Rmu_sc0031357.1_g000001

pectinesterase pectinesterase inhibitor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031357.1
Physical Location & Seq
Forward (+)
1042 .. 2079
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031357.1_g000001.1.cds

Sequence Viewer

Length: 1038 bp
atggcctccttcgtcttcctctccctcctaaccctcactctcttcctctccctctcctccgccgcccgccaccgccacccttccgccaccgccgccgccgtcactcagatccaactcgcctgcaaagccacccgcttccccgacacgtgtcaatcctccctcgcccagctccctgaccttcctccgaacccgaccccaatcgagaccatcgggctagccatccgggtctcctccgatgggctcaagtcggcccagaaaatggtgacggacattcgagaagcgtccaaggggaaccagaaccgcaccctcgccgcgaataactgcctcgaggttctgagcaactccgagtaccgcatttcgcgggcgacggaggagctctcacgtgggcggaccaagagcgcacgtgccgccttcagcgccgccctgctctaccagtacgactgctggtcgggcctcaagtacgccaacgacacccagatggtcaaccaaacgatgtcgtttctcgacgggctgcaaagcaggtccagcaacgccctcagcatgatgttctcctacgaccactacggcgacgacaccagccagtgggcccctccgaagaccgagcgtgacgggttctgggagcgggggtcgggttcgggtccgggtttctcgggcggcgtgccgaagaatctgaaggcggacacgacggtgtgtaaggaggggtgtgagtaccggacggtgcaggaggcggtggacaaggcgccggagaatttggaggcagggaagaggttcgtgattcagataaagacgggggtgtacgaggagacggtgagggtggccttagggaagcggaacctggtgttcttgggcgacgggatgggcaagacggtaattaccggttcgttgaatgtgggccagcccggaatctccacctacaatacggccacagtcggtaggttactgtttccatttcttcatgtctcattcatgcaatttgcactattatttcattacattgcatgcttgcgcgtgctaggtcacgtgcatggttgcatctaa

Protein Analysis

345

Amino Acids

37.61

Weight (kDa)

