MD15G1337600.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0005393
Physical Location & Seq
Reverse (-)
37998743 .. 38008018
9276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1337600.v1.1.491

Sequence Viewer

Length: 2658 bp
ATGAATAGAAGCAGCCGAAAGCGGTCTTCTAAATGGGATTTGGTGGACGAGCCTCAGTTTGAAGATGCAAATATGCAGGACAACGGTTGGATGGGAAAGGCAGGTAGGACATTTCGTCCTAAGGAATCTGGACATGACTGGCCTTCTCCAGAGACAAATGATCTGCAGAGACCTAAGCATGATTTGGATTTGGCTTCCAGGGAACCTTTGCCCGGAAGCAGAGGTTCACATAAGCATGGGAGTATGAATAAGAGATGCAATAGATACATTGATGACTCTATGGTGTGGGATGGAGATGAAAATTGCAGCACAAGGATGTCTCCTGGTTTTGATGACTGGAGAGAACATCGTAGTCAGTCCCCAAAAAGTGGTTGGAAAAGGTCACTGAGAGGTAGGAGTAGAAGTAGAAGCAGGAGCAGGAGTAAGAGCCAGAGCTGGAGCAGGAGCCCTGATCGTGGCTATAGGCGGGAATCACTTTTCCTTGACAGAAATAGAGGCAGGCCAGGCATTTCAGCTCAATTGTGCAAAGATTATATGACTGGGAGATGCAGGAGAGCTAGTGATTGCCAATTTCTTCATGAGGGTAATTCCAAGTATGATGATAGCTGGGAAAGTCGACACAGGAAACGTGGTGCTTTGAGATATGCTAGTCCTCCTGAAACTACCGAGTACTACCCATTAAAAAGTGAAAGATATTCTGTGTCTTGTAGTGATTTTGTAAAGGGGAAGTGCCGCAAGGGTGCCTCTTGCAAGTTCAATCACCATCGTCCTTCTGATGGATTCAGCAAAGATTCTACAATTGATAATACGAGAGAAAGGGAAAATGAAAGAAGGAACAGAGATACTTCTACAGAGCGAGGTGCTGAGCGTGTACCACACAGAAGTGGCGATATTCCTTGCAAATTTTTTGCTGCGGGAAATTGTCGTAATAAAAAGTATTGTCGGTTTTCTCATCATATTCAAGCTTATGTAAGTCCTGAAAGAAAGTCAAAGGATGGCCGGTGGGGCCCGGGTCACAGTTTAAATGATGCAGGCCCAGCATGGAATGGTCCAAAATGCAGTGATACCGTGACTCTGTCAGATGCCCCAATGTTGACTGTAGATAACAGAAATATTGGTGTTCCAGAGGTACGGTCTAGTGCTTGGTCTGTGGATGATAATAGATGGGGTTGCGATCAGAACGATGAGAACAAAAATTGTGCTGACCGCAATGTTAGTCATGAAGCAGCTGAGAGGAATGAGAAGGATGCAAATCTGTGGAAGGAAGATAATGTGGGTGCTCGTGTGGATCTTCCCAAATCAAGAGATACTGAAAAATGGCTTGGTGACATGTCTCCTGATTGGAATTACACGGTGCAATCCTCCAACCATGTTGGGAAACAAGAGCATGGTTGCATTACGCGAGGTTCAGAACCTTCAACTCGGGTACATGGTGCTGCTTCAATTATTGAACAAGAGATAGCTGAAAGATCTGATTTTCTGCAGAACAAGGATCTGAGGGGAGATGGAGTTATTTCCTTGCCATATGACAATAGGAATGCCATTGAAGAACCTTCTAGTTTTCGTAATAACCTAAGTGTTACTGCAAATATTGTGGGCTGCCAAAGTTTTGACAACAGTGGCCAGAGTTCAAGTGCTTTTCCTTTTTCAGGATTGAGCACAATTGGGCAAAGTCAAACACTAATCCCAGGCAGAGGAATTGTAAAAAGTCCGCATGATACACTGTCCCCAGAGGGTAAATCTGTGAACAAATTAGATATAGGTGATGCAAAAACTTCACTAGTTGATGGAATTCCTCAAGTTCCAAGTTTGGTAGGTGGTAAAGAACTTAAGCAACTTACCAATCTTTCAGCCTCTCTGGCTCAGTTACTTGGAAATCGGCAGCAACTTCCACAGATTTATGCTGCTTTAAATGCTCATAATGCGGTGAGCACCCCACCTCTCCTTCCCAAATCCAAAGGATCTTCTGAGCAGCTTTTGGGAGCAACTTCTCAGCCCGATCCAGCCATGTTATCTCATAAGCCGTATGATCCTATATGTGATAGCATAGAACATAGAATTAATAACAATCAAATGTGCCTTTTGCCAAATAGTGCTGGAAACACAAGTGTTGATGGAAAAGTAGAGAAACTGTCAAATGTTGTATCTCCATCTTCTTTACCTAGCGGAGCAAATACAAACAATTATCATCAGACTAATAATCCAGTACAAGAACCTACACATGAGAATCACCAGTTAAGTCAGCTGGAGCGTGGTGCAAAACCTGTGGTTGTCAAGGGAAATGGTGATCTTGGGGCCAAGGAAATCAAGAGCGATCAGGAAGAAAATAATTCCCCAGTTAATGGTCCCATGGAGGTCACAGAAAAAGATGGTGCTGACGGGGGCAAGAAACTCAAGGAAGTGAAGGGGAGTCGTGCATTCAAATTTGCACTTGTGGAAAACGTTAAGGAGCTTTTAAAACCCTCATGGAAAGAAGGTCAAGTCAGCAAAGATGCTTACAAAACTATAGTGAAGAAGGTGGTTGATAAAGTGACCAGTACCATGCAGGGGGCTAATATTCCCCAGACTCAAGAGAAGATTGATCATTATCTATCATTTTCAAAACCAAAGCTTACTAAACTTGTACAGGCATATGTAGAAAAAATGCACAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

886

Amino Acids

98.72

Weight (kDa)

9.08

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 811 - 883 1.3e-07 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 740
AccB7I CCANNNNNTGG 2 cut(s) 368, 2342
AccI GTMKAC 1 cut(s) 616
AccII CGCG 1 cut(s) 1402
AciI CCGC 8 cut(s) 22, 466, 733, 914, 1207, 1712, 1925, 2166
AclI AACGTT 1 cut(s) 2442
AclWI GGATC 5 cut(s) 1296, 1500, 1969, 1994, 2024
AcoI YGGCCR 2 cut(s) 997, 1621
AcsI RAATTY 3 cut(s) 902, 1791, 2423
AfaI GTAC 7 cut(s) 671, 873, 1131, 1428, 2208, 2539, 2625
AfiI CCNNNNNNNGG 8 cut(s) 212, 368, 455, 776, 1649, 1694, 2342, 2547
AflII CTTAAG 1 cut(s) 1829
AflIII ACRYGT 1 cut(s) 1329
AhdI GACNNNNNGTC 1 cut(s) 114
AhlI ACTAGT 1 cut(s) 1780
AjnI CCWGG 4 cut(s) 197, 322, 502, 1687
AjuI GAANNNNNNNTTGG 2 cut(s) 1305, 1337
AleI CACNNNNGTG 1 cut(s) 882
Alw21I GWGCWC 3 cut(s) 1282, 1661, 1934
Alw26I GTCTC 4 cut(s) 146, 163, 324, 1338
AlwI GGATC 5 cut(s) 1296, 1500, 1969, 1994, 2024
Ama87I CYCGRG 2 cut(s) 1009, 1422
AoxI GGCC 8 cut(s) 140, 500, 997, 1006, 1033, 1621, 2295, 2652
ApaI GGGCCC 1 cut(s) 1010
ApeKI GCWGC 9 cut(s) 12, 306, 911, 1226, 1436, 1599, 1882, 1904, 1972
ApoI RAATTY 3 cut(s) 902, 1791, 2423
AseI ATTAAT 1 cut(s) 2061
AspS9I GGNCC 6 cut(s) 1006, 1007, 1034, 1049, 2295, 2345
AsuC2I CCSGG 3 cut(s) 213, 1010, 1011
AsuHPI GGTGA 6 cut(s) 752, 1337, 1775, 1939, 2222, 2297
AvaI CYCGRG 2 cut(s) 1009, 1422
AvaII GGWCC 2 cut(s) 1049, 2345
AxyI CCTNAGG 1 cut(s) 120
BaeGI GKGCMC 1 cut(s) 1010
BalI TGGCCA 1 cut(s) 1623
BanI GGYRCC 1 cut(s) 740
BanII GRGCYC 2 cut(s) 449, 1010
BauI CACGAG 1 cut(s) 1281
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 3 cut(s) 1282, 1661, 1934
