Rroxscaffold_2G00123570

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005393
Physical Location & Seq
Reverse (-)
57406624 .. 57416380
9757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123570.1

Sequence Viewer

Length: 2943 bp
ATGAGTAGAAGCAGCAGGAAACGCTCTTCTAAATGGGATTTGCCTGAAGAGCCTCAATTTGAAGATGCAAATATGCCAGATGATGGTTGGATGGGAAAAGCGGGTAGGCCATTTCATCATAAAGAATCTGGACGTGAGTGGCACTCTCCAGAGCTTGGTGGTAATAATGCTTCAAAATGGTCAGGTTTAGAGACGAATGATATGCAGAGATCTAAGCGTGGTTTAGGATTGCCATCCAGGGAAGCTTTGCCTGGAAGCAGAAGCTCACATAGGAATGAAAGTATCAGTAAGGGCGGCAGCAGATACACAGAAGACTCCATGGTCTGGGATGAAGATGGAAATTGCAGCACAAGGATGTCTCCTGGTCTTGACGAGTGGAGACAACATCGTAGTCGGTCCCCCAAAAGTGGTTGGAGCAGGTCATTGAGGGGTAGGAGTAGAAGTAGAAGCTGGACCAGGAGTAGAAGCCAGAGCTGGAGCAGGAGTCCAGATCGTGGCTATAGGCGAGAATCAGTTTTCCTTGATAGAAATAGAAGCAGATCGGGAGTTTCAGCTCAAGTGTGCAAAGATTTTGCTGGTGGAAGATGCAGGAGAGGAAGTGATTGTCAGTTACTACATGAGGGTAATTCAAGTTATGATGATAGCTGGGAAGGTAGGCACAGGAATGGCAGCGCCTCAAAATATTCTACACCCCCTGTTTCAGGGGACAATCCATTAAAGAGTGGAAGGTCTTCGGTGTATGGTAATGATTTCATTAATGGGAAGTCTAGGAGGGAGGCATCTAGCAAGTTTGATAATCACCGAGTTTCTGATGGGTTCAGTAAAGGTTCTGCAAATGAGATTATTAGAGAAAGGGACAATGATAGAGAAAGGGACAGTGATAGAAGGAGAAGAGATGCTTCTACAGAGCGAGGTGTTGAGCGTGAACCCCGCAGGAGTGGTGATATTCCTTGCAAATTTTTTGCCGCGGGAAATTGTCGGAACAAAAAGTTTTGTCGGTTTTCCCATCATATTCAGTCACATGCAAGTTCTGAAAGAAGGTCACGGGATGACAGGTGGGGATTGGGCCACAGTTTAAATGATACAGACCAGGCATGGAATGGTCGAAAATGGAATGACACTCCGTCAGATTCTGCAAAGTTGAGTCCAGATAATACTGGAAGGCCACGTGATGGCAGATGGGCCCTGGGCCACAAAATAAATGATGCAGACCAGGCATGGGATGGTCAAAAATGGAGTGATTCTGTGACTCTGCCAGAGTCGGCAAAGTTGGGTGCAGATAATAACGGAAATATTGGTGTTCCGGAGCTGAGGTCGAGTGCTTGGTCTATGAATGATAATAGTTGGGGGCATGGTCTGAACAACGAGAACCAAATGCGTGGTGACCCAAGTGTTAGTCATGAAGCAGCCAAGAGGAATGAGAAGGAAGCACAACTGTGGAAGGAGGATAAAGTAGGTGCTAAGTCAAAAGATACTGAAAAATGGCTCGGAGATATGTCGCCGGATTGGAATTATACATTGCAATCCTCCAATATTGGGAAAGAAGAGCATGGTCACATTAGACGGGGTTCAGAAATTTCGAGAATTAATGATACTTCTTTAAATGCTTGCAAACAAGATATGTCTCCAGATTGGAATTATACATTGCAAACGTCCAACAATATTAGCAGAGAAGAGCATGGTCACAGTGCACGGGGTTCAGAATCTTCAAGACTTAATGATACTTCTCTAAAAGCTAGCAATCAAGATATAATTCGAGAGGCTTCAGTCCAGGTACATGGTGGTGCTTCAGTTATGCAACCAATGATAGCTGAAAGATCTAATTATCTACAGAACCAGGATATAAGGGAAGGTGGTTCTATTGGATTGCCACATGATGGCAAGAATGCAATTGATAGAACTGCTAGTTCTCGCACTGACCTCAATGTTTCTGCAAATATCATGTCACACCAAAACTTTGACCATAATGTGCAGAGTTCAACTGCTTCTCCCTTTCCTGGCATGAACACAATCGGGCAAAGTCAAGCGCTTATCCCAGCTCACGCCCAAGGAGGACTTGTAAATCCACAAGATACACTATCTGGACAGAGGAAATCTGTCATCAAGTTAGATATAGGGGATTCAAAAACATCACTAGTTACTGGCCTTCCTCCAGTGCCTAATGTGGTAGGTGGTAAAGATCTCACACAACTTACCAGTCTTTCAGTCTCGCTGGCTCAGTTATTGGAAAATGGACATCAGCTTCCACAGCTTTATGCTGCTTTAAATTCTCATAATGCATTGAATGCTCCTCCATTTCCCAAATCTGAAGGATCTTCTGAGCAGCTTTCAGCTATTCAGCCAGAACCAGCCATGTTGTCTCAGAAGCCATATGATCCTACATCTGATAGCATGGAACTTAAGAAGCAAGAACACAATAACAACAAAGCGTGCCTTCCGCCAAATAGCACAGGGAAGACAGGTGTTGATGGAAAATTAGAAAAGCCGTCAGATGATTACCATCAGATTCATAATTCAGTAGAAGAACCTAGGCGTAAGAGCCACCAGTTGAATCAGCCTGATGGAAATAATGAACTTGGGGTTGAGGAAAGTAAGAAAGTAGAAGAAGAGAATAACTCCCCCGAAAATGGTCCCTTGGAGGTCGCAGATAAAGATGGGGCTGATGAGGGCAAGAAACTCAAGGAAGTGAAGGGGATACGTGCATTTAAATTTGCTCTTGCAGAGTTCGTTAAGGATCTTTTAAAACCTTCATGGAAAGATGGTCAAGTCAGCAAAGATGCATACAAAACCATAGTGAAGAAGGTGGTTGACAAAGTGACTGGTACCATACCGGGGGCTAATATTCCACAGACACAAGAAAAGATTGACAGTTATTTGTCATTTTCAAAACCGAAGCTGACAAAACTTGTACAGGCATATGTGGAAAAAATGCAAAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH

Protein Analysis

980

Amino Acids

109.01

Weight (kDa)

8.95

Isoelectric Point (pI)

59.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SCAF11-like_C PF23030 907 - 978 4.7e-06 SCAF11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 408
Acc65I GGTACC 1 cut(s) 2822
AccB1I GGYRCC 1 cut(s) 2822
AccB7I CCANNNNNTGG 6 cut(s) 83, 155, 324, 494, 1172, 1877
AccII CGCG 1 cut(s) 968
AccIII TCCGGA 1 cut(s) 1303
AciI CCGC 6 cut(s) 101, 294, 931, 966, 968, 2438
AclWI GGATC 3 cut(s) 2320, 2369, 2742
AcsI RAATTY 4 cut(s) 956, 1575, 2266, 2708
AcuI CTGAAG 4 cut(s) 66, 1749, 1773, 2328
AcvI CACGTG 1 cut(s) 1169
AfaI GTAC 3 cut(s) 1776, 2824, 2910
AfeI AGCGCT 1 cut(s) 2028
AflII CTTAAG 1 cut(s) 2399
AgsI TTSAA 9 cut(s) 62, 174, 630, 1710, 1980, 2124, 2284, 2551, 2886
AhdI GACNNNNNGTC 1 cut(s) 1123
AhlI ACTAGT 1 cut(s) 2134
AjiI CACGTC 1 cut(s) 134
AleI CACNNNNGTG 1 cut(s) 1435
Alw21I GWGCWC 1 cut(s) 1693
Alw26I GTCTC 6 cut(s) 185, 363, 373, 1629, 2212, 2364
Alw44I GTGCAC 1 cut(s) 1689
AlwI GGATC 3 cut(s) 2320, 2369, 2742
AlwNI CAGNNNCTG 1 cut(s) 1133
Aor13HI TCCGGA 1 cut(s) 1303