8.86

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 326
Acc36I ACCTGC 1 cut(s) 510
AccB1I GGYRCC 1 cut(s) 739
AccB7I CCANNNNNTGG 2 cut(s) 259, 582
AccBSI CCGCTC 1 cut(s) 622
AccII CGCG 3 cut(s) 314, 361, 1008
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 1 cut(s) 748
AcuI CTGAAG 2 cut(s) 397, 692
AcvI CACGTG 4 cut(s) 147, 383, 404, 1021
AcyI GRCGYC 1 cut(s) 740
AfaI GTAC 5 cut(s) 350, 437, 461, 710, 797
AfiI CCNNNNNNNGG 3 cut(s) 237, 259, 582
AflIII ACRYGT 2 cut(s) 144, 146
AgeI ACCGGT 1 cut(s) 875
AgsI TTSAA 1 cut(s) 886
AhdI GACNNNNNGTC 1 cut(s) 445
AjnI CCWGG 1 cut(s) 834
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 2 cut(s) 169, 376
AluI AGCT 2 cut(s) 169, 376
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 4 cut(s) 197, 232, 797, 964
AlwI GGATC 1 cut(s) 103
Ama87I CYCGRG 2 cut(s) 326, 649
AoxI GGCC 7 cut(s) 3, 249, 451, 585, 816, 892, 921
ApaI GGGCCC 1 cut(s) 589
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 748
AsiGI ACCGGT 1 cut(s) 875
Asp700I GAANNNNTTC 1 cut(s) 767
AspLEI GCGC 4 cut(s) 401, 419, 742, 1008
AspS9I GGNCC 8 cut(s) 250, 390, 451, 522, 585, 586, 638, 892
AsuC2I CCSGG 3 cut(s) 224, 642, 900
AsuHPI GGTGA 2 cut(s) 274, 820
AsuNHI GCTAGC 1 cut(s) 214
AvaI CYCGRG 2 cut(s) 326, 649
AvaII GGWCC 3 cut(s) 390, 522, 638
AxyI CCTNAGG 1 cut(s) 820
BaeGI GKGCMC 1 cut(s) 589
BanI GGYRCC 1 cut(s) 739
BanII GRGCYC 3 cut(s) 243, 378, 589
BbrPI CACGTG 4 cut(s) 147, 383, 404, 1021
BbsI GAAGAC 2 cut(s) 7, 602
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 1 cut(s) 498
BccI CCATC 5 cut(s) 215, 227, 230, 472, 850
BceAI ACGGC 3 cut(s) 83, 580, 936
BciT130I CCWGG 1 cut(s) 836
BcnI CCSGG 3 cut(s) 224, 642, 900
BcoDI GTCTC 4 cut(s) 197, 232, 797, 964
BfaI CTAG 2 cut(s) 215, 1013
BfoI RGCGCY 2 cut(s) 420, 743
BfuAI ACCTGC 1 cut(s) 510
BisI GCNGC 8 cut(s) 63, 93, 96, 312, 408, 420, 512, 655
BlsI GCNGC 8 cut(s) 64, 94, 97, 313, 409, 421, 513, 656
Bme1390I CCNGG 4 cut(s) 224, 642, 836, 900
Bme18I GGWCC 3 cut(s) 390, 522, 638
BmeRI GACNNNNNGTC 1 cut(s) 445
BmeT110I CYCGRG 2 cut(s) 326, 649
BmgT120I GGNCC 8 cut(s) 250, 390, 451, 522, 585, 586, 638, 892
BmiI GGNNCC 6 cut(s) 293, 587, 588, 639, 741, 833
BmrFI CCNGG 4 cut(s) 224, 642, 836, 900
BmtI GCTAGC 1 cut(s) 218
BoxI GACNNNNGTC 1 cut(s) 147
BpiI GAAGAC 2 cut(s) 7, 602
BplI GAGNNNNNCTC 2 cut(s) 362, 394
Bpu10I CCTNAGC 1 cut(s) 536
BpuEI CTTGAG 2 cut(s) 227, 440
BpuMI CCSGG 3 cut(s) 224, 642, 900
BsaAI YACGTR 4 cut(s) 147, 383, 404, 1021
BsaHI GRCGYC 1 cut(s) 740
BsaI GGTCTC 2 cut(s) 197, 232
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 2 cut(s) 711, 875
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 259, 582
Bse118I RCCGGY 1 cut(s) 875
Bse1I ACTGG 2 cut(s) 433, 580
Bse21I CCTNAGG 1 cut(s) 820
Bse3DI GCAATG 1 cut(s) 993
BseBI CCWGG 1 cut(s) 836
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 219, 861
BseLI CCNNNNNNNGG 3 cut(s) 237, 259, 582
BseMI GCAATG 1 cut(s) 993
BseMII CTCAG 3 cut(s) 119, 326, 550
