Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413969.1

Orthogroup ID

OG0003889

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1129

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 683 bp

gagttcttggtgatgggttcatggccagtggtctcacaattgcaaacacagcaggccctgatgcccaccaggcagtggctttccgatcagacagcgatctatccgtgatcgagaactgtgaattcttaggaaatcaggacactctatatgcacatggcaaccgtcagctatacaaatcgtgcaaaatccaaggcaatgtggatttcatcttcggaaactcagctgccattttccaggactgcaacatcctcgttgctccccgacaactcaatcccgagaagggcgaaaacaatgccatcacagcccatggcaggacagaccctgcacagtcaaccggtttcgtttttcaaaattgcttgatcaacggaaccgaagagtacatgaaattgtattacagcaaaccccgagtgcacaaaaactacttggggaggccgtggaaggagtattcaaggacggttttcttaaattgcaatatggaagctctggttaccgcgcaggggtggctgccttggagtggggattttgctttgaagacacttttctatggggagtacgggaatacaggaacaggttcgaatttggaccagagagtgacctggagtagcaagattccgaccgagcatgttagtacatattcagtgcagaattttattcagggagatgagtggatggagaccatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

226

Amino Acids

25.22

Weight (kDa)

5.34

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09760 AT5G09760
fragaria_vesca	FvH4_1g24090 FvH4_5g14710
malus_domestica	MD02G1238800.v1.1 MD02G1238900.v1.1 MD07G1077900.v1.1 MD07G1078000.v1.1
prunus_persica	Prupe.2G099900_v2.0.a1 Prupe.2G100200_v2.0.a1 Prupe.2G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120271 RchiOBHm_Chr7g0181681
rosa_laevigata	RLG00000005177 RLG00000018546
rosa_multiflora	Rmu_co8370367.1_g000001 Rmu_co8413969.1_g000001 Rmu_sc0000988.1_g000012 Rmu_sc0004523.1_g000012 Rmu_sc0031357.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123580 Rroxscaffold_3G00271810
rosa_rugosa	Rorug02G0228100 Rorug06G0442700
rosa_samantha	Rh2AG284600 Rh2BG295600 Rh2CG273100 Rh2DG309600 Rh7AG045200 Rh7BG044400 Rh7CG045900 Rh7DG044800
rosa_wichuraiana	Rw2G022820 Rw7G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccII	CGCG	1 cut(s)	493
AciI	CCGC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	3 cut(s)	121, 576, 645
AfaI	GTAC	3 cut(s)	379, 553, 630
AfiI	CCNNNNNNNGG	5 cut(s)	75, 280, 311, 497, 514
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	349, 449, 531
AjnI	CCWGG	3 cut(s)	68, 233, 595
AluBI	AGCT	3 cut(s)	168, 223, 481
AluI	AGCT	3 cut(s)	168, 223, 481
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	37, 667
Alw44I	GTGCAC	1 cut(s)	409
AlwNI	CAGNNNCTG	2 cut(s)	58, 322
Ama87I	CYCGRG	2 cut(s)	274, 404
AoxI	GGCC	3 cut(s)	23, 54, 430
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	223, 504
ApoI	RAATTY	3 cut(s)	121, 576, 645
AsiGI	ACCGGT	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	55, 582
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	574
AvaI	CYCGRG	2 cut(s)	274, 404
AvaII	GGWCC	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	210, 491
BccI	CCATC	3 cut(s)	7, 304, 663
BceAI	ACGGC	1 cut(s)	417
BcgI	CGANNNNNNTGC	4 cut(s)	231, 265, 274, 308
BciT130I	CCWGG	3 cut(s)	70, 235, 597
BclI	TGATCA	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	37, 667
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	224, 505
BlsI	GCNGC	2 cut(s)	225, 506
Bme1390I	CCNGG	3 cut(s)	70, 235, 597
Bme18I	GGWCC	1 cut(s)	582
BmeT110I	CYCGRG	2 cut(s)	274, 404
BmgT120I	GGNCC	2 cut(s)	55, 582
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	3 cut(s)	70, 235, 597
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	618
Bpu14I	TTCGAA	1 cut(s)	574
BsaI	GGTCTC	2 cut(s)	37, 667
