FvH4_1g24100

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005393
Physical Location & Seq
Forward (+)
15948084 .. 15958053
9970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24100.t1

Sequence Viewer

Length: 2931 bp
ATGAGTAGAAGCAGCAGGAAACGCTCCTCTAAATGGGATTTATCTGAAGAGCCTCAGTTTGAAGATGCAAATATACCAGATGATGGTTGGATGGGAAAAGCAGGTAGGCCATTTCATCATAAAGAATCTGGACGTGAGTGGCACTCTCCAGAGCCTGGTGGTAGTAATGCTCCAAAATGGTCTGGGTTAGAGACGAATGATATGCAGAGATCTAAGCGTAGTTTAGGATTGCCAACCAGGGAACATTTGCCTGGAAGCAGAAGCTCACATAGGAATGAAAGTATCAGTAAGGGCGGTAGCAGATACACAGAAGACTCCATGGTATGGGAAGAAGATGGAAATTGCAGCACAAGGATGTCTCCTGGTCTTGAAGAGTGGAGACAACATCGTAGTCGGTCCCCCAAAAGTGGTTGGAGCAGGTCACTGAGGGGTAGGAGTAGAAGTAGAAGCTGGACCAGGAGTAGAAGCCAGAGCTGGAGTAGGAGTCCAGATCGTGGCTATAGGCGAGAATCAGTTTTCCTTGACAGAAGTAGAAGCAGATCAGGAGTTTCAGCTCAAGTGTGCAAGGATTTTGCTGCTGGAAGATGCAGGAGAGGAAGTGACTGTCAGTTACTACATGAGGGCAATTCCAGTTATGATGATAGCTGGGAAGGTAGGCACAGGAAAGGCAGCGGTCCAAAATATCCTACAGCCCCTATTGCAGGGGATAATCCATTAAAGAGTGGAAGGTCTTCGTATGGTAATGATTATGTGAATGGGAAGTCGAGGAGGGAGGCATCTAGCAAGTTTGATAATCTCCGAGTTTCTGATGGGTTCAGTAAAGATAATGCAAATGAGATTATTAGAGAAAGGGACAATGACAGGGAAAGGGACAGTGATAGAAGGAGAAGAGATGCTTCTACCGAGCGAGGTGCTGAGCGTGAACCCCGCAGGAGTGGTGATATTCCTTGCAGATTTTTTGCCGCGGGAAATTGTCGGAACAAAAACTATTGTCGGTTTTCCCATGATATTCAGTCACATGTAAGCTCTGAAAGAAGGTTACGGGATGACAGGTGGGGATTGAGCCACAATTTAAATGATACAGACCAGGCATGGAATGGTCCAAAATGGAATGGCACTCCATCGGATTCTGCAAAGTTGAGCCCTTCAAATAATACCGGAAGGCCACGGGATGGCAGATGGGCCCTGGGACAACATAGAAATGATGCAGACCATGCATGGGATGGACAAAAATGGAGTGATACTGCAGCTCTGCCAGAGTCAGCAAAGTTGGCTGCAGATAATAACGGAAATATTGGCGTTCCGGAGCGAAGGTCAAATGCTTGGTCTATGAATGATAATAGATGGGGGCATGGTCATAACAACGAGAAAGAAATGCGTGGTGACCCAAGTGTTAATCATGAACCAGCCAAGAAGAATGATAAGGAAGCACAACTGTGGAAGGAGGATAAAGTAGGTGCCAAGTCAAAAGATTCTGAAAAATGGCTTGGTGATATGTCTCCGGATTGGAATTATACATTGCAACCCTCCAATATTGGGAAAGAAGAGCATAGCCACATTACACGAGGTTCTGAAATTTCAAGACTTAATGATACTTCTTTAAATGCTTGCAAACAAGACATGTCTCCGGATTGGAATTATACATTGCAAACGTCGAACAATATCAGCAGAGAAGAGCGTGGTCACCTTGCACGGGGTTCAGAATCTTCAAGACTTAATGATACTTCTCAAAAAGCTACCAACCAAGATATAATGCGAGAGGCTTCAGGCCAGGTACATGGTGGTGCTTCAGTTATGCAACCAATGATAGCTGAAAGATCTAATTATCTACACAGCCAGGACATAAGGGAAGGTGGTTCCATTGGATTGCCACAGGATGGCAAGAATGCAATTGATAGAACTGCTAGTTCTCGCGGTGACCTCAATGTTTCTGCAAATATCATGTCACACCAAAGCTTTGACCATAGTGTGCAGAGTTCAACTGCTTATCCCTTTCCTGGCTTGAACACAATTGGGCAAAGTCAAGCACTTGTCCCTTCTCACACCCAAGGAGGACTTGTAAATCCACATGATACACTATCAGCACAGAGGAATTCTGTCATCAAGTTAGATATAGGGGATTCAAAGCCATCACTAGTTACTGGCCTTCCTCCAGTGAGTAATGTGGTAGGTGGTAAAGATCTTACACAACTGACCAGTCTTTCAGCCTCTCTGGCTCATTTATTGGAAAATGGACACCATCTTCCACACCTTTATGCTGCTTTAAATTCTCATGATGCATTGAATGCTCCTCCCTTTTCCAAATCTGAAGGATCTTCTGACCAGTTTTCAGATATTCGGCCAGATCCAGCCATGTTGTCTCAGAAGCCATACGATCCTACATCTAATAGCATGGAACTTAAGAAGCATGAACACAGTAACAACTCTGCTTGCCTTGTGCTAAATAGCACAGGTACGACAAGTGTTGATGGAAAGTTTGAGAAGCCTTCGAATGATAACCATCAGATTTGTAATTCAGAAGAATCTAGGCGTAAGAGCCACCAGCCTGATGGAATTAATAAACTTGGCATTGAGGTGAGGAAGAAAGCAGAAGAAGAGAGCGACTCCCCAGAAAATGGTCCCTTGGAGGTCACAGATAAAGATGAGGCTGATGAGGGCAAGAAACCCAAGGAAGCGAAGGGGATTCGTGCATTTAAATTTGCTCTTGCGGAGTTCGTTAAAGATCTTTTGAAACCCTCATGGAAAGACGGTCAAGTCAGCAAAGATGCCTACAAAACCATAGTGAAGAAGGTGGTTGACAAAGTGACTGGTACCATACCGGGGGCTAATATTCCACAGACACAAGAAAAGATTGACAGTTATTTGTCCTTTTCAAAACCGAAGCTGACAAAACTTGTACTGGCATATGTGGAAAAAATGCAGAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

977

Amino Acids

108.84

Weight (kDa)

8.98

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 903 - 942 9.6e-06 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2753
Acc36I ACCTGC 2 cut(s) 92, 408
Acc65I GGTACC 1 cut(s) 2810
AccB1I GGYRCC 2 cut(s) 1457, 2810
AccB7I CCANNNNNTGG 7 cut(s) 83, 155, 324, 494, 1172, 1877, 2615
AccII CGCG 2 cut(s) 965, 1914
AccIII TCCGGA 3 cut(s) 1303, 1501, 1627
AciI CCGC 7 cut(s) 294, 672, 928, 963, 965, 1914, 2708
AclWI GGATC 3 cut(s) 2320, 2339, 2369
AcoI YGGCCR 1 cut(s) 2339
AcsI RAATTY 4 cut(s) 1575, 2092, 2266, 2696
AcuI CTGAAG 4 cut(s) 66, 1749, 1773, 2328
AfaI GTAC 4 cut(s) 1776, 2455, 2812, 2898
AflII CTTAAG 1 cut(s) 2399
AflIII ACRYGT 2 cut(s) 1018, 1620
AhlI ACTAGT 1 cut(s) 2134
AjiI CACGTC 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 1470, 1502
AleI CACNNNNGTG 1 cut(s) 1435
Alw26I GTCTC 6 cut(s) 185, 363, 373, 1503, 1629, 2364
AlwI GGATC 3 cut(s) 2320, 2339, 2369
AlwNI CAGNNNCTG 1 cut(s) 155
Aor13HI TCCGGA 3 cut(s) 1303, 1501, 1627
AoxI GGCC 6 cut(s) 107, 1163, 1182, 1768, 2143, 2339
ApaI GGGCCC 1 cut(s) 1186
ApeKI GCWGC 7 cut(s) 12, 345, 575, 669, 1247, 1274, 2258
ApoI RAATTY 4 cut(s) 1575, 2092, 2266, 2696
ArsI GACNNNNNNTTYG 4 cut(s) 1310, 1342, 1928, 1960
AseI ATTAAT 1 cut(s) 2556
Asp700I GAANNNNTTC 1 cut(s) 730
Asp718I GGTACC 1 cut(s) 2810
AspS9I GGNCC 7 cut(s) 396, 453, 674, 1100, 1182, 1183, 2618
AsuC2I CCSGG 1 cut(s) 2820
AsuHPI GGTGA 6 cut(s) 950, 1394, 1502, 1676, 1928, 2587
AsuII TTCGAA 1 cut(s) 2489
AvaII GGWCC 5 cut(s) 396, 453, 674, 1100, 2618