Aor51HI AGCGCT 1 cut(s) 2028
AoxI GGCC 6 cut(s) 107, 1066, 1163, 1182, 1189, 2143
ApaI GGGCCC 1 cut(s) 1186
ApaLI GTGCAC 1 cut(s) 1689
ApeKI GCWGC 7 cut(s) 12, 297, 345, 669, 1406, 2258, 2323
ApoI RAATTY 4 cut(s) 956, 1575, 2266, 2708
ArsI GACNNNNNNTTYG 2 cut(s) 1928, 1960
AseI ATTAAT 2 cut(s) 756, 1587
Asp700I GAANNNNTTC 1 cut(s) 730
Asp718I GGTACC 1 cut(s) 2822
AspA2I CCTAGG 1 cut(s) 2528
AspLEI GCGC 2 cut(s) 674, 2029
AspS9I GGNCC 7 cut(s) 396, 453, 1066, 1182, 1183, 1189, 2630
AsuC2I CCSGG 1 cut(s) 2832
AsuHPI GGTGA 3 cut(s) 791, 953, 1394
AsuNHI GCTAGC 1 cut(s) 1736
AvaII GGWCC 3 cut(s) 396, 453, 2630
AvrII CCTAGG 1 cut(s) 2528
BaeGI GKGCMC 2 cut(s) 1186, 1693
BanI GGYRCC 1 cut(s) 2822
BanII GRGCYC 1 cut(s) 1186
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BbrPI CACGTG 1 cut(s) 1169
BbsI GAAGAC 3 cut(s) 318, 723, 2462
Bbv12I GWGCWC 1 cut(s) 1693
BbvCI CCTCAGC 1 cut(s) 1310
BbvI GCAGC 7 cut(s) 24, 309, 357, 681, 1418, 2245, 2335
BceAI ACGGC 1 cut(s) 2470
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciVI GTATCC 1 cut(s) 2688
BcnI CCSGG 1 cut(s) 2832
BcoDI GTCTC 6 cut(s) 185, 363, 373, 1629, 2212, 2364
BcuI ACTAGT 1 cut(s) 2134
BfaI CTAG 6 cut(s) 768, 783, 1737, 1905, 2135, 2529
BfmI CTRYAG 3 cut(s) 499, 903, 1829
BfoI RGCGCY 2 cut(s) 675, 2030
BfrI CTTAAG 1 cut(s) 2399
BfuAI ACCTGC 1 cut(s) 408
BfuI GTATCC 1 cut(s) 2688
BglII AGATCT 3 cut(s) 209, 1817, 2179
BisI GCNGC 9 cut(s) 13, 295, 298, 346, 670, 966, 1407, 2259, 2324
BlnI CCTAGG 1 cut(s) 2528
BlsI GCNGC 9 cut(s) 14, 296, 299, 347, 671, 967, 1408, 2260, 2325
Bme18I GGWCC 3 cut(s) 396, 453, 2630
BmeRI GACNNNNNGTC 1 cut(s) 1123
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 7 cut(s) 396, 453, 1066, 1182, 1183, 1189, 2630
BmiI GGNNCC 4 cut(s) 398, 1184, 2632, 2824
BmsI GCATC 6 cut(s) 55, 575, 788, 886, 1195, 2767
BmtI GCTAGC 1 cut(s) 1740
BpiI GAAGAC 3 cut(s) 318, 723, 2462
BplI GAGNNNNNCTC 4 cut(s) 128, 160, 2600, 2632
BpmI CTGGAG 4 cut(s) 132, 496, 1611, 2136
Bpu10I CCTNAGC 1 cut(s) 1310
BpuEI CTTGAG 2 cut(s) 540, 2663
BpuMI CCSGG 1 cut(s) 2832
BsaAI YACGTR 2 cut(s) 1169, 2699
BsaBI GATNNNNATC 2 cut(s) 232, 2499
