) 11, 52, 65, 143, 290, 354, 440
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 158, 167, 176, 185, 437
HpyF3I CTNAG 2 cut(s) 171, 531
HpySE526I ACGT 2 cut(s) 36, 199
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 32, 77, 545
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 13, 307, 322, 468
LpnPI CCDG 8 cut(s) 129, 228, 255, 270, 405, 523, 549, 552
Lsp1109I GCAGC 5 cut(s) 139, 142, 145, 412, 415
LweI GCATC 5 cut(s) 52, 96, 214, 267, 363
MaeI CTAG 2 cut(s) 18, 231
MaeII ACGT 2 cut(s) 36, 199
MaeIII GTNAC 2 cut(s) 32, 200
MalI GATC 4 cut(s) 15, 309, 324, 470
MboI GATC 4 cut(s) 13, 307, 322, 468
MfeI CAATTG 2 cut(s) 339, 363
MflI RGATCY 2 cut(s) 13, 468
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 7 cut(s) 4, 109, 252, 339, 363, 399, 459
MlyI GAGTC 2 cut(s) 565, 572
MmeI TCCRAC 2 cut(s) 352, 376
MnlI CCTC 3 cut(s) 124, 399, 402
MseI TTAA 3 cut(s) 108, 314, 332
MslI CAYNNNNRTG 2 cut(s) 57, 503
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 2 cut(s) 339, 363
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 6 cut(s) 149, 158, 167, 176, 185, 437
NdeII GATC 4 cut(s) 13, 307, 322, 468
NlaIII CATG 3 cut(s) 32, 77, 545
NlaIV GGNNCC 3 cut(s) 180, 240, 470
NmuCI GTSAC 2 cut(s) 32, 200
PaeR7I CTCGAG 1 cut(s) 560
PagI TCATGA 1 cut(s) 73
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 6 cut(s) 154, 157, 160, 229, 427, 430
PleI GAGTC 2 cut(s) 564, 571
PpsI GAGTC 2 cut(s) 564, 571
Ppu21I YACGTR 1 cut(s) 200
PshBI ATTAAT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 180, 240, 470
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 13, 468
RseI CAYNNNNRTG 2 cut(s) 57, 503
SaqAI TTAA 3 cut(s) 108, 314, 332
SatI GCNGC 6 cut(s) 153, 156, 159, 228, 426, 429
Sau3AI GATC 4 cut(s) 13, 307, 322, 468
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 2 cut(s) 565, 572
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 292
SetI ASST 7 cut(s) 39, 195, 202, 307, 330, 447, 549
SfaNI GCATC 5 cut(s) 52, 96, 214, 267, 363
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 560
SlaI CTCGAG 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 57, 503
SmlI CTYRAG 2 cut(s) 553, 560
SmoI CTYRAG 2 cut(s) 553, 560
Sse9I AATT 7 cut(s) 4, 109, 252, 339, 363, 399, 459
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 18, 231
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 2 cut(s) 39, 202
TaqI TCGA 1 cut(s) 561
TasI AATT 7 cut(s) 4, 109, 252, 339, 363, 399, 459
TauI GCSGC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 108, 314, 332
Tru9I TTAA 3 cut(s) 108, 314, 332
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 2 cut(s) 32, 200
TseI GCWGC 5 cut(s) 152, 155, 158, 425, 428
Tsp45I GTSAC 2 cut(s) 32, 200
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 517
VneI GTGCAC 1 cut(s) 288
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 2 cut(s) 4, 399
XhoI CTCGAG 1 cut(s) 560
XspI CTAG 2 cut(s) 18, 231
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.