BseNI ACTGG 2 cut(s) 433, 580
BseRI GAGGAG 4 cut(s) 46, 220, 386, 815
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 1 cut(s) 498
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 3 cut(s) 314, 361, 1008
BshFI GGCC 7 cut(s) 5, 251, 453, 587, 818, 894, 923
BshNI GGYRCC 1 cut(s) 739
BshTI ACCGGT 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 326, 649
BsiSI CCGG 6 cut(s) 223, 641, 712, 743, 876, 900
BslI CCNNNNNNNGG 3 cut(s) 237, 259, 582
BsmAI GTCTC 4 cut(s) 197, 232, 797, 964
BsmBI CGTCTC 1 cut(s) 797
BsnI GGCC 7 cut(s) 5, 251, 453, 587, 818, 894, 923
Bso31I GGTCTC 2 cut(s) 197, 232
BsoBI CYCGRG 2 cut(s) 326, 649
Bsp120I GGGCCC 1 cut(s) 585
Bsp1286I GDGCHC 3 cut(s) 243, 378, 589
Bsp143I GATC 1 cut(s) 108
BspANI GGCC 7 cut(s) 5, 251, 453, 587, 818, 894, 923
BspCNI CTCAG 3 cut(s) 118, 327, 549
BspFNI CGCG 3 cut(s) 314, 361, 1008
BspLI GGNNCC 6 cut(s) 293, 587, 588, 639, 741, 833
BspMI ACCTGC 1 cut(s) 510
BspOI GCTAGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 739
BspTNI GGTCTC 2 cut(s) 197, 232
BsrBI CCGCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 993
BsrFI RCCGGY 1 cut(s) 875
BsrI ACTGG 2 cut(s) 433, 580
BssAI RCCGGY 1 cut(s) 875
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 740
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 836
Bst4CI ACNGT 6 cut(s) 688, 718, 808, 868, 928, 942
Bst6I CTCTTC 2 cut(s) 47, 758
BstACI GRCGYC 1 cut(s) 740
BstBAI YACGTR 4 cut(s) 147, 383, 404, 1021
BstC8I GCNNGC 9 cut(s) 67, 121, 216, 363, 659, 896, 1000, 1004, 1010
BstDEI CTNAG 4 cut(s) 105, 335, 536, 820
BstF5I GGATG 2 cut(s) 219, 861
BstFNI CGCG 3 cut(s) 314, 361, 1008
BstH2I RGCGCY 2 cut(s) 420, 743
BstHHI GCGC 4 cut(s) 401, 419, 742, 1008
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 4 cut(s) 197, 232, 797, 964
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 6 cut(s) 92, 125, 407, 416, 450, 525
BstNI CCWGG 1 cut(s) 836
BstNSI RCATGY 1 cut(s) 1002
BstPAI GACNNNNGTC 1 cut(s) 147
BstSCI CCNGG 4 cut(s) 222, 640, 834, 898
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 3 cut(s) 314, 361, 1008
BstV1I GCAGC 1 cut(s) 498
BstV2I GAAGAC 2 cut(s) 7, 602
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
Bsu36I CCTNAGG 1 cut(s) 820
BsuRI GGCC 7 cut(s) 5, 251, 453, 587, 818, 894, 923
BtsCI GGATG 2 cut(s) 219, 861
BtsIMutI CAGTG 1 cut(s) 587
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 9 cut(s) 67, 121, 216, 363, 659, 896, 1000, 1004, 1010
CfoI GCGC 4 cut(s) 401, 419, 742, 1008
Cfr10I RCCGGY 1 cut(s) 875
Cfr13I GGNCC 8 cut(s) 250, 390, 451, 522, 585, 586, 638, 892
CseI GACGC 1 cut(s) 270
CsiI ACCWGGT 1 cut(s) 834
Csp6I GTAC 5 cut(s) 349, 436, 460, 709, 796
CspAI ACCGGT 1 cut(s) 875
CviAII CATG 5 cut(s) 541, 956, 967, 999, 1025
CviQI GTAC 5 cut(s) 349, 436, 460, 709, 796
DdeI CTNAG 4 cut(s) 105, 335, 536, 820
DinI GGCGCC 1 cut(s) 741
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
DriI GACNNNNNGTC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 2 cut(s) 47, 758
