MD01G1013400.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0005393
Physical Location & Seq
Forward (+)
6501774 .. 6507712
5939 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1013400.v1.1.491

Sequence Viewer

Length: 2658 bp
ATGAGTAGAAGCAACAGAAAGCGGTCTTCTAAATGGGATTTGGTAGAAGGGCCTCAATTTGAAGATGCAAATATGCAGGACAACGGTTGGATGGGAAAGGCAGGTAGGGCATTTCATCATAAGGAATCTGGACGTGACTGGCTTTCTCCGGAGACAAATGATCTGCACAGACCTAAGCATGATTTGGATATGCCATCCAGGGAACCTTTGCCCGGAAGCAGAGGCTCACATAAAAATGAGAGTATCAATAAGGGATGCAAGAGATACATGAATGACTCTATGGTGTGGGATGGAGATGGAAATTGCAGCACAAGGATGTCTCCTGGTCTTGATGAGTGGAGAGAACATCGCAGTCGGTCCCCAAAAAGTGGTTGGAGAAGGTCACTGAGAGGTAGGAGTAGAAGTAGAAGCAGGAGCAGGAGTAAGAGCCAGAGCTGGAGCAGGAGTAAGAGCCAGAGCTGGAGTAGGAGCCCTGATCGTGGTTATAGGCGGGAATCACTTTTCCTCGACAGAAATAGAGGCAGGCCAGGAATTTCAGCTCAATTGTGCAAAGATTTTATGACTGGGAGATGCAGGAGAGGTAGTGATTGCCAAATGCTTCATGAGGGTAATTCCAATTATGATGATAGCTGGGAAAGTCGACACAGGAAATGTGATGCTTCGAGATACTCTACCCCTCCTGATACCACCGAGTACTATCCATTAAAAAGTGAAAGATATTCTGCGTATTGTAGTGATTTTGCAAAAGGGAAGTGCCGGAGGGGGGCATCTTGCAAGTTCGATCACCATCGTGCTTCTGATGGATTCAGTAAAGGTTCTACAAATGAGAATACTAGAGAAAGGGAAAATGAAAGAAGGAACAGAGATATTTCTACAGAGCGAGGTGCTGAGCGTGTACTGCACAGGAGTAGTGATATTCCTTGCAAATTTTTTGCTGCGGGAAATTGTCGTAATAAAAAGAATTGTCGGTTTTCTCATCATATTCAAGCTCGTGCAAGTCCTGAAAGAATGTCACGGGATGGCCGGTGGGGCCCAAGTCACAGTTTAAATGATGCAGCCCCAGCATGGAGTGGTCCAAAATGGAGTGATACCGGGACTCTGTCAGATGCCGCGATGTTGACTGTAGATAACAGAAATATTGGTGTTCCAGAGGTAAGGTCTAGTGCTTGGTCTGTAGATGATAATAGATGGGGGTGTGATAAGAACAATGAGAACAAAAATTGTGCTGACCGTAGTGTTAGTCATGAAGCAGTTGAGAGGAATGAGAAGGATACAAATCTGTGGAACGAAGGTAGTGTGGGTGCTCGTGTGGATCTTCCTAAATCGAGAGATACTGAAAAATGGCTTGGTGACATGTCTCCTGATTGGAATTACACGGTGCAATCCTCCAACCATGTTGGGAAACAAGAGCATAGTCGCATTACTCAAGGTTCAGAACCTTCCACTCAGGTGCATGGTGCTGCTTCAATTATTGAACCAATGGTAGCTGAAAGATCTGATTTTCTGCAGAACAAGGATGTAAGGGTAGATGGAGTTATATCCGTGCCATATGACAATAGGACTGCCATTGAAGAACCTTCTAGTTTTCGTAATAACCTAAATGTTACTGCAAATATCATGGCCCGCCAAAGCTTTGACCACAGTGGCCAGAGTTCAAGTGCTTTTCCTTTTTCAGGATTAAGCACAAGTGGGCAAAGTAAAAAACTAATCCCATGCGGAGGAGTTGTAAAAAGTCCACAAGATACACTGTCCCCAGAGAGTAAATCTGTGACCAAGTCAGATATAGGGGATGCAAAAACTTCACTAGTTGATGGAATTCCTCAAGTTCCAAATTTGGTAGGTGGTAAAGAACTTACGCAACTTACCAATCTTTCAGCTTCTCTGGCTCAGTTACTTGGAAATCGGCAGCAACTTCCACAGATTTATGCTGCTTTAAATTCTCATAATGCACCTCTCCTTCCCAAATCAGAAAGATCTACTGAGCAGCTTTTGGCAGCAGCCATTCAGCGCGATCCAACGGTGGTATCTCATAAGCCGTATGATCCTATGTGTGATAGCATAGAACATAGAATTATTAACAATCAAATGTGCCTTTTGCCAAATAGTGCTGGAAACACAAGCATTGATAGAAAAGTAGAGAACCTGTCAAATGTTGTATCTCTATCGTCTTTACCTAGTGGAGCAAATGCAAACAATTATCATCAGACTAATAATCCAGTGGAAGAACCTACACATAAGGATCACCAATTAAGTCAGCATGGTGCAAAGTCTGAGGTTGTCGAGGGAAATGGTGCACTTGGGGCCGAGGAAAGCAAGAGCGTGCAGGAAGAGAATAATTCCCCAGAGAATGGTCCCATAGAGGTCAAAGGGGGCAAGAAAGTCAAGGAAGTGAAGGGGAGCCGTGCATTTAGATTTGCACTTGTGGAAAACGTCAAGGAGCTTTTAAAACCCTCATGGAAAGAAGGTCAAGTCAGCAAAGATGCTTACAAAACGATAGTGAAGAAGGTGGTTGATAAAGTGACCAGTACCATGCAGGGGGCTAATATTCCCCAGACACAAGAGAAGATTGACCATTATCTATCATTTTCAAAACCGAAGCTTACTAAACTTGTACAGGTTGCTAGTCCTGCATATGTAGAAAAAATGCAGAAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

886

Amino Acids

98.9

Weight (kDa)

9.26

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 807 - 860 9.4e-08 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB7I CCANNNNNTGG 2 cut(s) 368, 2348
AccI GTMKAC 1 cut(s) 640
AccII CGCG 2 cut(s) 1112, 2010
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 6 cut(s) 22, 490, 938, 1110, 1624, 1716
AclWI GGATC 4 cut(s) 1320, 2006, 2036, 2247
AcoI YGGCCR 2 cut(s) 1021, 1645
AcsI RAATTY 5 cut(s) 531, 926, 1815, 1831, 1936
AfaI GTAC 4 cut(s) 695, 897, 2527, 2613
AfiI CCNNNNNNNGG 9 cut(s) 212, 368, 479, 763, 1065, 1673, 1718, 2348, 2535
AflIII ACRYGT 1 cut(s) 1353
AgsI TTSAA 7 cut(s) 62, 986, 1467, 1475, 1571, 1656, 2589
AhlI ACTAGT 1 cut(s) 1804
AjiI CACGTC 1 cut(s) 134
AjnI CCWGG 3 cut(s) 197, 322, 526
AjuI GAANNNNNNNTTGG 2 cut(s) 1329, 1361
AleI CACNNNNGTG 2 cut(s) 789, 1448
Alw21I GWGCWC 2 cut(s) 1306, 2296
Alw26I GTCTC 3 cut(s) 146, 324, 1362
Alw44I GTGCAC 1 cut(s) 2292
AlwI GGATC 4 cut(s) 1320, 2006, 2036, 2247
Aor13HI TCCGGA 1 cut(s) 148
AoxI GGCC 7 cut(s) 50, 524, 1021, 1030, 1620, 1645, 2301
ApaI GGGCCC 1 cut(s) 1034
ApaLI GTGCAC 1 cut(s) 2292
ApeKI GCWGC 9 cut(s) 306, 935, 1055, 1460, 1906, 1928, 1984, 1994, 1997
ApoI RAATTY 5 cut(s) 531, 926, 1815, 1831, 1936
AspLEI GCGC 1 cut(s) 2010
AspS9I GGNCC 8 cut(s) 50, 357, 1030, 1031, 1073, 1621, 2301, 2351
AsuC2I CCSGG 2 cut(s) 213, 1093
AsuHPI GGTGA 3 cut(s) 776, 1361, 2234
AvaII GGWCC 3 cut(s) 357, 1073, 2351
BaeGI GKGCMC 2 cut(s) 1034, 2296
BaeI ACNNNNGTAYC 2 cut(s) 2007, 2040
BalI TGGCCA 1 cut(s) 1647
BanII GRGCYC 2 cut(s) 473, 1034
BauI CACGAG 2 cut(s) 990, 1305