BsaJI CCNNGG 9 cut(s) 237, 318, 966, 1185, 1186, 2047, 2528, 2634, 2831
BsaWI WCCGGW 1 cut(s) 1303
Bse1I ACTGG 6 cut(s) 1162, 2146, 2153, 2196, 2545, 2824
Bse3DI GCAATG 2 cut(s) 1517, 1643
Bse8I GATNNNNATC 2 cut(s) 232, 2499
BseAI TCCGGA 1 cut(s) 1303
BseDI CCNNGG 9 cut(s) 237, 318, 966, 1185, 1186, 2047, 2528, 2634, 2831
BseGI GGATG 6 cut(s) 96, 233, 334, 360, 1054, 1228
BseJI GATNNNNATC 2 cut(s) 232, 2499
BseMI GCAATG 2 cut(s) 1517, 1643
BseMII CTCAG 4 cut(s) 1301, 2231, 2310, 2375
BseNI ACTGG 6 cut(s) 1162, 2146, 2153, 2196, 2545, 2824
BseRI GAGGAG 1 cut(s) 2280
BseSI GKGCMC 2 cut(s) 1186, 1693
BseXI GCAGC 7 cut(s) 24, 309, 357, 681, 1418, 2245, 2335
BseYI CCCAGC 2 cut(s) 645, 2035
BsgI GTGCAG 2 cut(s) 1296, 1991
Bsh1236I CGCG 1 cut(s) 968
BshFI GGCC 6 cut(s) 109, 1068, 1165, 1184, 1191, 2145
BshNI GGYRCC 1 cut(s) 2822
BsiHKAI GWGCWC 1 cut(s) 1693
BsiSI CCGG 3 cut(s) 1304, 1502, 2831
BslFI GGGAC 5 cut(s) 382, 719, 869, 887, 2616
BsmAI GTCTC 6 cut(s) 185, 363, 373, 1629, 2212, 2364
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 5 cut(s) 382, 719, 869, 887, 2616
BsmI GAATGC 2 cut(s) 1891, 2290
BsnI GGCC 6 cut(s) 109, 1068, 1165, 1184, 1191, 2145
Bsp120I GGGCCC 1 cut(s) 1182
Bsp1286I GDGCHC 2 cut(s) 1186, 1693
Bsp13I TCCGGA 1 cut(s) 1303
Bsp1407I TGTACA 1 cut(s) 2908
Bsp143I GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 6 cut(s) 101, 294, 931, 966, 968, 2438
BspANI GGCC 6 cut(s) 109, 1068, 1165, 1184, 1191, 2145
BspCNI CTCAG 4 cut(s) 1302, 2230, 2311, 2374
BspEI TCCGGA 1 cut(s) 1303
BspFNI CGCG 1 cut(s) 968
BspHI TCATGA 1 cut(s) 1399
BspLI GGNNCC 4 cut(s) 398, 1184, 2632, 2824
BspMI ACCTGC 1 cut(s) 408
BspOI GCTAGC 1 cut(s) 1740
BspPI GGATC 3 cut(s) 2320, 2369, 2742
BspQI GCTCTTC 4 cut(s) 31, 42, 1539, 1668
BspT107I GGYRCC 1 cut(s) 2822
BspTI CTTAAG 1 cut(s) 2399
BsrDI GCAATG 2 cut(s) 1517, 1643
BsrGI TGTACA 1 cut(s) 2908
BsrI ACTGG 6 cut(s) 1162, 2146, 2153, 2196, 2545, 2824
BssECI CCNNGG 9 cut(s) 237, 318, 966, 1185, 1186, 2047, 2528, 2634, 2831
BssMI GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
BssT1I CCWWGG 4 cut(s) 318, 2047, 2528, 2634
Bst4CI ACNGT 5 cut(s) 878, 1073, 1437, 1688, 2870
