Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003889

Physical Location & Seq

Genomic Coordinates Reverse (-)

57459186 .. 57464663

Gene Structure 5478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0442700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTCAGCAGTAGTGGCTTCTGCGTCAGCAGCAGGTGTTGCAGTTGGAGGAGGAGATGTATGGAAGGCACATGCGGCCATGGCTCTGGTTCAGCTCATCAACGGAGGCTATCATGTAATTACCAAAGTAGCCCTCAATGTGGGCATCAACCAGCTTGTCTTTTGTGTCTACAGAGACCTTCTTGCTCTGGTCATTCTTGCTCCAATCGCCTATGTCCGTGAAAAACGGATTCGACAACCAATGAATAGGCGCCTCTTCATGACCTTCTTCTTCCTTGGGCTAACTGGAATTTTTGGCAACCAGCTTTTGTTTCTTCTTGGTCTTGGCTACACAAATCCAACTTACGCTGCGGCCATACAACCTGCTATCCCTGTTTTTACTTTTATCCTGGCAGTACTCATGGGCACAGAAAGAGTGAATTTGCTCAGAGCTGAAGGGCAGGCCAAAGTTTCTGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTCTTATTCCGAGGGCCTGCTTTGATTGGAAGTACAGAACCAGACTTCACATCACAAAGTGAGATAAGTGCCAGAGGTCAACCAGAGCCTGTTGGGTGGTTGATGTCCTCTTTCCTGGAATTTGGACTAGATCATTTCCATATCGGAGTTTTATGCTTAATAGGGAACTGCATGTGCATGGCGGCTTTCCTAGCCATTCAGGCTCCACTTTTGAAAAGATATCCTTCCAATCTGTCAGTCACAGCATATTCATACTTATTTGGTGCTTTATTCATGGTGGTGACTGCATTATTTATGACCAATGAATCAACAGACTGGACGTTGACACAGTCCGAGCTTTTTGCAGTTATTTACGCTGGAATTGTTGCATCTGCCCTTAATTATGGACTCCTGACATGGTGCAATAAGATCTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCAGCCTTTTTGTCAAGAGTTTTCCTAGGGAGCCCTATCTATTTGGGAAGTGTTGCAGGGGGTTTACTAATTATTGCTGGTCTTTATGTGGTCACTTGGGCCTCCTTTAGAGAAAGACAAGCAGCTTTGGGTGTTATACCGCCGATTGCTCGGGTCTCCGAACCTCTCATCCACAAAGATGCAACAATTAACAAGACACCATTCCACAGAGTACACGTTTTACCAAAATCATCGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

396

Amino Acids

42.56

Weight (kDa)