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 1306, 2296
BbvI GCAGC 9 cut(s) 318, 922, 1067, 1447, 1915, 1918, 1996, 2006, 2009
BceAI ACGGC 2 cut(s) 2020, 2385
BciT130I CCWGG 3 cut(s) 199, 324, 528
BciVI GTATCC 1 cut(s) 1264
BcnI CCSGG 2 cut(s) 213, 1093
BcoDI GTCTC 3 cut(s) 146, 324, 1362
BcuI ACTAGT 1 cut(s) 1804
BfaI CTAG 6 cut(s) 834, 1161, 1581, 1805, 2175, 2622
BfmI CTRYAG 4 cut(s) 873, 1122, 1173, 1505
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 1264
BglI GCCNNNNNGGC 1 cut(s) 1029
BglII AGATCT 2 cut(s) 1493, 1973
BlpI GCTNAGC 1 cut(s) 888
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 5 cut(s) 199, 213, 324, 528, 1093
Bme18I GGWCC 3 cut(s) 357, 1073, 2351
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 8 cut(s) 50, 357, 1030, 1031, 1073, 1621, 2301, 2351
BmiI GGNNCC 8 cut(s) 204, 359, 470, 1031, 1032, 2302, 2353, 2399
BmrFI CCNGG 5 cut(s) 199, 213, 324, 528, 1093
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 9 cut(s) 55, 245, 560, 646, 776, 1042, 1096, 1780, 2470
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 457, 481
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 888
BpuEI CTTGAG 2 cut(s) 1410, 1806
BpuMI CCSGG 2 cut(s) 213, 1093
BsaBI GATNNNNATC 2 cut(s) 786, 1275
BsaJI CCNNGG 2 cut(s) 198, 2304
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 9 cut(s) 212, 368, 479, 763, 1065, 1673, 1718, 2348, 2535
Bse118I RCCGGY 1 cut(s) 1023
Bse1I ACTGG 4 cut(s) 143, 568, 2216, 2523
Bse8I GATNNNNATC 2 cut(s) 786, 1275
BseAI TCCGGA 1 cut(s) 148
BseBI CCWGG 3 cut(s) 199, 324, 528
BseDI CCNNGG 2 cut(s) 198, 2304
BseGI GGATG 8 cut(s) 96, 194, 260, 295, 321, 1024, 1522, 1795
BseJI GATNNNNATC 2 cut(s) 786, 1275
BseLI CCNNNNNNNGG 9 cut(s) 212, 368, 479, 763, 1065, 1673, 1718, 2348, 2535
BseMII CTCAG 6 cut(s) 377, 879, 1460, 1901, 1971, 2262
BseNI ACTGG 4 cut(s) 143, 568, 2216, 2523
BseRI GAGGAG 1 cut(s) 1734
BseSI GKGCMC 2 cut(s) 1034, 2296
BseXI GCAGC 9 cut(s) 318, 922, 1067, 1447, 1915, 1918, 1996, 2006, 2009
BseYI CCCAGC 2 cut(s) 630, 1060
BsgI GTGCAG 3 cut(s) 149, 884, 2342
Bsh1236I CGCG 2 cut(s) 1112, 2010
BshFI GGCC 7 cut(s) 52, 526, 1023, 1032, 1622, 1647, 2303
BsiHKAI GWGCWC 2 cut(s) 1306, 2296
BsiSI CCGG 5 cut(s) 149, 213, 757, 1024, 1092
BslFI GGGAC 4 cut(s) 343, 1108, 1735, 2337