Bst6I CTCTTC 6 cut(s) 31, 42, 886, 1539, 1668, 2601
BstAFI CTTAAG 1 cut(s) 2399
BstAPI GCANNNNNTGC 1 cut(s) 2285
BstAUI TGTACA 1 cut(s) 2908
BstBAI YACGTR 2 cut(s) 1169, 2699
BstC8I GCNNGC 4 cut(s) 1609, 1738, 2214, 2431
BstDEI CTNAG 6 cut(s) 213, 1310, 1461, 2217, 2319, 2361
BstDSI CCRYGG 2 cut(s) 318, 966
BstEII GGTNACC 1 cut(s) 1382
BstENI CCTNNNNNAGG 1 cut(s) 699
BstF5I GGATG 6 cut(s) 96, 233, 334, 360, 1054, 1228
BstFNI CGCG 1 cut(s) 968
BstH2I RGCGCY 2 cut(s) 675, 2030
BstHHI GCGC 2 cut(s) 674, 2029
BstKTI GATC 8 cut(s) 212, 493, 542, 1820, 2182, 2315, 2377, 2737
BstMAI GTCTC 6 cut(s) 185, 363, 373, 1629, 2212, 2364
BstMBI GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
BstMWI GCNNNNNNNGC 5 cut(s) 21, 49, 1214, 2248, 2285
BstNSI RCATGY 1 cut(s) 1025
BstPI GGTNACC 1 cut(s) 1382
BstSFI CTRYAG 3 cut(s) 499, 903, 1829
BstSLI GKGCMC 2 cut(s) 1186, 1693
BstUI CGCG 1 cut(s) 968
BstV1I GCAGC 7 cut(s) 24, 309, 357, 681, 1418, 2245, 2335
BstV2I GAAGAC 3 cut(s) 318, 723, 2462
BstX2I RGATCY 5 cut(s) 209, 1817, 2179, 2312, 2734
BstXI CCANNNNNNTGG 2 cut(s) 1379, 1778
BstYI RGATCY 5 cut(s) 209, 1817, 2179, 2312, 2734
BsuI GTATCC 1 cut(s) 2688
BsuRI GGCC 6 cut(s) 109, 1068, 1165, 1184, 1191, 2145
BtgI CCRYGG 2 cut(s) 318, 966
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 6 cut(s) 96, 233, 334, 360, 1054, 1228
BtsIMutI CAGTG 4 cut(s) 883, 1693, 1914, 2160
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 4 cut(s) 1609, 1738, 2214, 2431
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 1 cut(s) 1399
CfoI GCGC 2 cut(s) 674, 2029
Cfr13I GGNCC 7 cut(s) 396, 453, 1066, 1182, 1183, 1189, 2630
Cfr42I CCGCGG 1 cut(s) 969
Csp6I GTAC 3 cut(s) 1775, 2823, 2909
CviQI GTAC 3 cut(s) 1775, 2823, 2909
DdeI CTNAG 6 cut(s) 213, 1310, 1461, 2217, 2319, 2361
DpnI GATC 8 cut(s) 211, 492, 541, 1819, 2181, 2314, 2376, 2736
DpnII GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
DraI TTTAAA 5 cut(s) 1077, 1602, 2265, 2707, 2742
DrdI GACNNNNNNGTC 1 cut(s) 320
DriI GACNNNNNGTC 1 cut(s) 1123
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 6 cut(s) 31, 42, 886, 1539, 1668, 2601
Eam1105I GACNNNNNGTC 1 cut(s) 1123