BsaJI	CCNNGG	4 cut(s)	189, 306, 433, 508
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 280, 311, 497, 514
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	3 cut(s)	70, 235, 597
BseDI	CCNNGG	4 cut(s)	189, 306, 433, 508
BseGI	GGATG	2 cut(s)	245, 674
BseLI	CCNNNNNNNGG	5 cut(s)	75, 280, 311, 497, 514
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	210, 491
BsgI	GTGCAG	2 cut(s)	308, 661
Bsh1236I	CGCG	1 cut(s)	493
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	3 cut(s)	25, 56, 432
BshTI	ACCGGT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	2 cut(s)	274, 404
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	5 cut(s)	75, 280, 311, 497, 514
BsmAI	GTCTC	2 cut(s)	37, 667
BsnI	GGCC	3 cut(s)	25, 56, 432
Bso31I	GGTCTC	2 cut(s)	37, 667
BsoBI	CYCGRG	2 cut(s)	274, 404
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	4 cut(s)	85, 96, 107, 359
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	3 cut(s)	25, 56, 432
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	574
BspTNI	GGTCTC	2 cut(s)	37, 667
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	189, 306, 433, 508
BssMI	GATC	4 cut(s)	85, 96, 107, 359
BssT1I	CCWWGG	3 cut(s)	189, 306, 508
Bst2UI	CCWGG	3 cut(s)	70, 235, 597
Bst4CI	ACNGT	4 cut(s)	118, 163, 329, 456
Bst6I	CTCTTC	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	126, 219
BstDSI	CCRYGG	2 cut(s)	306, 433
BstEII	GGTNACC	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	245, 674
BstFNI	CGCG	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	4 cut(s)	88, 99, 110, 362
BstMAI	GTCTC	2 cut(s)	37, 667
BstMBI	GATC	4 cut(s)	85, 96, 107, 359
BstMCI	CGRYCG	1 cut(s)	617
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 70, 301, 501
BstNI	CCWGG	3 cut(s)	70, 235, 597
BstNSI	RCATGY	1 cut(s)	625
BstPI	GGTNACC	1 cut(s)	486
BstSCI	CCNGG	3 cut(s)	68, 233, 595
BstSLI	GKGCMC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	210, 491
BstV2I	GAAGAC	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	25, 56, 432
BtgI	CCRYGG	2 cut(s)	306, 433
BtsCI	GGATG	2 cut(s)	245, 674
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	3 cut(s)	33, 80, 644
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	2 cut(s)	58, 322
CfoI	GCGC	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	55, 582
Csp6I	GTAC	3 cut(s)	378, 552, 629
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	5 cut(s)	21, 154, 307, 381, 622
CviJI	RGCY	9 cut(s)	25, 56, 79, 168, 223, 304, 432, 481, 504
CviKI_1	RGCY	9 cut(s)	25, 56, 79, 168, 223, 304, 432, 481, 504
CviQI	GTAC	3 cut(s)	378, 552, 629
DdeI	CTNAG	2 cut(s)	126, 219
DpnI	GATC	4 cut(s)	87, 98, 109, 361
DpnII	GATC	4 cut(s)	85, 96, 107, 359
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Eco130I	CCWWGG	3 cut(s)	189, 306, 508
Eco31I	GGTCTC	2 cut(s)	37, 667
Eco47I	GGWCC	1 cut(s)	582
Eco88I	CYCGRG	2 cut(s)	274, 404
Eco91I	GGTNACC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	3 cut(s)	68, 233, 595
EcoT14I	CCWWGG	3 cut(s)	189, 306, 508
ErhI	CCWWGG	3 cut(s)	189, 306, 508
FaeI	CATG	5 cut(s)	24, 157, 310, 384, 625
FatI	CATG	5 cut(s)	20, 153, 306, 380, 621
FbaI	TGATCA	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	224, 505
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	224, 505
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	224, 505
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	3 cut(s)	25, 56, 432