BslI CCNNNNNNNGG 9 cut(s) 212, 368, 479, 763, 1065, 1673, 1718, 2348, 2535
BsmAI GTCTC 3 cut(s) 146, 324, 1362
BsmFI GGGAC 4 cut(s) 343, 1108, 1735, 2337
BsnI GGCC 7 cut(s) 52, 526, 1023, 1032, 1622, 1647, 2303
Bsp120I GGGCCC 1 cut(s) 1030
Bsp1286I GDGCHC 4 cut(s) 473, 1034, 1306, 2296
Bsp13I TCCGGA 1 cut(s) 148
Bsp1407I TGTACA 1 cut(s) 2611
Bsp143I GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
Bsp1720I GCTNAGC 1 cut(s) 888
BspACI CCGC 6 cut(s) 22, 490, 938, 1110, 1624, 1716
BspANI GGCC 7 cut(s) 52, 526, 1023, 1032, 1622, 1647, 2303
BspCNI CTCAG 6 cut(s) 378, 880, 1459, 1900, 1972, 2263
BspEI TCCGGA 1 cut(s) 148
BspFNI CGCG 2 cut(s) 1112, 2010
BspHI TCATGA 2 cut(s) 601, 1243
BspLI GGNNCC 8 cut(s) 204, 359, 470, 1031, 1032, 2302, 2353, 2399
BspMAI CTGCAG 1 cut(s) 1509
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 4 cut(s) 1320, 2006, 2036, 2247
BsrFI RCCGGY 1 cut(s) 1023
BsrGI TGTACA 1 cut(s) 2611
BsrI ACTGG 4 cut(s) 143, 568, 2216, 2523
BssAI RCCGGY 1 cut(s) 1023
BssECI CCNNGG 2 cut(s) 198, 2304
BssMI GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
BssSI CACGAG 2 cut(s) 990, 1305
Bst2BI CACGAG 2 cut(s) 990, 1305
Bst2UI CCWGG 3 cut(s) 199, 324, 528
Bst4CI ACNGT 8 cut(s) 86, 1043, 1123, 1232, 1378, 1643, 1749, 2020
Bst6I CTCTTC 1 cut(s) 2322
BstAUI TGTACA 1 cut(s) 2611
BstC8I GCNNGC 3 cut(s) 524, 1624, 2321
BstDEI CTNAG 7 cut(s) 174, 386, 888, 1446, 1887, 1980, 2271
BstENI CCTNNNNNAGG 1 cut(s) 1671
BstF5I GGATG 8 cut(s) 96, 194, 260, 295, 321, 1024, 1522, 1795
BstFNI CGCG 2 cut(s) 1112, 2010
BstHHI GCGC 1 cut(s) 2010
BstKTI GATC 9 cut(s) 163, 478, 784, 1315, 1496, 1976, 2014, 2044, 2242
BstMAI GTCTC 3 cut(s) 146, 324, 1362
BstMBI GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
BstMWI GCNNNNNNNGC 7 cut(s) 107, 898, 1029, 1061, 1883, 2300, 2627
BstNI CCWGG 3 cut(s) 199, 324, 528
BstNSI RCATGY 1 cut(s) 1357
BstSCI CCNGG 5 cut(s) 197, 211, 322, 526, 1091
BstSFI CTRYAG 4 cut(s) 873, 1122, 1173, 1505
BstSLI GKGCMC 2 cut(s) 1034, 2296
BstUI CGCG 2 cut(s) 1112, 2010
BstV1I GCAGC 9 cut(s) 318, 922, 1067, 1447, 1915, 1918, 1996, 2006, 2009
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 3 cut(s) 1312, 1493, 1973
BstYI RGATCY 3 cut(s) 1312, 1493, 1973
BsuI GTATCC 1 cut(s) 1264
BsuRI GGCC 7 cut(s) 52, 526, 1023, 1032, 1622, 1647, 2303