EarI CTCTTC 6 cut(s) 31, 42, 886, 1539, 1668, 2601
EciI GGCGGA 1 cut(s) 2427
Eco130I CCWWGG 4 cut(s) 318, 2047, 2528, 2634
Eco24I GRGCYC 1 cut(s) 1186
Eco47I GGWCC 3 cut(s) 396, 453, 2630
Eco47III AGCGCT 1 cut(s) 2028
Eco57I CTGAAG 4 cut(s) 66, 1749, 1773, 2328
Eco72I CACGTG 1 cut(s) 1169
Eco91I GGTNACC 1 cut(s) 1382
EcoNI CCTNNNNNAGG 1 cut(s) 699
EcoO109I RGGNCCY 1 cut(s) 1183
EcoO65I GGTNACC 1 cut(s) 1382
EcoT14I CCWWGG 4 cut(s) 318, 2047, 2528, 2634
EcoT22I ATGCAT 2 cut(s) 2281, 2782
EcoT38I GRGCYC 1 cut(s) 1186
ErhI CCWWGG 4 cut(s) 318, 2047, 2528, 2634
Esp3I CGTCTC 1 cut(s) 185
FalI AAGNNNNNCTT 6 cut(s) 883, 915, 2040, 2072, 2418, 2450
FaqI GGGAC 5 cut(s) 382, 719, 869, 887, 2616
FauI CCCGC 3 cut(s) 94, 938, 961
FauNDI CATATG 2 cut(s) 2371, 2917
Fnu4HI GCNGC 9 cut(s) 13, 295, 298, 346, 670, 966, 1407, 2259, 2324
FokI GGATG 6 cut(s) 103, 220, 341, 367, 1061, 1235
FriOI GRGCYC 1 cut(s) 1186
Fsp4HI GCNGC 9 cut(s) 13, 295, 298, 346, 670, 966, 1407, 2259, 2324
FspBI CTAG 6 cut(s) 768, 783, 1737, 1905, 2135, 2529
GlaI GCGC 2 cut(s) 673, 2028
GluI GCNGC 9 cut(s) 13, 295, 298, 346, 670, 966, 1407, 2259, 2324
GsaI CCCAGC 2 cut(s) 649, 2039
GsuI CTGGAG 4 cut(s) 132, 496, 1611, 2136
HaeII RGCGCY 2 cut(s) 675, 2030
HaeIII GGCC 6 cut(s) 109, 1068, 1165, 1184, 1191, 2145
HapII CCGG 3 cut(s) 1304, 1502, 2831
HhaI GCGC 2 cut(s) 674, 2029
Hin6I GCGC 2 cut(s) 672, 2027
HinP1I GCGC 2 cut(s) 672, 2027
HincII GTYRAC 1 cut(s) 2809
HindII GTYRAC 1 cut(s) 2809
HindIII AAGCTT 1 cut(s) 243
HpaII CCGG 3 cut(s) 1304, 1502, 2831
HphI GGTGA 3 cut(s) 791, 953, 1394
Hpy166II GTNNAC 3 cut(s) 926, 1691, 2809
Hpy8I GTNNAC 3 cut(s) 926, 1691, 2809
HpyCH4III ACNGT 5 cut(s) 878, 1073, 1437, 1688, 2870
HpyCH4IV ACGT 4 cut(s) 133, 1168, 1652, 2698
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 49, 1214, 2248, 2285
HpyF3I CTNAG 6 cut(s) 213, 1310, 1461, 2217, 2319, 2361
HpySE526I ACGT 4 cut(s) 133, 1168, 1652, 2698
HspAI GCGC 2 cut(s) 672, 2027
Kpn2I TCCGGA 1 cut(s) 1303
KpnI GGTACC 1 cut(s) 2826
KspI CCGCGG 1 cut(s) 969
Kzo9I GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
LguI GCTCTTC 4 cut(s) 31, 42, 1539, 1668
LmnI GCTCC 4 cut(s) 414, 477, 1306, 2293