BbvI GCAGC 9 cut(s) 24, 318, 898, 1238, 1423, 1586, 1891, 1894, 1984
BceAI ACGGC 1 cut(s) 2008
BciT130I CCWGG 4 cut(s) 199, 324, 504, 1689
BclI TGATCA 1 cut(s) 2581
BcnI CCSGG 3 cut(s) 213, 1010, 1011
BcoDI GTCTC 4 cut(s) 146, 163, 324, 1338
BcuI ACTAGT 1 cut(s) 1780
BfaI CTAG 6 cut(s) 558, 648, 1137, 1557, 1781, 2163
BfmI CTRYAG 6 cut(s) 164, 460, 849, 1098, 1481, 2505
BfrI CTTAAG 1 cut(s) 1829
BfuAI ACCTGC 1 cut(s) 92
BglI GCCNNNNNGGC 2 cut(s) 1005, 1859
BglII AGATCT 1 cut(s) 1469
BlpI GCTNAGC 1 cut(s) 864
BmcAI AGTACT 1 cut(s) 671
Bme1390I CCNGG 7 cut(s) 199, 213, 324, 504, 1010, 1011, 1689
Bme18I GGWCC 2 cut(s) 1049, 2345
BmeRI GACNNNNNGTC 1 cut(s) 114
BmeT110I CYCGRG 2 cut(s) 1009, 1422
BmgT120I GGNCC 6 cut(s) 1006, 1007, 1034, 1049, 2295, 2345
BmiI GGNNCC 7 cut(s) 204, 446, 742, 1007, 1008, 2296, 2347
BmrFI CCNGG 7 cut(s) 199, 213, 324, 504, 1010, 1011, 1689
BmrI ACTGGG 2 cut(s) 549, 2330
BmsI GCATC 8 cut(s) 55, 245, 536, 1018, 1072, 1237, 1756, 2482
BmuI ACTGGG 2 cut(s) 549, 2330
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 4 cut(s) 132, 358, 457, 2267
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 864
BpuEI CTTGAG 3 cut(s) 1782, 2378, 2553
BpuMI CCSGG 3 cut(s) 213, 1010, 1011
BsaBI GATNNNNATC 2 cut(s) 1251, 2586
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 5 cut(s) 198, 1009, 1687, 2298, 2349
BsaXI ACNNNNNCTCC 8 cut(s) 388, 406, 418, 436, 544, 574, 1494, 1524
Bsc4I CCNNNNNNNGG 8 cut(s) 212, 368, 455, 776, 1649, 1694, 2342, 2547
Bse118I RCCGGY 1 cut(s) 999
Bse1I ACTGG 7 cut(s) 143, 341, 544, 2204, 2233, 2336, 2535
Bse21I CCTNAGG 1 cut(s) 120
Bse3DI GCAATG 1 cut(s) 1216
Bse8I GATNNNNATC 2 cut(s) 1251, 2586
BseBI CCWGG 4 cut(s) 199, 324, 504, 1689
BseDI CCNNGG 5 cut(s) 198, 1009, 1687, 2298, 2349
BseGI GGATG 6 cut(s) 96, 295, 321, 1000, 1159, 1252
BseJI GATNNNNATC 2 cut(s) 1251, 2586
BseLI CCNNNNNNNGG 8 cut(s) 212, 368, 455, 776, 1649, 1694, 2342, 2547
BseMI GCAATG 1 cut(s) 1216
BseMII CTCAG 8 cut(s) 68, 377, 855, 1221, 1487, 1877, 1959, 2006
BseNI ACTGG 7 cut(s) 143, 341, 544, 2204, 2233, 2336, 2535
BseSI GKGCMC 1 cut(s) 1010
BseXI GCAGC 9 cut(s) 24, 318, 898, 1238, 1423, 1586, 1891, 1894, 1984
BseYI CCCAGC 2 cut(s) 606, 1036
Bsh1236I CGCG 1 cut(s) 1402
BshFI GGCC 8 cut(s) 142, 502, 999, 1008, 1035, 1623, 2297, 2654
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 3 cut(s) 1282, 1661, 1934
