Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003889

Physical Location & Seq

Genomic Coordinates Forward (+)

22551454 .. 22553990

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGAGGCTTGGCAGCTCAGATTCTATGGGTGCTTTGATTTCCATCTGCCCAACAACAACAGCAGATGAACACAGTCCAAGAAACAACCATGTTTACAGCAGAGACTTCCAGTCCATGCTGGACGGCTTAGACGAAGAAGGGTGCGTGGAAGAGGCCGGCCATGTCGCCGAGAAGAAGCGCCGGCTAAGCGTTGAGCAAGTGAAGGCCTTGGAGAAGAATTTCGAGGTGGAGAACAAGCTTGAGCCAGAGAGAAAAGTGAAGCTTGCCCAAGAGCTTGGTCTTCAACCAAGACAAGTTGCGGTGTGGTTCCAAAACCGCCGAGCTCGTTGGAAAACTAAGCAATTGGAACGCGACTACGGCGTTCTCAAGGCCAACTATGACTCTCTCAAGATCAGCTATGATTCTCTCCAACATGACAATCAAGCTCTTCACAAAGAGATAAAGGAATTGAAAGCGAAGGTCCAAGAAGAGAACACAGAGAGCAATCACTCAGTGAAAGAGGAGCAAATGGTTCTGGCAAAAGAGTCCAGTTACAAAGTGGTAATGGAGCAGAGCAAGCCACAATCTCCTGATACCTCAGGTCCAGTTTCAGAGTCCAAAGAGCTAAACTTTGAGAGCTTCAACAATACCAACTCCAATGGAGCAGTGGGAGTAGAAGTGTCATTGTTCCCTGACTTCAAAGACGGCTCATCGGACAGTGACTCGAGCGCAATCCTAAACGAGGATCATAACAGTCCCAACGGGACTATAAACCACCACCACCAGCTCGTGCCAGCCTCCAATTCACTCAAATTCAACTGCTCTGCCTCATCGTCCTCGCCTTCCTCGTCGTCAATGAATTGCTTCCAGTTCCAGAAGAGTAGTTATCAGCCTCAGTTTGTGAAGATAGAGGAGCACAATTTCTTTAGTAGTGAGGAGGCTTGTAACTTCTTTTCAGATGAGCAAGCTCCCTCACTTCAGTGGTACTGCCCTGATCAATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

329

Amino Acids

37.21

Weight (kDa)