Lsp1109I GCAGC 7 cut(s) 24, 309, 357, 681, 1418, 2245, 2335
LweI GCATC 6 cut(s) 55, 575, 788, 886, 1195, 2767
MaeI CTAG 6 cut(s) 768, 783, 1737, 1905, 2135, 2529
MaeII ACGT 4 cut(s) 133, 1168, 1652, 2698
MalI GATC 8 cut(s) 211, 492, 541, 1819, 2181, 2314, 2376, 2736
MboI GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
MfeI CAATTG 1 cut(s) 1890
MflI RGATCY 5 cut(s) 209, 1817, 2179, 2312, 2734
MhlI GDGCHC 2 cut(s) 1186, 1693
MlyI GAGTC 5 cut(s) 308, 493, 1153, 1243, 1268
MmeI TCCRAC 4 cut(s) 68, 392, 959, 1680
Mph1103I ATGCAT 2 cut(s) 2281, 2782
MroI TCCGGA 1 cut(s) 1303
MroXI GAANNNNTTC 1 cut(s) 730
MslI CAYNNNNRTG 5 cut(s) 273, 353, 663, 1435, 1782
MspA1I CMGCKG 1 cut(s) 968
MspCI CTTAAG 1 cut(s) 2399
MspI CCGG 3 cut(s) 1304, 1502, 2831
MunI CAATTG 1 cut(s) 1890
Mva1269I GAATGC 2 cut(s) 1891, 2290
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 5 cut(s) 21, 49, 1214, 2248, 2285
NciI CCSGG 1 cut(s) 2832
NcoI CCATGG 1 cut(s) 318
NdeI CATATG 2 cut(s) 2371, 2917
NdeII GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
NheI GCTAGC 1 cut(s) 1736
NlaIV GGNNCC 4 cut(s) 398, 1184, 2632, 2824
NmuCI GTSAC 8 cut(s) 1017, 1041, 1246, 1382, 1553, 1682, 1944, 2815
NsiI ATGCAT 2 cut(s) 2281, 2782
NspI RCATGY 1 cut(s) 1025
OliI CACNNNNGTG 1 cut(s) 1435
PagI TCATGA 1 cut(s) 1399
PasI CCCWGGG 1 cut(s) 1186
PciSI GCTCTTC 4 cut(s) 31, 42, 1539, 1668
PctI GAATGC 2 cut(s) 1891, 2290
PdmI GAANNNNTTC 1 cut(s) 730
PfeI GAWTC 8 cut(s) 125, 509, 1130, 1241, 1703, 2120, 2506, 2551
PflMI CCANNNNNTGG 6 cut(s) 83, 155, 324, 494, 1172, 1877
PkrI GCNGC 9 cut(s) 14, 296, 299, 347, 671, 967, 1408, 2260, 2325
PleI GAGTC 5 cut(s) 308, 492, 1152, 1243, 1267
PmaCI CACGTG 1 cut(s) 1169
PmlI CACGTG 1 cut(s) 1169
PpsI GAGTC 5 cut(s) 308, 492, 1152, 1243, 1267
Ppu21I YACGTR 2 cut(s) 1169, 2699
PshBI ATTAAT 2 cut(s) 756, 1587
PspCI CACGTG 1 cut(s) 1169
PspEI GGTNACC 1 cut(s) 1382
PspFI CCCAGC 2 cut(s) 645, 2035
PspN4I GGNNCC 4 cut(s) 398, 1184, 2632, 2824
PspOMI GGGCCC 1 cut(s) 1182
PspPI GGNCC 7 cut(s) 396, 453, 1066, 1182, 1183, 1189, 2630
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 5 cut(s) 209, 1817, 2179, 2312, 2734