BaeGI GKGCMC 1 cut(s) 1186
BanI GGYRCC 2 cut(s) 1457, 2810
BanII GRGCYC 2 cut(s) 1145, 1186
BauI CACGAG 1 cut(s) 1563
BbsI GAAGAC 2 cut(s) 318, 723
BbvI GCAGC 7 cut(s) 24, 357, 562, 681, 1259, 1261, 2245
BcgI CGANNNNNNTGC 4 cut(s) 184, 218, 893, 927
BcnI CCSGG 1 cut(s) 2820
BcoDI GTCTC 6 cut(s) 185, 363, 373, 1503, 1629, 2364
BcuI ACTAGT 1 cut(s) 2134
BfaI CTAG 4 cut(s) 780, 1905, 2135, 2526
BfmI CTRYAG 4 cut(s) 499, 687, 1245, 1275
BfrI CTTAAG 1 cut(s) 2399
BfuAI ACCTGC 2 cut(s) 92, 408
BglI GCCNNNNNGGC 1 cut(s) 2213
BglII AGATCT 4 cut(s) 209, 1817, 2179, 2722
BisI GCNGC 8 cut(s) 13, 346, 576, 670, 963, 1248, 1275, 2259
BlpI GCTNAGC 1 cut(s) 915
BlsI GCNGC 8 cut(s) 14, 347, 577, 671, 964, 1249, 1276, 2260
Bme18I GGWCC 5 cut(s) 396, 453, 674, 1100, 2618
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 7 cut(s) 396, 453, 674, 1100, 1182, 1183, 2618
BmiI GGNNCC 6 cut(s) 398, 1184, 1459, 1858, 2620, 2812
BmsI GCATC 7 cut(s) 55, 575, 785, 883, 1195, 2266, 2755
BpiI GAAGAC 2 cut(s) 318, 723
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 2588, 2620
BpmI CTGGAG 3 cut(s) 132, 496, 2136
Bpu1102I GCTNAGC 1 cut(s) 915
Bpu14I TTCGAA 1 cut(s) 2489
BpuEI CTTGAG 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 2820
BsaBI GATNNNNATC 1 cut(s) 2499
BsaWI WCCGGW 4 cut(s) 1157, 1303, 1501, 1627
Bse1I ACTGG 7 cut(s) 630, 2146, 2153, 2196, 2323, 2812, 2904
Bse3DI GCAATG 2 cut(s) 1517, 1643
Bse8I GATNNNNATC 1 cut(s) 2499
BseAI TCCGGA 3 cut(s) 1303, 1501, 1627
BseGI GGATG 6 cut(s) 96, 360, 1051, 1177, 1228, 1882
BseJI GATNNNNATC 1 cut(s) 2499
BseMI GCAATG 2 cut(s) 1517, 1643
BseMII CTCAG 4 cut(s) 68, 416, 906, 2375
BseNI ACTGG 7 cut(s) 630, 2146, 2153, 2196, 2323, 2812, 2904
BseRI GAGGAG 3 cut(s) 16, 781, 2280
BseSI GKGCMC 1 cut(s) 1186
BseXI GCAGC 7 cut(s) 24, 357, 562, 681, 1259, 1261, 2245
BseYI CCCAGC 1 cut(s) 645
BsgI GTGCAG 1 cut(s) 1991
Bsh1236I CGCG 2 cut(s) 965, 1914
BshFI GGCC 6 cut(s) 109, 1165, 1184, 1770, 2145, 2341
BshNI GGYRCC 2 cut(s) 1457, 2810
BsiSI CCGG 5 cut(s) 1158, 1304, 1502, 1628, 2819
BslFI GGGAC 6 cut(s) 382, 866, 884, 1203, 2018, 2604
BsmAI GTCTC 6 cut(s) 185, 363, 373, 1503, 1629, 2364
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 6 cut(s) 382, 866, 884, 1203, 2018, 2604
BsmI GAATGC 2 cut(s) 1891, 2290
BsnI GGCC 6 cut(s) 109, 1165, 1184, 1770, 2145, 2341
Bsp119I TTCGAA 1 cut(s) 2489