5.31

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	59 - 112	7.1e-17	Homeodomain
HALZ	PF02183	114 - 156	1.8e-19	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09760 AT5G09760
fragaria_vesca	FvH4_1g24090 FvH4_5g14710
malus_domestica	MD02G1238800.v1.1 MD02G1238900.v1.1 MD07G1077900.v1.1 MD07G1078000.v1.1
prunus_persica	Prupe.2G099900_v2.0.a1 Prupe.2G100200_v2.0.a1 Prupe.2G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120271 RchiOBHm_Chr7g0181681
rosa_laevigata	RLG00000005177 RLG00000018546
rosa_multiflora	Rmu_co8370367.1_g000001 Rmu_co8413969.1_g000001 Rmu_sc0000988.1_g000012 Rmu_sc0004523.1_g000012 Rmu_sc0031357.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123580 Rroxscaffold_3G00271810
rosa_rugosa	Rorug02G0228100 Rorug06G0442700
rosa_samantha	Rh2AG284600 Rh2BG295600 Rh2CG273100 Rh2DG309600 Rh7AG045200 Rh7BG044400 Rh7CG045900 Rh7DG044800
rosa_wichuraiana	Rw2G022820 Rw7G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	354
AciI	CCGC	2 cut(s)	302, 319
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	220, 794
AcuI	CTGAAG	1 cut(s)	944
AdeI	CACNNNGTG	1 cut(s)	496
AfaI	GTAC	1 cut(s)	968
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	5 cut(s)	287, 454, 625, 682, 799
AhdI	GACNNNNNGTC	1 cut(s)	112
AleI	CACNNNNGTG	1 cut(s)	961
Alw21I	GWGCWC	2 cut(s)	328, 900
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	735
Ama87I	CYCGRG	1 cut(s)	706
AoxI	GGCC	4 cut(s)	156, 160, 207, 372
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	2 cut(s)	220, 794
Asp700I	GAANNNNTTC	2 cut(s)	221, 845
AspLEI	GCGC	2 cut(s)	183, 713
AspS9I	GGNCC	2 cut(s)	463, 584
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	2 cut(s)	463, 584
AxyI	CCTNAGG	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	328
BauI	CACGAG	1 cut(s)	770
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	328, 900
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	3 cut(s)	142, 376, 703
BclI	TGATCA	1 cut(s)	976
BcoDI	GTCTC	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	1 cut(s)	16
BlpI	GCTNAGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	463, 584
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	463, 584
BmiI	GGNNCC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	3 cut(s)	263, 353, 374
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse118I	RCCGGY	2 cut(s)	158, 183
Bse1I	ACTGG	4 cut(s)	112, 531, 587, 850
Bse21I	CCTNAGG	1 cut(s)	580
Bse8I	GATNNNNATC	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	210
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	4 cut(s)	33, 507, 594, 890
BseNI	ACTGG	4 cut(s)	112, 531, 587, 850
BseRI	GAGGAG	3 cut(s)	518, 908, 932
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	4 cut(s)	158, 162, 209, 374
BsiHKAI	GWGCWC	2 cut(s)	328, 900
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	2 cut(s)	159, 184
BslFI	GGGAC	2 cut(s)	723, 760
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	723, 760
BsnI	GGCC	4 cut(s)	158, 162, 209, 374
BsoBI	CYCGRG	1 cut(s)	706
Bsp1286I	GDGCHC	2 cut(s)	328, 900
Bsp143I	GATC	3 cut(s)	393, 727, 976
Bsp1720I	GCTNAGC	1 cut(s)	188
BspACI	CCGC	2 cut(s)	302, 319
BspANI	GGCC	4 cut(s)	158, 162, 209, 374
BspCNI	CTCAG	4 cut(s)	32, 506, 593, 889
BspFNI	CGCG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	735
BspQI	GCTCTTC	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	158, 183
BsrI	ACTGG	4 cut(s)	112, 531, 587, 850
BssAI	RCCGGY	2 cut(s)	158, 183
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	393, 727, 976
BssSI	CACGAG	1 cut(s)	770
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	770
Bst4CI	ACNGT	3 cut(s)	77, 701, 737
Bst6I	CTCTTC	4 cut(s)	147, 435, 465, 854
BstC8I	GCNNGC	6 cut(s)	160, 185, 267, 560, 777, 948
BstDEI	CTNAG	7 cut(s)	19, 130, 188, 339, 493, 580, 876
BstENI	CCTNNNNNAGG	1 cut(s)	722
BstFNI	CGCG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	183, 713
BstKTI	GATC	3 cut(s)	396, 730, 979
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	3 cut(s)	393, 727, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 360, 559
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	580
BsuRI	GGCC	4 cut(s)	158, 162, 209, 374
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	4 cut(s)	501, 654, 706, 968
Cac8I	GCNNGC	6 cut(s)	160, 185, 267, 560, 777, 948
CfoI	GCGC	2 cut(s)	183, 713
Cfr10I	RCCGGY	2 cut(s)	158, 183
Cfr13I	GGNCC	2 cut(s)	463, 584
Csp6I	GTAC	1 cut(s)	967
CviAII	CATG	4 cut(s)	92, 118, 164, 416
CviQI	GTAC	1 cut(s)	967