BsiHKCI CYCGRG 2 cut(s) 1009, 1422
BsiSI CCGG 3 cut(s) 213, 1000, 1010
BslFI GGGAC 3 cut(s) 343, 1711, 2331
BslI CCNNNNNNNGG 8 cut(s) 212, 368, 455, 776, 1649, 1694, 2342, 2547
BsmAI GTCTC 4 cut(s) 146, 163, 324, 1338
BsmFI GGGAC 3 cut(s) 343, 1711, 2331
BsmI GAATGC 2 cut(s) 1543, 2417
BsnI GGCC 8 cut(s) 142, 502, 999, 1008, 1035, 1623, 2297, 2654
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 1009, 1422
Bsp120I GGGCCC 1 cut(s) 1006
Bsp1286I GDGCHC 5 cut(s) 449, 1010, 1282, 1661, 1934
Bsp1407I TGTACA 1 cut(s) 2623
Bsp1720I GCTNAGC 1 cut(s) 864
Bsp19I CCATGG 1 cut(s) 2349
BspACI CCGC 8 cut(s) 22, 466, 733, 914, 1207, 1712, 1925, 2166
BspANI GGCC 8 cut(s) 142, 502, 999, 1008, 1035, 1623, 2297, 2654
BspCNI CTCAG 8 cut(s) 67, 378, 856, 1222, 1488, 1876, 1960, 2005
BspFNI CGCG 1 cut(s) 1402
BspHI TCATGA 2 cut(s) 577, 1219
BspLI GGNNCC 7 cut(s) 204, 446, 742, 1007, 1008, 2296, 2347
BspMAI CTGCAG 2 cut(s) 168, 1485
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 5 cut(s) 1296, 1500, 1969, 1994, 2024
BspT107I GGYRCC 1 cut(s) 740
BspTI CTTAAG 1 cut(s) 1829
BspTNI GGTCTC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 1216
BsrFI RCCGGY 1 cut(s) 999
BsrGI TGTACA 1 cut(s) 2623
BsrI ACTGG 7 cut(s) 143, 341, 544, 2204, 2233, 2336, 2535
BssAI RCCGGY 1 cut(s) 999
BssECI CCNNGG 5 cut(s) 198, 1009, 1687, 2298, 2349
BssSI CACGAG 1 cut(s) 1281
BssT1I CCWWGG 2 cut(s) 2298, 2349
Bst2BI CACGAG 1 cut(s) 1281
Bst2UI CCWGG 4 cut(s) 199, 324, 504, 1689
Bst4CI ACNGT 9 cut(s) 86, 1019, 1069, 1099, 1134, 1354, 1619, 1725, 2133
BstAFI CTTAAG 1 cut(s) 1829
BstAUI TGTACA 1 cut(s) 2623
BstC8I GCNNGC 2 cut(s) 500, 1033
BstDSI CCRYGG 1 cut(s) 2349
BstENI CCTNNNNNAGG 1 cut(s) 1647
BstF5I GGATG 6 cut(s) 96, 295, 321, 1000, 1159, 1252
BstFNI CGCG 1 cut(s) 1402
BstMAI GTCTC 4 cut(s) 146, 163, 324, 1338
BstMWI GCNNNNNNNGC 6 cut(s) 504, 1005, 1037, 1859, 1913, 1922
BstNI CCWGG 4 cut(s) 199, 324, 504, 1689
BstNSI RCATGY 1 cut(s) 1333
BstSCI CCNGG 7 cut(s) 197, 211, 322, 502, 1008, 1009, 1687
BstSFI CTRYAG 6 cut(s) 164, 460, 849, 1098, 1481, 2505
BstSLI GKGCMC 1 cut(s) 1010
BstUI CGCG 1 cut(s) 1402
BstV1I GCAGC 9 cut(s) 24, 318, 898, 1238, 1423, 1586, 1891, 1894, 1984
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 4 cut(s) 1288, 1469, 1492, 1961