Bsp120I GGGCCC 1 cut(s) 1182
Bsp1286I GDGCHC 2 cut(s) 1145, 1186
Bsp13I TCCGGA 3 cut(s) 1303, 1501, 1627
Bsp143I GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
Bsp1720I GCTNAGC 1 cut(s) 915
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 7 cut(s) 294, 672, 928, 963, 965, 1914, 2708
BspANI GGCC 6 cut(s) 109, 1165, 1184, 1770, 2145, 2341
BspCNI CTCAG 4 cut(s) 67, 417, 907, 2374
BspEI TCCGGA 3 cut(s) 1303, 1501, 1627
BspFNI CGCG 2 cut(s) 965, 1914
BspHI TCATGA 2 cut(s) 1399, 2272
BspLI GGNNCC 6 cut(s) 398, 1184, 1459, 1858, 2620, 2812
BspMAI CTGCAG 2 cut(s) 1249, 1279
BspMI ACCTGC 2 cut(s) 92, 408
BspPI GGATC 3 cut(s) 2320, 2339, 2369
BspQI GCTCTTC 3 cut(s) 42, 1539, 1668
BspT104I TTCGAA 1 cut(s) 2489
BspT107I GGYRCC 2 cut(s) 1457, 2810
BspTI CTTAAG 1 cut(s) 2399
BsrDI GCAATG 2 cut(s) 1517, 1643
BsrI ACTGG 7 cut(s) 630, 2146, 2153, 2196, 2323, 2812, 2904
BssMI GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
BssSI CACGAG 1 cut(s) 1563
BssT1I CCWWGG 4 cut(s) 318, 2047, 2622, 2667
Bst2BI CACGAG 1 cut(s) 1563
Bst4CI ACNGT 6 cut(s) 605, 875, 1437, 2417, 2750, 2858
Bst6I CTCTTC 6 cut(s) 42, 366, 883, 1539, 1668, 2589
BstAFI CTTAAG 1 cut(s) 2399
BstAPI GCANNNNNTGC 2 cut(s) 1214, 2285
BstBI TTCGAA 1 cut(s) 2489
BstC8I GCNNGC 2 cut(s) 1609, 2431
BstDEI CTNAG 5 cut(s) 54, 213, 425, 915, 2361
BstDSI CCRYGG 3 cut(s) 318, 963, 1166
BstEII GGTNACC 3 cut(s) 1382, 1682, 1916
BstENI CCTNNNNNAGG 1 cut(s) 699
BstF5I GGATG 6 cut(s) 96, 360, 1051, 1177, 1228, 1882
BstFNI CGCG 2 cut(s) 965, 1914
BstKTI GATC 9 cut(s) 212, 493, 542, 1820, 2182, 2315, 2347, 2377, 2725
BstMAI GTCTC 6 cut(s) 185, 363, 373, 1503, 1629, 2364
BstMBI GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
BstMWI GCNNNNNNNGC 6 cut(s) 21, 698, 1214, 1271, 2213, 2285
BstNSI RCATGY 2 cut(s) 1022, 1624
BstPI GGTNACC 3 cut(s) 1382, 1682, 1916
BstSFI CTRYAG 4 cut(s) 499, 687, 1245, 1275
BstSLI GKGCMC 1 cut(s) 1186
BstUI CGCG 2 cut(s) 965, 1914
BstV1I GCAGC 7 cut(s) 24, 357, 562, 681, 1259, 1261, 2245
BstV2I GAAGAC 2 cut(s) 318, 723
BstX2I RGATCY 6 cut(s) 209, 1817, 2179, 2312, 2344, 2722
BstXI CCANNNNNNTGG 2 cut(s) 1778, 2549
BstYI RGATCY 6 cut(s) 209, 1817, 2179, 2312, 2344, 2722
BsuRI GGCC 6 cut(s) 109, 1165, 1184, 1770, 2145, 2341
BtgI CCRYGG 3 cut(s) 318, 963, 1166
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 6 cut(s) 96, 360, 1051, 1177, 1228, 1882