BtgZI GCGATG 2 cut(s) 332, 1127
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 8 cut(s) 96, 194, 260, 295, 321, 1024, 1522, 1795
BtsIMutI CAGTG 4 cut(s) 383, 1648, 1745, 2223
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 3 cut(s) 524, 1624, 2321
CciI TCATGA 2 cut(s) 601, 1243
CfoI GCGC 1 cut(s) 2010
Cfr10I RCCGGY 1 cut(s) 1023
Cfr13I GGNCC 8 cut(s) 50, 357, 1030, 1031, 1073, 1621, 2301, 2351
Csp6I GTAC 4 cut(s) 694, 896, 2526, 2612
CviQI GTAC 4 cut(s) 694, 896, 2526, 2612
DdeI CTNAG 7 cut(s) 174, 386, 888, 1446, 1887, 1980, 2271
DpnI GATC 9 cut(s) 162, 477, 783, 1314, 1495, 1975, 2013, 2043, 2241
DpnII GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
DraI TTTAAA 3 cut(s) 1047, 1935, 2445
EaeI YGGCCR 2 cut(s) 1021, 1645
Eam1104I CTCTTC 1 cut(s) 2322
EarI CTCTTC 1 cut(s) 2322
Eco24I GRGCYC 2 cut(s) 473, 1034
Eco47I GGWCC 3 cut(s) 357, 1073, 2351
EcoNI CCTNNNNNAGG 1 cut(s) 1671
EcoO109I RGGNCCY 2 cut(s) 50, 1030
EcoRI GAATTC 1 cut(s) 1815
EcoRII CCWGG 3 cut(s) 197, 322, 526
EcoT38I GRGCYC 2 cut(s) 473, 1034
FaqI GGGAC 4 cut(s) 343, 1108, 1735, 2337
FauI CCCGC 3 cut(s) 483, 931, 1631
FauNDI CATATG 2 cut(s) 1549, 2632
FblI GTMKAC 1 cut(s) 640
FokI GGATG 8 cut(s) 103, 181, 267, 302, 328, 1031, 1529, 1802
FriOI GRGCYC 2 cut(s) 473, 1034
FspBI CTAG 6 cut(s) 834, 1161, 1581, 1805, 2175, 2622
GlaI GCGC 1 cut(s) 2009
GsaI CCCAGC 2 cut(s) 634, 1064
GsuI CTGGAG 2 cut(s) 457, 481
HaeIII GGCC 7 cut(s) 52, 526, 1023, 1032, 1622, 1647, 2303
HapII CCGG 5 cut(s) 149, 213, 757, 1024, 1092
HhaI GCGC 1 cut(s) 2010
Hin6I GCGC 1 cut(s) 2008
HinP1I GCGC 1 cut(s) 2008
HincII GTYRAC 2 cut(s) 641, 1119
HindII GTYRAC 2 cut(s) 641, 1119
HindIII AAGCTT 2 cut(s) 1630, 2597
HinfI GANTC 5 cut(s) 125, 275, 494, 804, 1096
HpaII CCGG 5 cut(s) 149, 213, 757, 1024, 1092
HphI GGTGA 3 cut(s) 776, 1361, 2234
Hpy166II GTNNAC 5 cut(s) 641, 896, 1119, 1736, 2294
Hpy188I TCNGA 8 cut(s) 799, 1105, 1435, 1498, 1780, 1969, 2205, 2272
Hpy8I GTNNAC 5 cut(s) 641, 896, 1119, 1736, 2294
HpyCH4III ACNGT 8 cut(s) 86, 1043, 1123, 1232, 1378, 1643, 1749, 2020
HpyCH4IV ACGT 2 cut(s) 133, 2430
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 898, 1029, 1061, 1883, 2300, 2627
HpyF3I CTNAG 7 cut(s) 174, 386, 888, 1446, 1887, 1980, 2271
