AT2G16050

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004809
Physical Location & Seq
Forward (+)
6980218 .. 6982132
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16050.1

Sequence Viewer

Length: 732 bp
ATGAAATACGCAGATATATCACATTTTAGTCACCCTCAACACAACCTCAAATTCGACTACACGGAGAAACCCTTCAAATGTGATGGATGCAATGAAGTTGGTATCGGCTCTCGCTATCGCTGCTCCGGTGATAATCATGGAAGCTGTGATTTTGATCTCCATGCGCACTGTGCCCTGCCCTCAGCGTCCATAACACATCCGTTCTACAAAAAGTGTACGTTTCAGTTTGTGGCGCGGCCACCAGGGAACGAAAGACGGTACTGCAATGCGTGCGAGAAGGATGTATCGGGGTTTTTGTACCATTGCAAGGCTTGTGGGTTTGATCTTCACCCGTGTTGCGCTATGCTTCCTATGGTTTTGGACGATGGAGAGACCAATCTCTTTCTTTATCGTAAAGTTAGTTCGTCTTGTCATCGATGTGGAAAAAAAGGCCGTAGCTGGAGTTACAGGTCATCTTGCAAAAAGTACAATCTCCATGTCGCGTGTGTGAGAGAGATGTTGGTGGAGAATTGGCGAGAGCTGTACACAGGACAACATGGTAAAAGCATTGAACACAAGAGCCTGGTCTTAAAGAACACACTTGAGCATCACCACCGTAGCAGCCGCAAAGGTAAAGTTCAAAAATGCTGCGAGATCGCCGGTATAGCCGTGCAGTTTGTCATTTCCGCCGTACTCGGGGATCCAACGACCCTAATCGCGGGAGTTGTAGGCTCCCTTATTTCTCGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

243

Amino Acids

27.34

Weight (kDa)