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 2 cut(s) 47, 758
EciI GGCGGA 4 cut(s) 49, 73, 403, 692
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 3 cut(s) 243, 378, 589
Eco31I GGTCTC 2 cut(s) 197, 232
Eco47I GGWCC 3 cut(s) 390, 522, 638
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 397, 692
Eco72I CACGTG 4 cut(s) 147, 383, 404, 1021
Eco81I CCTNAGG 1 cut(s) 820
Eco88I CYCGRG 2 cut(s) 326, 649
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 834
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 3 cut(s) 243, 378, 589
EgeI GGCGCC 1 cut(s) 741
EheI GGCGCC 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 5 cut(s) 544, 959, 970, 1002, 1028
FaiI YATR 5 cut(s) 542, 957, 968, 1000, 1026
FatI CATG 5 cut(s) 540, 955, 966, 998, 1024
FauI CCCGC 4 cut(s) 74, 140, 354, 615
Fnu4HI GCNGC 8 cut(s) 63, 93, 96, 312, 408, 420, 512, 655
FokI GGATG 2 cut(s) 206, 868
FriOI GRGCYC 3 cut(s) 243, 378, 589
Fsp4HI GCNGC 8 cut(s) 63, 93, 96, 312, 408, 420, 512, 655
FspBI CTAG 2 cut(s) 215, 1013
GlaI GCGC 4 cut(s) 400, 418, 741, 1007
GluI GCNGC 8 cut(s) 63, 93, 96, 312, 408, 420, 512, 655
GsaI CCCAGC 1 cut(s) 169
HaeII RGCGCY 2 cut(s) 420, 743
HaeIII GGCC 7 cut(s) 5, 251, 453, 587, 818, 894, 923
HapII CCGG 6 cut(s) 223, 641, 712, 743, 876, 900
HgaI GACGC 1 cut(s) 270
HhaI GCGC 4 cut(s) 401, 419, 742, 1008
Hin1I GRCGYC 1 cut(s) 740
Hin1II CATG 5 cut(s) 544, 959, 970, 1002, 1028
Hin6I GCGC 4 cut(s) 399, 417, 740, 1006
HinP1I GCGC 4 cut(s) 399, 417, 740, 1006
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 3 cut(s) 667, 775, 903
HpaII CCGG 6 cut(s) 223, 641, 712, 743, 876, 900
HphI GGTGA 2 cut(s) 274, 820
Hpy166II GTNNAC 3 cut(s) 484, 733, 796
Hpy188I TCNGA 8 cut(s) 108, 186, 235, 336, 346, 594, 672, 780
Hpy188III TCNNGA 4 cut(s) 202, 275, 503, 772
Hpy8I GTNNAC 3 cut(s) 484, 733, 796
Hpy99I CGWCG 5 cut(s) 370, 509, 572, 688, 854
HpyAV CCTTC 5 cut(s) 19, 90, 188, 421, 667
HpyCH4III ACNGT 6 cut(s) 688, 718, 808, 868, 928, 942
HpyCH4IV ACGT 4 cut(s) 146, 382, 403, 1020
HpyCH4V TGCA 8 cut(s) 123, 514, 721, 970, 977, 998, 1024, 1032
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 125, 407, 416, 450, 525
HpyF3I CTNAG 4 cut(s) 105, 335, 536, 820
HpySE526I ACGT 4 cut(s) 146, 382, 403, 1020
Hsp92I GRCGYC 1 cut(s) 740
Hsp92II CATG 5 cut(s) 544, 959, 970, 1002, 1028
HspAI GCGC 4 cut(s) 399, 417, 740, 1006
KasI GGCGCC 1 cut(s) 739
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 3 cut(s) 174, 373, 619
Lsp1109I GCAGC 1 cut(s) 498
MabI ACCWGGT 1 cut(s) 834
MaeI CTAG 2 cut(s) 215, 1013
MaeII ACGT 4 cut(s) 146, 382, 403, 1020
MaeIII GTNAC 5 cut(s) 100, 262, 605, 936, 1016
MalI GATC 1 cut(s) 110
MbiI CCGCTC 1 cut(s) 622
MboI GATC 1 cut(s) 108
MboII GAAGA 6 cut(s) 7, 34, 607, 676, 775, 944
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 3 cut(s) 243, 378, 589
MluCI AATT 3 cut(s) 748, 870, 971
Mly113I GGCGCC 1 cut(s) 740
MmeI TCCRAC 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 767