BstYI RGATCY 4 cut(s) 1288, 1469, 1492, 1961
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 8 cut(s) 142, 502, 999, 1008, 1035, 1623, 2297, 2654
BtgI CCRYGG 1 cut(s) 2349
BtsCI GGATG 6 cut(s) 96, 295, 321, 1000, 1159, 1252
BtsI GCAGTG 1 cut(s) 1066
BtsIMutI CAGTG 4 cut(s) 383, 1066, 1624, 1721
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 2 cut(s) 500, 1033
CciI TCATGA 2 cut(s) 577, 1219
Cfr10I RCCGGY 1 cut(s) 999
Cfr13I GGNCC 6 cut(s) 1006, 1007, 1034, 1049, 2295, 2345
Cfr9I CCCGGG 1 cut(s) 1009
Csp6I GTAC 7 cut(s) 670, 872, 1130, 1427, 2207, 2538, 2624
CspCI CAANNNNNGTGG 4 cut(s) 1575, 1610, 2247, 2282
CviQI GTAC 7 cut(s) 670, 872, 1130, 1427, 2207, 2538, 2624
DraI TTTAAA 3 cut(s) 1023, 1911, 2457
DriI GACNNNNNGTC 1 cut(s) 114
EaeI YGGCCR 2 cut(s) 997, 1621
Eam1105I GACNNNNNGTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 2298, 2349
Eco147I AGGCCT 1 cut(s) 2654
Eco24I GRGCYC 2 cut(s) 449, 1010
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 1049, 2345
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 2 cut(s) 1009, 1422
EcoNI CCTNNNNNAGG 1 cut(s) 1647
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRI GAATTC 1 cut(s) 1791
EcoRII CCWGG 4 cut(s) 197, 322, 502, 1687
EcoT14I CCWWGG 2 cut(s) 2298, 2349
EcoT38I GRGCYC 2 cut(s) 449, 1010
ErhI CCWWGG 2 cut(s) 2298, 2349
FaqI GGGAC 3 cut(s) 343, 1711, 2331
FauI CCCGC 2 cut(s) 459, 907
FauNDI CATATG 2 cut(s) 1525, 2632
FbaI TGATCA 1 cut(s) 2581
FblI GTMKAC 1 cut(s) 616
FokI GGATG 6 cut(s) 103, 302, 328, 1007, 1166, 1259
FriOI GRGCYC 2 cut(s) 449, 1010
FspBI CTAG 6 cut(s) 558, 648, 1137, 1557, 1781, 2163
GsaI CCCAGC 2 cut(s) 610, 1040
GsuI CTGGAG 4 cut(s) 132, 358, 457, 2267
HaeIII GGCC 8 cut(s) 142, 502, 999, 1008, 1035, 1623, 2297, 2654
HapII CCGG 3 cut(s) 213, 1000, 1010
HincII GTYRAC 2 cut(s) 617, 1095
HindII GTYRAC 2 cut(s) 617, 1095
HindIII AAGCTT 2 cut(s) 963, 2609
HinfI GANTC 9 cut(s) 125, 275, 470, 780, 791, 1072, 2227, 2410, 2566
HpaII CCGG 3 cut(s) 213, 1000, 1010
HphI GGTGA 6 cut(s) 752, 1337, 1775, 1939, 2222, 2297
Hpy166II GTNNAC 6 cut(s) 46, 227, 617, 872, 1095, 1747
Hpy188I TCNGA 8 cut(s) 775, 1081, 1179, 1411, 1474, 1497, 1969, 2193
Hpy8I GTNNAC 6 cut(s) 46, 227, 617, 872, 1095, 1747
HpyCH4III ACNGT 9 cut(s) 86, 1019, 1069, 1099, 1134, 1354, 1619, 1725, 2133
HpyCH4IV ACGT 2 cut(s) 628, 2442