BtsIMutI CAGTG 3 cut(s) 422, 880, 2160
BveI ACCTGC 2 cut(s) 92, 408
Cac8I GCNNGC 2 cut(s) 1609, 2431
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 2 cut(s) 1399, 2272
Cfr13I GGNCC 7 cut(s) 396, 453, 674, 1100, 1182, 1183, 2618
Cfr42I CCGCGG 1 cut(s) 966
Csp6I GTAC 4 cut(s) 1775, 2454, 2811, 2897
CviQI GTAC 4 cut(s) 1775, 2454, 2811, 2897
DdeI CTNAG 5 cut(s) 54, 213, 425, 915, 2361
DpnI GATC 9 cut(s) 211, 492, 541, 1819, 2181, 2314, 2346, 2376, 2724
DpnII GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
DraI TTTAAA 4 cut(s) 1074, 1602, 2265, 2695
DrdI GACNNNNNNGTC 1 cut(s) 2753
DseDI GACNNNNNNGTC 1 cut(s) 2753
EaeI YGGCCR 1 cut(s) 2339
Eam1104I CTCTTC 6 cut(s) 42, 366, 883, 1539, 1668, 2589
EarI CTCTTC 6 cut(s) 42, 366, 883, 1539, 1668, 2589
Eco130I CCWWGG 4 cut(s) 318, 2047, 2622, 2667
Eco24I GRGCYC 2 cut(s) 1145, 1186
Eco47I GGWCC 5 cut(s) 396, 453, 674, 1100, 2618
Eco57I CTGAAG 4 cut(s) 66, 1749, 1773, 2328
Eco91I GGTNACC 3 cut(s) 1382, 1682, 1916
EcoNI CCTNNNNNAGG 1 cut(s) 699
EcoO109I RGGNCCY 1 cut(s) 1183
EcoO65I GGTNACC 3 cut(s) 1382, 1682, 1916
EcoRI GAATTC 1 cut(s) 2092
EcoT14I CCWWGG 4 cut(s) 318, 2047, 2622, 2667
EcoT22I ATGCAT 2 cut(s) 1219, 2281
EcoT38I GRGCYC 2 cut(s) 1145, 1186
ErhI CCWWGG 4 cut(s) 318, 2047, 2622, 2667
Esp3I CGTCTC 1 cut(s) 185
FalI AAGNNNNNCTT 4 cut(s) 880, 912, 2040, 2072
FaqI GGGAC 6 cut(s) 382, 866, 884, 1203, 2018, 2604
FauI CCCGC 2 cut(s) 935, 958
FauNDI CATATG 1 cut(s) 2905
Fnu4HI GCNGC 8 cut(s) 13, 346, 576, 670, 963, 1248, 1275, 2259
FokI GGATG 6 cut(s) 103, 367, 1058, 1184, 1235, 1889
FriOI GRGCYC 2 cut(s) 1145, 1186
Fsp4HI GCNGC 8 cut(s) 13, 346, 576, 670, 963, 1248, 1275, 2259
FspBI CTAG 4 cut(s) 780, 1905, 2135, 2526
GluI GCNGC 8 cut(s) 13, 346, 576, 670, 963, 1248, 1275, 2259
GsaI CCCAGC 1 cut(s) 649
GsuI CTGGAG 3 cut(s) 132, 496, 2136
HaeIII GGCC 6 cut(s) 109, 1165, 1184, 1770, 2145, 2341
HapII CCGG 5 cut(s) 1158, 1304, 1502, 1628, 2819
HincII GTYRAC 1 cut(s) 2797
HindII GTYRAC 1 cut(s) 2797
HindIII AAGCTT 1 cut(s) 1954
HpaII CCGG 5 cut(s) 1158, 1304, 1502, 1628, 2819
HphI GGTGA 6 cut(s) 950, 1394, 1502, 1676, 1928, 2587
Hpy166II GTNNAC 2 cut(s) 923, 2797
Hpy8I GTNNAC 2 cut(s) 923, 2797
Hpy99I CGWCG 1 cut(s) 1657
HpyCH4III ACNGT 6 cut(s) 605, 875, 1437, 2417, 2750, 2858
HpyCH4IV ACGT 2 cut(s) 133, 1652
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 698, 1214, 1271, 2213, 2285