HpySE526I ACGT 2 cut(s) 133, 2430
HspAI GCGC 1 cut(s) 2008
Kpn2I TCCGGA 1 cut(s) 148
Kzo9I GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
LmnI GCTCC 6 cut(s) 414, 438, 468, 2180, 2397, 2437
Lsp1109I GCAGC 9 cut(s) 318, 922, 1067, 1447, 1915, 1918, 1996, 2006, 2009
LweI GCATC 9 cut(s) 55, 245, 560, 646, 776, 1042, 1096, 1780, 2470
MaeI CTAG 6 cut(s) 834, 1161, 1581, 1805, 2175, 2622
MaeII ACGT 2 cut(s) 133, 2430
MaeIII GTNAC 9 cut(s) 134, 381, 1011, 1037, 1349, 1603, 1768, 1890, 2518
MalI GATC 9 cut(s) 162, 477, 783, 1314, 1495, 1975, 2013, 2043, 2241
MboI GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
MboII GAAGA 8 cut(s) 18, 74, 1307, 1583, 2234, 2339, 2512, 2575
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 3 cut(s) 1312, 1493, 1973
MhlI GDGCHC 4 cut(s) 473, 1034, 1306, 2296
MlsI TGGCCA 1 cut(s) 1647
MluNI TGGCCA 1 cut(s) 1647
MlyI GAGTC 2 cut(s) 269, 1090
MmeI TCCRAC 4 cut(s) 68, 353, 1413, 2039
Mox20I TGGCCA 1 cut(s) 1647
MroI TCCGGA 1 cut(s) 148
MscI TGGCCA 1 cut(s) 1647
MseI TTAA 8 cut(s) 704, 1046, 1679, 1934, 2076, 2249, 2444, 2656
MslI CAYNNNNRTG 4 cut(s) 234, 314, 789, 1448
Msp20I TGGCCA 1 cut(s) 1647
MspI CCGG 5 cut(s) 149, 213, 757, 1024, 1092
MspR9I CCNGG 5 cut(s) 199, 213, 324, 528, 1093
MunI CAATTG 1 cut(s) 542
MvaI CCWGG 3 cut(s) 199, 324, 528
MvnI CGCG 2 cut(s) 1112, 2010
MwoI GCNNNNNNNGC 7 cut(s) 107, 898, 1029, 1061, 1883, 2300, 2627
NciI CCSGG 2 cut(s) 213, 1093
NdeI CATATG 2 cut(s) 1549, 2632
NdeII GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
NlaIV GGNNCC 8 cut(s) 204, 359, 470, 1031, 1032, 2302, 2353, 2399
NmeAIII GCCGAG 1 cut(s) 2329
NmuCI GTSAC 7 cut(s) 134, 381, 1011, 1037, 1349, 1768, 2518
NspI RCATGY 1 cut(s) 1357
OliI CACNNNNGTG 2 cut(s) 789, 1448
PagI TCATGA 2 cut(s) 601, 1243
PciI ACATGT 1 cut(s) 1353
PfeI GAWTC 3 cut(s) 125, 494, 804
PflFI GACNNNGTC 2 cut(s) 1099, 1774
PflMI CCANNNNNTGG 2 cut(s) 368, 2348
PleI GAGTC 2 cut(s) 269, 1090
PpsI GAGTC 2 cut(s) 269, 1090
PscI ACATGT 1 cut(s) 1353
Psp6I CCWGG 3 cut(s) 197, 322, 526
PspFI CCCAGC 2 cut(s) 630, 1060
PspGI CCWGG 3 cut(s) 197, 322, 526
PspN4I GGNNCC 8 cut(s) 204, 359, 470, 1031, 1032, 2302, 2353, 2399
PspOMI GGGCCC 1 cut(s) 1030
PspPI GGNCC 8 cut(s) 50, 357, 1030, 1031, 1073, 1621, 2301, 2351
PstI CTGCAG 1 cut(s) 1509