HpyF10VI GCNNNNNNNGC 6 cut(s) 504, 1005, 1037, 1859, 1913, 1922
HpySE526I ACGT 2 cut(s) 628, 2442
Ksp22I TGATCA 1 cut(s) 2581
LmnI GCTCC 7 cut(s) 414, 438, 444, 1982, 2168, 2248, 2449
Lsp1109I GCAGC 9 cut(s) 24, 318, 898, 1238, 1423, 1586, 1891, 1894, 1984
LweI GCATC 8 cut(s) 55, 245, 536, 1018, 1072, 1237, 1756, 2482
MaeI CTAG 6 cut(s) 558, 648, 1137, 1557, 1781, 2163
MaeII ACGT 2 cut(s) 628, 2442
MaeIII GTNAC 8 cut(s) 381, 1013, 1069, 1325, 1579, 1866, 2356, 2530
MfeI CAATTG 3 cut(s) 518, 798, 1662
MflI RGATCY 4 cut(s) 1288, 1469, 1492, 1961
MhlI GDGCHC 5 cut(s) 449, 1010, 1282, 1661, 1934
MlsI TGGCCA 1 cut(s) 1623
MluNI TGGCCA 1 cut(s) 1623
MlyI GAGTC 4 cut(s) 269, 1066, 2419, 2560
MmeI TCCRAC 3 cut(s) 68, 353, 1389
Mox20I TGGCCA 1 cut(s) 1623
MscI TGGCCA 1 cut(s) 1623
MseI TTAA 9 cut(s) 680, 1022, 1830, 1910, 2061, 2237, 2340, 2445, 2456
MslI CAYNNNNRTG 3 cut(s) 234, 314, 882
Msp20I TGGCCA 1 cut(s) 1623
MspA1I CMGCKG 2 cut(s) 1229, 2245
MspCI CTTAAG 1 cut(s) 1829
MspI CCGG 3 cut(s) 213, 1000, 1010
MspR9I CCNGG 7 cut(s) 199, 213, 324, 504, 1010, 1011, 1689
MunI CAATTG 3 cut(s) 518, 798, 1662
Mva1269I GAATGC 2 cut(s) 1543, 2417
MvaI CCWGG 4 cut(s) 199, 324, 504, 1689
MvnI CGCG 1 cut(s) 1402
MwoI GCNNNNNNNGC 6 cut(s) 504, 1005, 1037, 1859, 1913, 1922
NciI CCSGG 3 cut(s) 213, 1010, 1011
NcoI CCATGG 1 cut(s) 2349
NdeI CATATG 2 cut(s) 1525, 2632
NlaIV GGNNCC 7 cut(s) 204, 446, 742, 1007, 1008, 2296, 2347
NmuCI GTSAC 6 cut(s) 381, 1013, 1069, 1325, 2356, 2530
NspI RCATGY 1 cut(s) 1333
OliI CACNNNNGTG 1 cut(s) 882
PagI TCATGA 2 cut(s) 577, 1219
PceI AGGCCT 1 cut(s) 2654
PciI ACATGT 1 cut(s) 1329
PctI GAATGC 2 cut(s) 1543, 2417
PfeI GAWTC 5 cut(s) 125, 470, 780, 791, 2227
PflFI GACNNNGTC 1 cut(s) 1075
PflMI CCANNNNNTGG 2 cut(s) 368, 2342
PleI GAGTC 4 cut(s) 269, 1066, 2418, 2560
PpsI GAGTC 4 cut(s) 269, 1066, 2418, 2560
PscI ACATGT 1 cut(s) 1329
PshBI ATTAAT 1 cut(s) 2061
Psp1406I AACGTT 1 cut(s) 2442
Psp6I CCWGG 4 cut(s) 197, 322, 502, 1687
PspFI CCCAGC 2 cut(s) 606, 1036
PspGI CCWGG 4 cut(s) 197, 322, 502, 1687
PspN4I GGNNCC 7 cut(s) 204, 446, 742, 1007, 1008, 2296, 2347
PspOMI GGGCCC 1 cut(s) 1006
PspPI GGNCC 6 cut(s) 1006, 1007, 1034, 1049, 2295, 2345
PstI CTGCAG 2 cut(s) 168, 1485
PsuI RGATCY 4 cut(s) 1288, 1469, 1492, 1961
PsyI GACNNNGTC 1 cut(s) 1075
PvuII CAGCTG 2 cut(s) 1229, 2245