HpyF3I CTNAG 5 cut(s) 54, 213, 425, 915, 2361
HpySE526I ACGT 2 cut(s) 133, 1652
Kpn2I TCCGGA 3 cut(s) 1303, 1501, 1627
KpnI GGTACC 1 cut(s) 2814
KspI CCGCGG 1 cut(s) 966
Kzo9I GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
LguI GCTCTTC 3 cut(s) 42, 1539, 1668
LmnI GCTCC 5 cut(s) 29, 175, 414, 1306, 2293
Lsp1109I GCAGC 7 cut(s) 24, 357, 562, 681, 1259, 1261, 2245
LweI GCATC 7 cut(s) 55, 575, 785, 883, 1195, 2266, 2755
MaeI CTAG 4 cut(s) 780, 1905, 2135, 2526
MaeII ACGT 2 cut(s) 133, 1652
MalI GATC 9 cut(s) 211, 492, 541, 1819, 2181, 2314, 2346, 2376, 2724
MboI GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
MfeI CAATTG 2 cut(s) 1890, 2010
MflI RGATCY 6 cut(s) 209, 1817, 2179, 2312, 2344, 2722
MhlI GDGCHC 2 cut(s) 1145, 1186
MlyI GAGTC 4 cut(s) 308, 493, 1268, 2597
MmeI TCCRAC 3 cut(s) 68, 392, 956
Mph1103I ATGCAT 2 cut(s) 1219, 2281
MroI TCCGGA 3 cut(s) 1303, 1501, 1627
MroXI GAANNNNTTC 1 cut(s) 730
MslI CAYNNNNRTG 7 cut(s) 273, 353, 1200, 1435, 1782, 2253, 2573
MspA1I CMGCKG 2 cut(s) 672, 965
MspCI CTTAAG 1 cut(s) 2399
MspI CCGG 5 cut(s) 1158, 1304, 1502, 1628, 2819
MunI CAATTG 2 cut(s) 1890, 2010
Mva1269I GAATGC 2 cut(s) 1891, 2290
MvnI CGCG 2 cut(s) 965, 1914
MwoI GCNNNNNNNGC 6 cut(s) 21, 698, 1214, 1271, 2213, 2285
NciI CCSGG 1 cut(s) 2820
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 2905
NdeII GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
NlaIV GGNNCC 6 cut(s) 398, 1184, 1459, 1858, 2620, 2812
NmuCI GTSAC 9 cut(s) 420, 599, 1014, 1382, 1682, 1916, 1944, 2629, 2803
NsiI ATGCAT 2 cut(s) 1219, 2281
NspI RCATGY 2 cut(s) 1022, 1624
NspV TTCGAA 1 cut(s) 2489
OliI CACNNNNGTG 1 cut(s) 1435
PagI TCATGA 2 cut(s) 1399, 2272
PasI CCCWGGG 1 cut(s) 1186
PciI ACATGT 2 cut(s) 1018, 1620
PciSI GCTCTTC 3 cut(s) 42, 1539, 1668
PctI GAATGC 2 cut(s) 1891, 2290
PdmI GAANNNNTTC 1 cut(s) 730
PfeI GAWTC 8 cut(s) 125, 509, 1127, 1472, 1703, 2120, 2522, 2683
PflMI CCANNNNNTGG 7 cut(s) 83, 155, 324, 494, 1172, 1877, 2615
PkrI GCNGC 8 cut(s) 14, 347, 577, 671, 964, 1249, 1276, 2260
PleI GAGTC 4 cut(s) 308, 492, 1267, 2597
PpsI GAGTC 4 cut(s) 308, 492, 1267, 2597
PscI ACATGT 2 cut(s) 1018, 1620
PshBI ATTAAT 1 cut(s) 2556
PspEI GGTNACC 3 cut(s) 1382, 1682, 1916
PspFI CCCAGC 1 cut(s) 645
PspN4I GGNNCC 6 cut(s) 398, 1184, 1459, 1858, 2620, 2812
PspOMI GGGCCC 1 cut(s) 1182
PspPI GGNCC 7 cut(s) 396, 453, 674, 1100, 1182, 1183, 2618