RsaI GTAC 3 cut(s) 1776, 2824, 2910
RsaNI GTAC 3 cut(s) 1775, 2823, 2909
RseI CAYNNNNRTG 5 cut(s) 273, 353, 663, 1435, 1782
SacII CCGCGG 1 cut(s) 969
SapI GCTCTTC 4 cut(s) 31, 42, 1539, 1668
SatI GCNGC 9 cut(s) 13, 295, 298, 346, 670, 966, 1407, 2259, 2324
Sau3AI GATC 8 cut(s) 209, 490, 539, 1817, 2179, 2312, 2374, 2734
Sau96I GGNCC 7 cut(s) 396, 453, 1066, 1182, 1183, 1189, 2630
SchI GAGTC 5 cut(s) 308, 493, 1153, 1243, 1268
SduI GDGCHC 2 cut(s) 1186, 1693
SfaNI GCATC 6 cut(s) 55, 575, 788, 886, 1195, 2767
SfcI CTRYAG 3 cut(s) 499, 903, 1829
Sfr303I CCGCGG 1 cut(s) 969
SgrBI CCGCGG 1 cut(s) 969
SinI GGWCC 3 cut(s) 396, 453, 2630
SmiI ATTTAAAT 1 cut(s) 2707
SmiMI CAYNNNNRTG 5 cut(s) 273, 353, 663, 1435, 1782
SmlI CTYRAG 3 cut(s) 555, 2399, 2678
SmoI CTYRAG 3 cut(s) 555, 2399, 2678
SpeI ACTAGT 1 cut(s) 2134
SsiI CCGC 6 cut(s) 101, 294, 931, 966, 968, 2438
SspI AATATT 5 cut(s) 683, 1294, 1534, 1663, 2842
SspMI CTAG 6 cut(s) 768, 783, 1737, 1905, 2135, 2529
StyI CCWWGG 4 cut(s) 318, 2047, 2528, 2634
SwaI ATTTAAAT 1 cut(s) 2707
TaaI ACNGT 5 cut(s) 878, 1073, 1437, 1688, 2870
TaiI ACGT 4 cut(s) 136, 1171, 1655, 2701
TaqI TCGA 4 cut(s) 1105, 1316, 1580, 1756
TaqII GACCGA 1 cut(s) 384
TatI WGTACW 1 cut(s) 2908
TauI GCSGC 2 cut(s) 297, 968
TfiI GAWTC 8 cut(s) 125, 509, 1130, 1241, 1703, 2120, 2506, 2551
TscAI CASTG 4 cut(s) 883, 1693, 1921, 2160
TseFI GTSAC 8 cut(s) 1017, 1041, 1246, 1382, 1553, 1682, 1944, 2815
TseI GCWGC 7 cut(s) 12, 297, 345, 669, 1406, 2258, 2323
Tsp45I GTSAC 8 cut(s) 1017, 1041, 1246, 1382, 1553, 1682, 1944, 2815
TspGWI ACGGA 2 cut(s) 1113, 1302
TspRI CASTG 4 cut(s) 883, 1693, 1921, 2160
Van91I CCANNNNNTGG 6 cut(s) 83, 155, 324, 494, 1172, 1877
Vha464I CTTAAG 1 cut(s) 2399
VneI GTGCAC 1 cut(s) 1689
VpaK11BI GGWCC 3 cut(s) 396, 453, 2630
VspI ATTAAT 2 cut(s) 756, 1587
XagI CCTNNNNNAGG 1 cut(s) 699
XapI RAATTY 4 cut(s) 956, 1575, 2266, 2708
XceI RCATGY 1 cut(s) 1025
XcmI CCANNNNNNNNNTGG 4 cut(s) 84, 1097, 1220, 1778
XmaJI CCTAGG 1 cut(s) 2528
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 6 cut(s) 768, 783, 1737, 1905, 2135, 2529
Zsp2I ATGCAT 2 cut(s) 2281, 2782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.