DdeI	CTNAG	7 cut(s)	19, 130, 188, 339, 493, 580, 876
DpnI	GATC	3 cut(s)	395, 729, 978
DpnII	GATC	3 cut(s)	393, 727, 976
DraIII	CACNNNGTG	1 cut(s)	496
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	4 cut(s)	147, 435, 465, 854
Eam1105I	GACNNNNNGTC	1 cut(s)	112
EarI	CTCTTC	4 cut(s)	147, 435, 465, 854
Ecl136II	GAGCTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	463, 584
Eco53kI	GAGCTC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	944
Eco81I	CCTNAGG	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	328
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	95, 121, 167, 419
FaiI	YATR	9 cut(s)	29, 93, 119, 165, 381, 402, 417, 732, 752
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	723, 760
FatI	CATG	4 cut(s)	91, 117, 163, 415
FbaI	TGATCA	1 cut(s)	976
Fnu4HI	GCNGC	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	328
FseI	GGCCGGCC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	16
GlaI	GCGC	2 cut(s)	182, 712
GluI	GCNGC	1 cut(s)	16
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	4 cut(s)	158, 162, 209, 374
HapII	CCGG	2 cut(s)	159, 184
HhaI	GCGC	2 cut(s)	183, 713
Hin1II	CATG	4 cut(s)	95, 121, 167, 419
Hin6I	GCGC	2 cut(s)	181, 711
HinP1I	GCGC	2 cut(s)	181, 711
HindIII	AAGCTT	2 cut(s)	239, 263
HinfI	GANTC	6 cut(s)	23, 383, 404, 527, 596, 704
HpaII	CCGG	2 cut(s)	159, 184
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	22, 595, 697, 940
Hpy188III	TCNNGA	3 cut(s)	391, 572, 856
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	835
HpyAV	CCTTC	4 cut(s)	134, 199, 454, 834
HpyCH4III	ACNGT	3 cut(s)	77, 701, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 360, 559
HpyF3I	CTNAG	7 cut(s)	19, 130, 188, 339, 493, 580, 876
Hsp92II	CATG	4 cut(s)	95, 121, 167, 419
HspAI	GCGC	2 cut(s)	181, 711
KroI	GCCGGC	2 cut(s)	158, 183
KroNI	GCCGGC	2 cut(s)	160, 185
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	3 cut(s)	393, 727, 976
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	5 cut(s)	505, 550, 644, 895, 955
Lsp1109I	GCAGC	1 cut(s)	27
MaeIII	GTNAC	3 cut(s)	533, 701, 926
MalI	GATC	3 cut(s)	395, 729, 978
MboI	GATC	3 cut(s)	393, 727, 976
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	328, 900
MluCI	AATT	7 cut(s)	220, 344, 449, 784, 794, 841, 901
MlyI	GAGTC	4 cut(s)	377, 536, 605, 698
MmeI	TCCRAC	2 cut(s)	311, 436
MroNI	GCCGGC	2 cut(s)	158, 183
MroXI	GAANNNNTTC	2 cut(s)	221, 845
MslI	CAYNNNNRTG	1 cut(s)	961
MspI	CCGG	2 cut(s)	159, 184
MunI	CAATTG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	189, 360, 559
NaeI	GCCGGC	2 cut(s)	160, 185
NdeII	GATC	3 cut(s)	393, 727, 976
NgoMIV	GCCGGC	2 cut(s)	158, 183
NlaIII	CATG	4 cut(s)	95, 121, 167, 419
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	2 cut(s)	196, 347
NmuCI	GTSAC	1 cut(s)	701
OliI	CACNNNNGTG	1 cut(s)	961
PaeR7I	CTCGAG	1 cut(s)	706
PceI	AGGCCT	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 827
PdiI	GCCGGC	2 cut(s)	160, 185
PdmI	GAANNNNTTC	2 cut(s)	221, 845
PfeI	GAWTC	2 cut(s)	23, 404
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	4 cut(s)	377, 535, 604, 698
PpsI	GAGTC	4 cut(s)	377, 535, 604, 698
Psp124BI	GAGCTC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	463, 584
PspXI	VCTCGAGB	1 cut(s)	706
RigI	GGCCGGCC	1 cut(s)	162
RsaI	GTAC	1 cut(s)	968
RsaNI	GTAC	1 cut(s)	967
RseI	CAYNNNNRTG	1 cut(s)	961
SacI	GAGCTC	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	435
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	3 cut(s)	393, 727, 976
Sau96I	GGNCC	2 cut(s)	463, 584
SchI	GAGTC	4 cut(s)	377, 536, 605, 698
SduI	GDGCHC	2 cut(s)	328, 900
Sfr274I	CTCGAG	1 cut(s)	706
SinI	GGWCC	2 cut(s)	463, 584
SlaI	CTCGAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	961
SmlI	CTYRAG	4 cut(s)	242, 368, 389, 706
SmoI	CTYRAG	4 cut(s)	242, 368, 389, 706
Sse9I	AATT	7 cut(s)	220, 344, 449, 784, 794, 841, 901
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	302, 319
SstI	GAGCTC	1 cut(s)	328
StuI	AGGCCT	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	77, 701, 737
TaqI	TCGA	2 cut(s)	225, 707
TasI	AATT	7 cut(s)	220, 344, 449, 784, 794, 841, 901
TfiI	GAWTC	2 cut(s)	23, 404
TscAI	CASTG	4 cut(s)	501, 654, 706, 968
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	17, 84, 854
TspRI	CASTG	4 cut(s)	501, 654, 706, 968
VpaK11BI	GGWCC	2 cut(s)	463, 584
XagI	CCTNNNNNAGG	1 cut(s)	722
XapI	RAATTY	2 cut(s)	220, 794
XcmI	CCANNNNNNNNNTGG	2 cut(s)	538, 646
XhoI	CTCGAG	1 cut(s)	706
XmnI	GAANNNNTTC	2 cut(s)	221, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.