PstI CTGCAG 2 cut(s) 1249, 1279
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 6 cut(s) 209, 1817, 2179, 2312, 2344, 2722
RsaI GTAC 4 cut(s) 1776, 2455, 2812, 2898
RsaNI GTAC 4 cut(s) 1775, 2454, 2811, 2897
RseI CAYNNNNRTG 7 cut(s) 273, 353, 1200, 1435, 1782, 2253, 2573
SacII CCGCGG 1 cut(s) 966
SapI GCTCTTC 3 cut(s) 42, 1539, 1668
SatI GCNGC 8 cut(s) 13, 346, 576, 670, 963, 1248, 1275, 2259
Sau3AI GATC 9 cut(s) 209, 490, 539, 1817, 2179, 2312, 2344, 2374, 2722
Sau96I GGNCC 7 cut(s) 396, 453, 674, 1100, 1182, 1183, 2618
SchI GAGTC 4 cut(s) 308, 493, 1268, 2597
SduI GDGCHC 2 cut(s) 1145, 1186
SfaNI GCATC 7 cut(s) 55, 575, 785, 883, 1195, 2266, 2755
SfcI CTRYAG 4 cut(s) 499, 687, 1245, 1275
Sfr303I CCGCGG 1 cut(s) 966
SfuI TTCGAA 1 cut(s) 2489
SgrBI CCGCGG 1 cut(s) 966
SinI GGWCC 5 cut(s) 396, 453, 674, 1100, 2618
SmiI ATTTAAAT 2 cut(s) 1074, 2695
SmiMI CAYNNNNRTG 7 cut(s) 273, 353, 1200, 1435, 1782, 2253, 2573
SmlI CTYRAG 2 cut(s) 555, 2399
SmoI CTYRAG 2 cut(s) 555, 2399
SpeI ACTAGT 1 cut(s) 2134
SsiI CCGC 7 cut(s) 294, 672, 928, 963, 965, 1914, 2708
SspI AATATT 3 cut(s) 1294, 1534, 2830
SspMI CTAG 4 cut(s) 780, 1905, 2135, 2526
StyI CCWWGG 4 cut(s) 318, 2047, 2622, 2667
SwaI ATTTAAAT 2 cut(s) 1074, 2695
TaaI ACNGT 6 cut(s) 605, 875, 1437, 2417, 2750, 2858
TaiI ACGT 2 cut(s) 136, 1655
TaqI TCGA 3 cut(s) 764, 1655, 2489
TaqII GACCGA 1 cut(s) 384
TatI WGTACW 1 cut(s) 2896
TauI GCSGC 1 cut(s) 965
TfiI GAWTC 8 cut(s) 125, 509, 1127, 1472, 1703, 2120, 2522, 2683
TscAI CASTG 3 cut(s) 429, 880, 2160
TseFI GTSAC 9 cut(s) 420, 599, 1014, 1382, 1682, 1916, 1944, 2629, 2803
TseI GCWGC 7 cut(s) 12, 345, 575, 669, 1247, 1274, 2258
Tsp45I GTSAC 9 cut(s) 420, 599, 1014, 1382, 1682, 1916, 1944, 2629, 2803
TspDTI ATGAA 5 cut(s) 104, 291, 1346, 1416, 2424
TspGWI ACGGA 1 cut(s) 1302
TspRI CASTG 3 cut(s) 429, 880, 2160
Van91I CCANNNNNTGG 7 cut(s) 83, 155, 324, 494, 1172, 1877, 2615
Vha464I CTTAAG 1 cut(s) 2399
VpaK11BI GGWCC 5 cut(s) 396, 453, 674, 1100, 2618
VspI ATTAAT 1 cut(s) 2556
XagI CCTNNNNNAGG 1 cut(s) 699
XapI RAATTY 4 cut(s) 1575, 2092, 2266, 2696
XceI RCATGY 2 cut(s) 1022, 1624
XcmI CCANNNNNNNNNTGG 5 cut(s) 84, 1094, 1220, 1778, 2546
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 4 cut(s) 780, 1905, 2135, 2526
Zsp2I ATGCAT 2 cut(s) 1219, 2281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.