8.89

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 58 1.5e-07 C1 domain
C1_2 PF03107 73 - 114 1.1e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 165
AccII CGCG 3 cut(s) 235, 482, 698
AciI CCGC 4 cut(s) 235, 604, 666, 698
AclWI GGATC 2 cut(s) 674, 687
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 6 cut(s) 217, 260, 299, 467, 524, 672
AfiI CCNNNNNNNGG 3 cut(s) 307, 675, 697
AgsI TTSAA 3 cut(s) 76, 551, 620
AjnI CCWGG 2 cut(s) 241, 561
AluBI AGCT 3 cut(s) 144, 438, 520
AluI AGCT 3 cut(s) 144, 438, 520
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 674, 687
Ama87I CYCGRG 2 cut(s) 674, 723
AoxI GGCC 2 cut(s) 236, 430
ApeKI GCWGC 3 cut(s) 120, 600, 627
ApoI RAATTY 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 3 cut(s) 166, 235, 341
AsuHPI GGTGA 4 cut(s) 23, 140, 320, 581
AvaI CYCGRG 2 cut(s) 674, 723
BaeGI GKGCMC 1 cut(s) 175
BamHI GGATCC 1 cut(s) 679
BbvCI CCTCAGC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 107, 612, 614
BccI CCATC 2 cut(s) 77, 359
BceAI ACGGC 3 cut(s) 417, 632, 653
BciT130I CCWGG 2 cut(s) 243, 563
BcoDI GTCTC 1 cut(s) 365
BisI GCNGC 5 cut(s) 121, 236, 601, 604, 628
BlsI GCNGC 5 cut(s) 122, 237, 602, 605, 629
Bme1390I CCNGG 2 cut(s) 243, 563
BmeT110I CYCGRG 2 cut(s) 674, 723
BmiI GGNNCC 2 cut(s) 681, 712
BmrFI CCNGG 2 cut(s) 243, 563
BmsI GCATC 2 cut(s) 77, 595
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 415
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 675, 697
Bse118I RCCGGY 1 cut(s) 638
Bse3DI GCAATG 3 cut(s) 97, 271, 301
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 2 cut(s) 243, 563
BseCI ATCGAT 1 cut(s) 415
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 3 cut(s) 92, 196, 286
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 3 cut(s) 307, 675, 697
BseMI GCAATG 3 cut(s) 97, 271, 301
BseMII CTCAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 3 cut(s) 107, 612, 614
BsgI GTGCAG 1 cut(s) 671
Bsh1236I CGCG 3 cut(s) 235, 482, 698
BshFI GGCC 2 cut(s) 238, 432
BshVI ATCGAT 1 cut(s) 415
BsiHKCI CYCGRG 2 cut(s) 674, 723
BsiSI CCGG 2 cut(s) 126, 639
BslI CCNNNNNNNGG 3 cut(s) 307, 675, 697
BsmAI GTCTC 1 cut(s) 365
BsnI GGCC 2 cut(s) 238, 432
Bso31I GGTCTC 1 cut(s) 365
BsoBI CYCGRG 2 cut(s) 674, 723
Bsp1286I GDGCHC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 4 cut(s) 154, 322, 633, 679
BspACI CCGC 4 cut(s) 235, 604, 666, 698
BspANI GGCC 2 cut(s) 238, 432
BspCNI CTCAG 1 cut(s) 194
BspDI ATCGAT 1 cut(s) 415
BspFNI CGCG 3 cut(s) 235, 482, 698
BspLI GGNNCC 2 cut(s) 681, 712
BspPI GGATC 2 cut(s) 674, 687
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 3 cut(s) 97, 271, 301
BsrFI RCCGGY 1 cut(s) 638
BsrGI TGTACA 1 cut(s) 522
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 4 cut(s) 154, 322, 633, 679
Bst2UI CCWGG 2 cut(s) 243, 563
Bst4CI ACNGT 3 cut(s) 170, 258, 596
BstAPI GCANNNNNTGC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 3 cut(s) 92, 196, 286
BstFNI CGCG 3 cut(s) 235, 482, 698
BstHHI GCGC 3 cut(s) 166, 235, 341
BstKTI GATC 4 cut(s) 157, 325, 636, 682
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 154, 322, 633, 679
BstMWI GCNNNNNNNGC 4 cut(s) 120, 170, 270, 644
BstNI CCWGG 2 cut(s) 243, 563
BstSCI CCNGG 2 cut(s) 241, 561
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 3 cut(s) 235, 482, 698
BstV1I GCAGC 3 cut(s) 107, 612, 614
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
Bsu15I ATCGAT 1 cut(s) 415
BsuRI GGCC 2 cut(s) 238, 432
BsuTUI ATCGAT 1 cut(s) 415
BtsCI GGATG 3 cut(s) 92, 196, 286
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 271
CfoI GCGC 3 cut(s) 166, 235, 341
Cfr10I RCCGGY 1 cut(s) 638
ClaI ATCGAT 1 cut(s) 415
CseI GACGC 1 cut(s) 174
Csp6I GTAC 6 cut(s) 216, 259, 298, 466, 523, 671