MslI CAYNNNNRTG 3 cut(s) 476, 686, 1023
MspI CCGG 6 cut(s) 223, 641, 712, 743, 876, 900
MspR9I CCNGG 4 cut(s) 224, 642, 836, 900
MvaI CCWGG 1 cut(s) 836
MvnI CGCG 3 cut(s) 314, 361, 1008
MwoI GCNNNNNNNGC 6 cut(s) 92, 125, 407, 416, 450, 525
NarI GGCGCC 1 cut(s) 740
NciI CCSGG 3 cut(s) 224, 642, 900
NdeII GATC 1 cut(s) 108
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 5 cut(s) 544, 959, 970, 1002, 1028
NlaIV GGNNCC 6 cut(s) 293, 587, 588, 639, 741, 833
NmuCI GTSAC 4 cut(s) 100, 262, 605, 1016
NspI RCATGY 1 cut(s) 1002
OliI CACNNNNGTG 1 cut(s) 686
PaeI GCATGC 1 cut(s) 1002
PaeR7I CTCGAG 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 3 cut(s) 667, 775, 903
PflMI CCANNNNNTGG 2 cut(s) 259, 582
PinAI ACCGGT 1 cut(s) 875
PkrI GCNGC 8 cut(s) 64, 94, 97, 313, 409, 421, 513, 656
PluTI GGCGCC 1 cut(s) 743
PmaCI CACGTG 4 cut(s) 147, 383, 404, 1021
PmlI CACGTG 4 cut(s) 147, 383, 404, 1021
Ppu21I YACGTR 4 cut(s) 147, 383, 404, 1021
PshAI GACNNNNGTC 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 834
PspCI CACGTG 4 cut(s) 147, 383, 404, 1021
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 834
PspN4I GGNNCC 6 cut(s) 293, 587, 588, 639, 741, 833
PspOMI GGGCCC 1 cut(s) 585
PspPI GGNCC 8 cut(s) 250, 390, 451, 522, 585, 586, 638, 892
PspXI VCTCGAGB 1 cut(s) 326
PsuI RGATCY 1 cut(s) 108
RsaI GTAC 5 cut(s) 350, 437, 461, 710, 797
RsaNI GTAC 5 cut(s) 349, 436, 460, 709, 796
RseI CAYNNNNRTG 3 cut(s) 476, 686, 1023
SacI GAGCTC 1 cut(s) 378
SatI GCNGC 8 cut(s) 63, 93, 96, 312, 408, 420, 512, 655
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 8 cut(s) 250, 390, 451, 522, 585, 586, 638, 892
ScrFI CCNGG 4 cut(s) 224, 642, 836, 900
SduI GDGCHC 3 cut(s) 243, 378, 589
SexAI ACCWGGT 1 cut(s) 834
SfoI GGCGCC 1 cut(s) 741
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 3 cut(s) 390, 522, 638
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 3 cut(s) 476, 686, 1023
SmlI CTYRAG 3 cut(s) 242, 326, 455
SmoI CTYRAG 3 cut(s) 242, 326, 455
SphI GCATGC 1 cut(s) 1002
Sse9I AATT 3 cut(s) 748, 870, 971
SspDI GGCGCC 1 cut(s) 739
SspMI CTAG 2 cut(s) 215, 1013
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 4 cut(s) 222, 640, 834, 898
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 6 cut(s) 688, 718, 808, 868, 928, 942
TaiI ACGT 4 cut(s) 149, 385, 406, 1023
TaqI TCGA 4 cut(s) 201, 274, 327, 504
TaqII GACCGA 1 cut(s) 614
TasI AATT 3 cut(s) 748, 870, 971
TauI GCSGC 7 cut(s) 65, 95, 98, 314, 410, 422, 657
TfiI GAWTC 3 cut(s) 667, 775, 903
TscAI CASTG 1 cut(s) 587
TseFI GTSAC 4 cut(s) 100, 262, 605, 1016
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 4 cut(s) 100, 262, 605, 1016
TspDTI ATGAA 3 cut(s) 944, 955, 977
TspGWI ACGGA 2 cut(s) 281, 383
TspRI CASTG 1 cut(s) 587
Van91I CCANNNNNTGG 2 cut(s) 259, 582
VpaK11BI GGWCC 3 cut(s) 390, 522, 638
XapI RAATTY 1 cut(s) 748
XceI RCATGY 1 cut(s) 1002
XhoI CTCGAG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 2 cut(s) 215, 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.