9.12

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 164	8.9e-15	EamA-like transporter family
EamA	PF00892	211 - 348	5e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09760 AT5G09760
fragaria_vesca	FvH4_1g24090 FvH4_5g14710
malus_domestica	MD02G1238800.v1.1 MD02G1238900.v1.1 MD07G1077900.v1.1 MD07G1078000.v1.1
prunus_persica	Prupe.2G099900_v2.0.a1 Prupe.2G100200_v2.0.a1 Prupe.2G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120271 RchiOBHm_Chr7g0181681
rosa_laevigata	RLG00000005177 RLG00000018546
rosa_multiflora	Rmu_co8370367.1_g000001 Rmu_co8413969.1_g000001 Rmu_sc0000988.1_g000012 Rmu_sc0004523.1_g000012 Rmu_sc0031357.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123580 Rroxscaffold_3G00271810
rosa_rugosa	Rorug02G0228100 Rorug06G0442700
rosa_samantha	Rh2AG284600 Rh2BG295600 Rh2CG273100 Rh2DG309600 Rh7AG045200 Rh7BG044400 Rh7CG045900 Rh7DG044800
rosa_wichuraiana	Rw2G022820 Rw7G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	3 cut(s)	23, 370, 949
AccB1I	GGYRCC	2 cut(s)	249, 476
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	4 cut(s)	74, 350, 671, 1088
AcoI	YGGCCR	2 cut(s)	75, 351
AcsI	RAATTY	3 cut(s)	288, 418, 608
AcuI	CTGAAG	2 cut(s)	453, 933
AcyI	GRCGYC	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	4 cut(s)	396, 457, 523, 1161
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	1162
AgsI	TTSAA	2 cut(s)	703, 938
AjnI	CCWGG	2 cut(s)	387, 603
AloI	GAACNNNNNNTCC	2 cut(s)	1101, 1133
AluBI	AGCT	7 cut(s)	94, 154, 304, 431, 826, 947, 1073
AluI	AGCT	7 cut(s)	94, 154, 304, 431, 826, 947, 1073
Alw26I	GTCTC	2 cut(s)	168, 1108
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	1098
AoxI	GGCC	6 cut(s)	75, 351, 441, 503, 905, 1047
ApeKI	GCWGC	4 cut(s)	29, 347, 944, 1070
ApoI	RAATTY	3 cut(s)	288, 418, 608
ArsI	GACNNNNNNTTYG	1 cut(s)	1166
AseI	ATTAAT	1 cut(s)	485
AspA2I	CCTAGG	1 cut(s)	973
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	3 cut(s)	503, 905, 1047
AsuHPI	GGTGA	1 cut(s)	781
AvaI	CYCGRG	1 cut(s)	1098
AvrII	CCTAGG	1 cut(s)	973
BaeGI	GKGCMC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BanI	GGYRCC	2 cut(s)	249, 476
BanII	GRGCYC	1 cut(s)	983
BbvI	GCAGC	4 cut(s)	41, 334, 956, 1082
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	2 cut(s)	389, 605
BcoDI	GTCTC	2 cut(s)	168, 1108
BfaI	CTAG	3 cut(s)	617, 680, 974
BfmI	CTRYAG	2 cut(s)	169, 942
BfoI	RGCGCY	1 cut(s)	253
BfuAI	ACCTGC	3 cut(s)	23, 370, 949
BglI	GCCNNNNNGGC	1 cut(s)	689
BglII	AGATCT	1 cut(s)	897
BisI	GCNGC	7 cut(s)	30, 75, 348, 351, 672, 945, 1071
BlnI	CCTAGG	1 cut(s)	973
BlsI	GCNGC	7 cut(s)	31, 76, 349, 352, 673, 946, 1072
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	2 cut(s)	389, 605
BmeT110I	CYCGRG	1 cut(s)	1098
BmgT120I	GGNCC	3 cut(s)	503, 905, 1047
BmiI	GGNNCC	5 cut(s)	251, 478, 693, 906, 980
BmrFI	CCNGG	2 cut(s)	389, 605
BmsI	GCATC	3 cut(s)	153, 866, 1117
BsaHI	GRCGYC	1 cut(s)	250
BsaI	GGTCTC	2 cut(s)	168, 1108
BsaJI	CCNNGG	4 cut(s)	78, 274, 499, 973
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	289, 809
BseBI	CCWGG	2 cut(s)	389, 605
BseDI	CCNNGG	4 cut(s)	78, 274, 499, 973
BseGI	GGATG	1 cut(s)	1116
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	2 cut(s)	289, 809
BseRI	GAGGAG	2 cut(s)	63, 66
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	4 cut(s)	41, 334, 956, 1082
BshFI	GGCC	6 cut(s)	77, 353, 443, 505, 907, 1049
BshNI	GGYRCC	2 cut(s)	249, 476
BsiHKCI	CYCGRG	1 cut(s)	1098
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	2 cut(s)	168, 1108