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 4 cut(s) 137, 161, 476, 536
CviQI GTAC 6 cut(s) 216, 259, 298, 466, 523, 671
DdeI CTNAG 1 cut(s) 181
DpnI GATC 4 cut(s) 156, 324, 635, 681
DpnII GATC 4 cut(s) 154, 322, 633, 679
EaeI YGGCCR 1 cut(s) 236
EciI GGCGGA 1 cut(s) 655
Eco31I GGTCTC 1 cut(s) 365
Eco88I CYCGRG 2 cut(s) 674, 723
EcoRII CCWGG 2 cut(s) 241, 561
FaeI CATG 4 cut(s) 140, 164, 479, 539
FaiI YATR 9 cut(s) 17, 138, 162, 191, 344, 353, 477, 537, 644
FatI CATG 4 cut(s) 136, 160, 475, 535
FauI CCCGC 1 cut(s) 691
Fnu4HI GCNGC 5 cut(s) 121, 236, 601, 604, 628
FokI GGATG 3 cut(s) 99, 183, 293
Fsp4HI GCNGC 5 cut(s) 121, 236, 601, 604, 628
FspAI RTGCGCAY 1 cut(s) 165
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 3 cut(s) 165, 234, 340
GluI GCNGC 5 cut(s) 121, 236, 601, 604, 628
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 2 cut(s) 238, 432
HapII CCGG 2 cut(s) 126, 639
HgaI GACGC 1 cut(s) 174
HhaI GCGC 3 cut(s) 166, 235, 341
Hin1II CATG 4 cut(s) 140, 164, 479, 539
Hin6I GCGC 3 cut(s) 164, 233, 339
HinP1I GCGC 3 cut(s) 164, 233, 339
HpaII CCGG 2 cut(s) 126, 639
HphI GGTGA 4 cut(s) 23, 140, 320, 581
Hpy166II GTNNAC 2 cut(s) 216, 525
Hpy188III TCNNGA 1 cut(s) 723
Hpy8I GTNNAC 2 cut(s) 216, 525
HpyAV CCTTC 2 cut(s) 82, 271
HpyCH4III ACNGT 3 cut(s) 170, 258, 596
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 5 cut(s) 90, 264, 306, 459, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 170, 270, 644
HpyF3I CTNAG 1 cut(s) 181
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 4 cut(s) 140, 164, 479, 539
HspAI GCGC 3 cut(s) 164, 233, 339
Kzo9I GATC 4 cut(s) 154, 322, 633, 679
LmnI GCTCC 2 cut(s) 128, 716
Lsp1109I GCAGC 3 cut(s) 107, 612, 614
LweI GCATC 2 cut(s) 77, 595
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 29, 443
MalI GATC 4 cut(s) 156, 324, 635, 681
MboI GATC 4 cut(s) 154, 322, 633, 679
MboII GAAGA 1 cut(s) 317
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 2 cut(s) 50, 508
MmeI TCCRAC 1 cut(s) 707
MnlI CCTC 4 cut(s) 45, 56, 190, 719
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 2 cut(s) 126, 639
MspR9I CCNGG 2 cut(s) 243, 563
MvaI CCWGG 2 cut(s) 243, 563
MvnI CGCG 3 cut(s) 235, 482, 698
MwoI GCNNNNNNNGC 4 cut(s) 120, 170, 270, 644
NdeII GATC 4 cut(s) 154, 322, 633, 679
NlaIII CATG 4 cut(s) 140, 164, 479, 539
NlaIV GGNNCC 2 cut(s) 681, 712
NmuCI GTSAC 1 cut(s) 29
NsbI TGCGCA 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 723
PdmI GAANNNNTTC 1 cut(s) 71
PkrI GCNGC 5 cut(s) 122, 237, 602, 605, 629
Psp6I CCWGG 2 cut(s) 241, 561
PspGI CCWGG 2 cut(s) 241, 561
PspN4I GGNNCC 2 cut(s) 681, 712
PsrI GAACNNNNNNTAC 2 cut(s) 385, 417
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 6 cut(s) 217, 260, 299, 467, 524, 672
RsaNI GTAC 6 cut(s) 216, 259, 298, 466, 523, 671
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 5 cut(s) 121, 236, 601, 604, 628
Sau3AI GATC 4 cut(s) 154, 322, 633, 679
ScrFI CCNGG 2 cut(s) 243, 563
SduI GDGCHC 1 cut(s) 175
SetI ASST 7 cut(s) 48, 146, 221, 440, 452, 522, 613
SfaNI GCATC 2 cut(s) 77, 595
Sfr274I CTCGAG 1 cut(s) 723
SlaI CTCGAG 1 cut(s) 723
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 581, 723
SmoI CTYRAG 2 cut(s) 581, 723
Sse9I AATT 2 cut(s) 50, 508
SsiI CCGC 4 cut(s) 235, 604, 666, 698
StyD4I CCNGG 2 cut(s) 241, 561
TaaI ACNGT 3 cut(s) 170, 258, 596
TaiI ACGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 54, 415, 724
TasI AATT 2 cut(s) 50, 508
TatI WGTACW 2 cut(s) 465, 522
TauI GCSGC 2 cut(s) 238, 606
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 3 cut(s) 120, 600, 627
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 17, 108
TspGWI ACGGA 2 cut(s) 77, 189
TspRI CASTG 1 cut(s) 173
XapI RAATTY 1 cut(s) 50
XhoI CTCGAG 1 cut(s) 723
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.