RsaI GTAC 7 cut(s) 671, 873, 1131, 1428, 2208, 2539, 2625
RsaNI GTAC 7 cut(s) 670, 872, 1130, 1427, 2207, 2538, 2624
RseI CAYNNNNRTG 3 cut(s) 234, 314, 882
SalI GTCGAC 1 cut(s) 615
SaqAI TTAA 9 cut(s) 680, 1022, 1830, 1910, 2061, 2237, 2340, 2445, 2456
Sau96I GGNCC 6 cut(s) 1006, 1007, 1034, 1049, 2295, 2345
ScaI AGTACT 1 cut(s) 671
SchI GAGTC 4 cut(s) 269, 1066, 2419, 2560
ScrFI CCNGG 7 cut(s) 199, 213, 324, 504, 1010, 1011, 1689
SduI GDGCHC 5 cut(s) 449, 1010, 1282, 1661, 1934
SfaNI GCATC 8 cut(s) 55, 245, 536, 1018, 1072, 1237, 1756, 2482
SfcI CTRYAG 6 cut(s) 164, 460, 849, 1098, 1481, 2505
SfiI GGCCNNNNNGGCC 1 cut(s) 1005
SinI GGWCC 2 cut(s) 1049, 2345
SmaI CCCGGG 1 cut(s) 1011
SmiMI CAYNNNNRTG 3 cut(s) 234, 314, 882
SmlI CTYRAG 4 cut(s) 1797, 1829, 2393, 2568
SmoI CTYRAG 4 cut(s) 1797, 1829, 2393, 2568
SpeI ACTAGT 1 cut(s) 1780
SseBI AGGCCT 1 cut(s) 2654
SsiI CCGC 8 cut(s) 22, 466, 733, 914, 1207, 1712, 1925, 2166
SspI AATATT 3 cut(s) 1114, 1591, 2557
SspMI CTAG 6 cut(s) 558, 648, 1137, 1557, 1781, 2163
StuI AGGCCT 1 cut(s) 2654
StyD4I CCNGG 7 cut(s) 197, 211, 322, 502, 1008, 1009, 1687
StyI CCWWGG 2 cut(s) 2298, 2349
TaaI ACNGT 9 cut(s) 86, 1019, 1069, 1099, 1134, 1354, 1619, 1725, 2133
TaiI ACGT 2 cut(s) 631, 2445
TaqI TCGA 1 cut(s) 616
TatI WGTACW 3 cut(s) 669, 2206, 2623
TauI GCSGC 1 cut(s) 735
TfiI GAWTC 5 cut(s) 125, 470, 780, 791, 2227
Tru1I TTAA 9 cut(s) 680, 1022, 1830, 1910, 2061, 2237, 2340, 2445, 2456
Tru9I TTAA 9 cut(s) 680, 1022, 1830, 1910, 2061, 2237, 2340, 2445, 2456
TscAI CASTG 4 cut(s) 390, 1066, 1624, 1728
TseFI GTSAC 6 cut(s) 381, 1013, 1069, 1325, 2356, 2530
TseI GCWGC 9 cut(s) 12, 306, 911, 1226, 1436, 1599, 1882, 1904, 1972
Tsp45I GTSAC 6 cut(s) 381, 1013, 1069, 1325, 2356, 2530
TspDTI ATGAA 6 cut(s) 17, 260, 312, 566, 840, 1236
TspMI CCCGGG 1 cut(s) 1009
TspRI CASTG 4 cut(s) 390, 1066, 1624, 1728
Tth111I GACNNNGTC 1 cut(s) 1075
Van91I CCANNNNNTGG 2 cut(s) 368, 2342
Vha464I CTTAAG 1 cut(s) 1829
VpaK11BI GGWCC 2 cut(s) 1049, 2345
VspI ATTAAT 1 cut(s) 2061
XagI CCTNNNNNAGG 1 cut(s) 1647
XapI RAATTY 3 cut(s) 902, 1791, 2423
XceI RCATGY 1 cut(s) 1333
XcmI CCANNNNNNNNNTGG 1 cut(s) 369
XmaI CCCGGG 1 cut(s) 1009
XmiI GTMKAC 1 cut(s) 616
XspI CTAG 6 cut(s) 558, 648, 1137, 1557, 1781, 2163
ZrmI AGTACT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.