PsuI RGATCY 3 cut(s) 1312, 1493, 1973
PsyI GACNNNGTC 2 cut(s) 1099, 1774
RsaI GTAC 4 cut(s) 695, 897, 2527, 2613
RsaNI GTAC 4 cut(s) 694, 896, 2526, 2612
RseI CAYNNNNRTG 4 cut(s) 234, 314, 789, 1448
SalI GTCGAC 1 cut(s) 639
SaqAI TTAA 8 cut(s) 704, 1046, 1679, 1934, 2076, 2249, 2444, 2656
Sau3AI GATC 9 cut(s) 160, 475, 781, 1312, 1493, 1973, 2011, 2041, 2239
Sau96I GGNCC 8 cut(s) 50, 357, 1030, 1031, 1073, 1621, 2301, 2351
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 2 cut(s) 269, 1090
ScrFI CCNGG 5 cut(s) 199, 213, 324, 528, 1093
SduI GDGCHC 4 cut(s) 473, 1034, 1306, 2296
SfaNI GCATC 9 cut(s) 55, 245, 560, 646, 776, 1042, 1096, 1780, 2470
SfcI CTRYAG 4 cut(s) 873, 1122, 1173, 1505
SfiI GGCCNNNNNGGCC 1 cut(s) 1029
SinI GGWCC 3 cut(s) 357, 1073, 2351
SmiMI CAYNNNNRTG 4 cut(s) 234, 314, 789, 1448
SmlI CTYRAG 2 cut(s) 1425, 1821
SmoI CTYRAG 2 cut(s) 1425, 1821
SpeI ACTAGT 1 cut(s) 1804
SsiI CCGC 6 cut(s) 22, 490, 938, 1110, 1624, 1716
SspI AATATT 2 cut(s) 1138, 2545
SspMI CTAG 6 cut(s) 834, 1161, 1581, 1805, 2175, 2622
StyD4I CCNGG 5 cut(s) 197, 211, 322, 526, 1091
TaaI ACNGT 8 cut(s) 86, 1043, 1123, 1232, 1378, 1643, 1749, 2020
TaiI ACGT 2 cut(s) 136, 2433
TaqI TCGA 6 cut(s) 507, 640, 662, 780, 1325, 2280
TaqII GACCGA 1 cut(s) 345
TatI WGTACW 3 cut(s) 693, 895, 2611
TauI GCSGC 1 cut(s) 1112
TfiI GAWTC 3 cut(s) 125, 494, 804
Tru1I TTAA 8 cut(s) 704, 1046, 1679, 1934, 2076, 2249, 2444, 2656
Tru9I TTAA 8 cut(s) 704, 1046, 1679, 1934, 2076, 2249, 2444, 2656
TscAI CASTG 4 cut(s) 390, 1648, 1752, 2223
TseFI GTSAC 7 cut(s) 134, 381, 1011, 1037, 1349, 1768, 2518
TseI GCWGC 9 cut(s) 306, 935, 1055, 1460, 1906, 1928, 1984, 1994, 1997
Tsp45I GTSAC 7 cut(s) 134, 381, 1011, 1037, 1349, 1768, 2518
TspDTI ATGAA 5 cut(s) 104, 284, 590, 864, 1260
TspGWI ACGGA 1 cut(s) 1531
TspRI CASTG 4 cut(s) 390, 1648, 1752, 2223
Tth111I GACNNNGTC 2 cut(s) 1099, 1774
Van91I CCANNNNNTGG 2 cut(s) 368, 2348
VneI GTGCAC 1 cut(s) 2292
VpaK11BI GGWCC 3 cut(s) 357, 1073, 2351
XagI CCTNNNNNAGG 1 cut(s) 1671
XapI RAATTY 5 cut(s) 531, 926, 1815, 1831, 1936
XceI RCATGY 1 cut(s) 1357
XcmI CCANNNNNNNNNTGG 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 640
XspI CTAG 6 cut(s) 834, 1161, 1581, 1805, 2175, 2622
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.