BsnI	GGCC	6 cut(s)	77, 353, 443, 505, 907, 1049
Bso31I	GGTCTC	2 cut(s)	168, 1108
BsoBI	CYCGRG	1 cut(s)	1098
Bsp1286I	GDGCHC	2 cut(s)	407, 983
Bsp143I	GATC	2 cut(s)	619, 897
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	4 cut(s)	74, 350, 671, 1088
BspANI	GGCC	6 cut(s)	77, 353, 443, 505, 907, 1049
BspCNI	CTCAG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	5 cut(s)	251, 478, 693, 906, 980
BspMAI	CTGCAG	1 cut(s)	946
BspMI	ACCTGC	3 cut(s)	23, 370, 949
BspT107I	GGYRCC	2 cut(s)	249, 476
BspTNI	GGTCTC	2 cut(s)	168, 1108
BsrI	ACTGG	2 cut(s)	289, 809
BssECI	CCNNGG	4 cut(s)	78, 274, 499, 973
BssMI	GATC	2 cut(s)	619, 897
BssNI	GRCGYC	1 cut(s)	250
BssT1I	CCWWGG	3 cut(s)	78, 274, 973
Bst2UI	CCWGG	2 cut(s)	389, 605
Bst4CI	ACNGT	1 cut(s)	819
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	441, 507, 909
BstDEI	CTNAG	1 cut(s)	425
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	1116
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	622, 900
BstMAI	GTCTC	2 cut(s)	168, 1108
BstMBI	GATC	2 cut(s)	619, 897
BstNI	CCWGG	2 cut(s)	389, 605
BstNSI	RCATGY	2 cut(s)	74, 664
BstSCI	CCNGG	2 cut(s)	387, 603
BstSFI	CTRYAG	2 cut(s)	169, 942
BstSLI	GKGCMC	1 cut(s)	407
BstV1I	GCAGC	4 cut(s)	41, 334, 956, 1082
BstX2I	RGATCY	1 cut(s)	897
BstXI	CCANNNNNNTGG	2 cut(s)	85, 487
BstYI	RGATCY	1 cut(s)	897
BsuRI	GGCC	6 cut(s)	77, 353, 443, 505, 907, 1049
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	1116
BveI	ACCTGC	3 cut(s)	23, 370, 949
Cac8I	GCNNGC	3 cut(s)	441, 507, 909
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	3 cut(s)	503, 905, 1047
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	4 cut(s)	395, 456, 522, 1160
CviAII	CATG	9 cut(s)	71, 79, 113, 259, 400, 661, 667, 763, 885
CviQI	GTAC	4 cut(s)	395, 456, 522, 1160
DdeI	CTNAG	1 cut(s)	425
DinI	GGCGCC	1 cut(s)	251
DpnI	GATC	2 cut(s)	621, 899
DpnII	GATC	2 cut(s)	619, 897
DraIII	CACNNNGTG	1 cut(s)	548
EaeI	YGGCCR	2 cut(s)	75, 351
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	3 cut(s)	78, 274, 973
Eco24I	GRGCYC	1 cut(s)	983
Eco31I	GGTCTC	2 cut(s)	168, 1108
Eco32I	GATATC	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	453, 933
Eco88I	CYCGRG	1 cut(s)	1098
EcoO109I	RGGNCCY	2 cut(s)	503, 905
EcoRII	CCWGG	2 cut(s)	387, 603
EcoRV	GATATC	1 cut(s)	710
EcoT14I	CCWWGG	3 cut(s)	78, 274, 973
EcoT38I	GRGCYC	1 cut(s)	983
EgeI	GGCGCC	1 cut(s)	251
EheI	GGCGCC	1 cut(s)	251
ErhI	CCWWGG	3 cut(s)	78, 274, 973
FaeI	CATG	9 cut(s)	74, 82, 116, 262, 403, 664, 670, 766, 888
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FatI	CATG	9 cut(s)	70, 78, 112, 258, 399, 660, 666, 762, 884
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	7 cut(s)	30, 75, 348, 351, 672, 945, 1071
FokI	GGATG	1 cut(s)	1103
FriOI	GRGCYC	1 cut(s)	983
Fsp4HI	GCNGC	7 cut(s)	30, 75, 348, 351, 672, 945, 1071
FspBI	CTAG	3 cut(s)	617, 680, 974
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	7 cut(s)	30, 75, 348, 351, 672, 945, 1071
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	6 cut(s)	77, 353, 443, 505, 907, 1049
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	9 cut(s)	74, 82, 116, 262, 403, 664, 670, 766, 888
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HincII	GTYRAC	2 cut(s)	569, 813
HindII	GTYRAC	2 cut(s)	569, 813
HinfI	GANTC	3 cut(s)	229, 794, 876
HphI	GGTGA	1 cut(s)	781
Hpy166II	GTNNAC	6 cut(s)	169, 458, 569, 813, 1013, 1162
Hpy188I	TCNGA	6 cut(s)	428, 500, 635, 823, 1108, 1186
Hpy188III	TCNNGA	3 cut(s)	259, 880, 963
Hpy8I	GTNNAC	6 cut(s)	169, 458, 569, 813, 1013, 1162