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	24, 157, 310, 384, 625
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HincII	GTYRAC	1 cut(s)	332
HindII	GTYRAC	1 cut(s)	332
HinfI	GANTC	1 cut(s)	609
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	332, 411
Hpy188I	TCNGA	4 cut(s)	85, 90, 214, 614
Hpy188III	TCNNGA	3 cut(s)	111, 136, 274
Hpy8I	GTNNAC	2 cut(s)	332, 411
HpyAV	CCTTC	2 cut(s)	273, 432
HpyCH4III	ACNGT	4 cut(s)	118, 163, 329, 456
HpyCH4V	TGCA	8 cut(s)	43, 151, 182, 242, 325, 411, 470, 642
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 70, 301, 501
HpyF3I	CTNAG	2 cut(s)	126, 219
Hsp92II	CATG	5 cut(s)	24, 157, 310, 384, 625
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	1 cut(s)	359
Kzo9I	GATC	4 cut(s)	85, 96, 107, 359
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	2 cut(s)	210, 491
LweI	GCATC	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	486, 591
MalI	GATC	4 cut(s)	87, 98, 109, 361
MboI	GATC	4 cut(s)	85, 96, 107, 359
MboII	GAAGA	3 cut(s)	201, 385, 543
MfeI	CAATTG	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	25
MluCI	AATT	7 cut(s)	38, 121, 351, 385, 465, 576, 645
MluNI	TGGCCA	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	2 cut(s)	259, 422
Mox20I	TGGCCA	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	1 cut(s)	463
Msp20I	TGGCCA	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	3 cut(s)	70, 235, 597
MunI	CAATTG	1 cut(s)	38
MvaI	CCWGG	3 cut(s)	70, 235, 597
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	4 cut(s)	49, 70, 301, 501
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	4 cut(s)	85, 96, 107, 359
NlaIII	CATG	5 cut(s)	24, 157, 310, 384, 625
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	574
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	609
PflMI	CCANNNNNTGG	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	233
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	225, 506
Psp6I	CCWGG	3 cut(s)	68, 233, 595
PspEI	GGTNACC	1 cut(s)	486
PspGI	CCWGG	3 cut(s)	68, 233, 595
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	2 cut(s)	55, 582
PstNI	CAGNNNCTG	2 cut(s)	58, 322
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	3 cut(s)	379, 553, 630
RsaNI	GTAC	3 cut(s)	378, 552, 629
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	2 cut(s)	224, 505
Sau3AI	GATC	4 cut(s)	85, 96, 107, 359
Sau96I	GGNCC	2 cut(s)	55, 582
ScrFI	CCNGG	3 cut(s)	70, 235, 597
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	5 cut(s)	170, 225, 483, 573, 598
SfaNI	GCATC	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	582
Sse9I	AATT	7 cut(s)	38, 121, 351, 385, 465, 576, 645
SsiI	CCGC	1 cut(s)	491
StyD4I	CCNGG	3 cut(s)	68, 233, 595
StyI	CCWWGG	3 cut(s)	189, 306, 508
TaaI	ACNGT	4 cut(s)	118, 163, 329, 456
TaqI	TCGA	2 cut(s)	110, 574
TaqII	GACCGA	1 cut(s)	631
TasI	AATT	7 cut(s)	38, 121, 351, 385, 465, 576, 645
TatI	WGTACW	2 cut(s)	377, 628
TfiI	GAWTC	1 cut(s)	609
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TscAI	CASTG	3 cut(s)	33, 80, 644
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	2 cut(s)	223, 504
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	3 cut(s)	9, 195, 397
TspGWI	ACGGA	2 cut(s)	93, 380
TspRI	CASTG	3 cut(s)	33, 80, 644
Van91I	CCANNNNNTGG	1 cut(s)	75
VneI	GTGCAC	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	3 cut(s)	121, 576, 645
XceI	RCATGY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.