HpyAV	CCTTC	5 cut(s)	58, 188, 274, 428, 723
HpyCH4III	ACNGT	1 cut(s)	819
HpyCH4IV	ACGT	2 cut(s)	809, 1164
HpyF3I	CTNAG	1 cut(s)	425
HpySE526I	ACGT	2 cut(s)	809, 1164
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	9 cut(s)	74, 82, 116, 262, 403, 664, 670, 766, 888
HspAI	GCGC	1 cut(s)	250
KasI	GGCGCC	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	619, 897
LmnI	GCTCC	3 cut(s)	205, 697, 978
Lsp1109I	GCAGC	4 cut(s)	41, 334, 956, 1082
LweI	GCATC	3 cut(s)	153, 866, 1117
MaeI	CTAG	3 cut(s)	617, 680, 974
MaeII	ACGT	2 cut(s)	809, 1164
MaeIII	GTNAC	3 cut(s)	727, 769, 1039
MalI	GATC	2 cut(s)	621, 899
MboI	GATC	2 cut(s)	619, 897
MboII	GAAGA	4 cut(s)	247, 259, 262, 305
MflI	RGATCY	1 cut(s)	897
MhlI	GDGCHC	2 cut(s)	407, 983
MluCI	AATT	8 cut(s)	117, 288, 418, 608, 849, 868, 1017, 1134
Mly113I	GGCGCC	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	870
MmeI	TCCRAC	2 cut(s)	25, 362
MseI	TTAA	5 cut(s)	485, 647, 867, 1137, 1189
MslI	CAYNNNNRTG	5 cut(s)	463, 485, 665, 767, 1125
MspR9I	CCNGG	2 cut(s)	389, 605
MvaI	CCWGG	2 cut(s)	389, 605
NarI	GGCGCC	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	619, 897
NlaIII	CATG	9 cut(s)	74, 82, 116, 262, 403, 664, 670, 766, 888
NlaIV	GGNNCC	5 cut(s)	251, 478, 693, 906, 980
NmuCI	GTSAC	3 cut(s)	727, 769, 1039
NspI	RCATGY	2 cut(s)	74, 664
PagI	TCATGA	1 cut(s)	258
PaqCI	CACCTGC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	229, 794
PflFI	GACNNNGTC	1 cut(s)	817
PfoI	TCCNGGA	1 cut(s)	603
PkrI	GCNGC	7 cut(s)	31, 76, 349, 352, 673, 946, 1072
PleI	GAGTC	1 cut(s)	870
PluTI	GGCGCC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	870
PshBI	ATTAAT	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	387, 603
PspGI	CCWGG	2 cut(s)	387, 603
PspN4I	GGNNCC	5 cut(s)	251, 478, 693, 906, 980
PspPI	GGNCC	3 cut(s)	503, 905, 1047
PstI	CTGCAG	1 cut(s)	946
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	897
PsyI	GACNNNGTC	1 cut(s)	817
RsaI	GTAC	4 cut(s)	396, 457, 523, 1161
RsaNI	GTAC	4 cut(s)	395, 456, 522, 1160
RseI	CAYNNNNRTG	5 cut(s)	463, 485, 665, 767, 1125
SaqAI	TTAA	5 cut(s)	485, 647, 867, 1137, 1189
SatI	GCNGC	7 cut(s)	30, 75, 348, 351, 672, 945, 1071
Sau3AI	GATC	2 cut(s)	619, 897
Sau96I	GGNCC	3 cut(s)	503, 905, 1047
ScaI	AGTACT	1 cut(s)	396
SchI	GAGTC	1 cut(s)	870
ScrFI	CCNGG	2 cut(s)	389, 605
SduI	GDGCHC	2 cut(s)	407, 983
SfaNI	GCATC	3 cut(s)	153, 866, 1117
SfcI	CTRYAG	2 cut(s)	169, 942
SfoI	GGCGCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	5 cut(s)	463, 485, 665, 767, 1125
Sse9I	AATT	8 cut(s)	117, 288, 418, 608, 849, 868, 1017, 1134
SsiI	CCGC	4 cut(s)	74, 350, 671, 1088
SspDI	GGCGCC	1 cut(s)	249
SspMI	CTAG	3 cut(s)	617, 680, 974
StyD4I	CCNGG	2 cut(s)	387, 603
StyI	CCWWGG	3 cut(s)	78, 274, 973
TaaI	ACNGT	1 cut(s)	819
TaiI	ACGT	2 cut(s)	812, 1167
TaqI	TCGA	1 cut(s)	232
TasI	AATT	8 cut(s)	117, 288, 418, 608, 849, 868, 1017, 1134
TatI	WGTACW	3 cut(s)	394, 521, 1159
TauI	GCSGC	3 cut(s)	77, 353, 674
TfiI	GAWTC	2 cut(s)	229, 794
Tru1I	TTAA	5 cut(s)	485, 647, 867, 1137, 1189
Tru9I	TTAA	5 cut(s)	485, 647, 867, 1137, 1189
TseFI	GTSAC	3 cut(s)	727, 769, 1039
TseI	GCWGC	4 cut(s)	29, 347, 944, 1070
Tsp45I	GTSAC	3 cut(s)	727, 769, 1039
TspDTI	ATGAA	5 cut(s)	247, 257, 729, 751, 807
TspGWI	ACGGA	3 cut(s)	117, 206, 241
Tth111I	GACNNNGTC	1 cut(s)	817
VspI	ATTAAT	1 cut(s)	485
XapI	RAATTY	3 cut(s)	288, 418, 608
XceI	RCATGY	2 cut(s)	74, 664
XmaJI	CCTAGG	1 cut(s)	973
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	3 cut(s)	617, 680, 974
ZrmI	AGTACT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.