Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Forward (+)

15935125 .. 15936182

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAAGATTGACAAGGAAATCTCTCATCCCATCCACCTAAAACACAAGCTCAAGATCGAATACACCGAGGTCCCGTTCTACTGCGACGGGTGCAAAGAAGCCGGAATTGGCCTCAAATACAAGTGCCAGCAATGTGAGTTTGATTTGCACAAGGCATGTGCTGTGGCTCCTCCAACCATCACCCACCCCTTCTACGACAAATTGTGTGATGCATGTAGGAAGGATGTTGTAGGGTTTGTGTACCACTGCAGGAAGTGCGGTTTTGATCTGCACCCCTGTTGTGCCAACCTCCCACAAGTCCTGGATGACGGTGAGCGCAACTTTTACTTGTACCTCAAGTTATCGAGCGCTTGTCATCGGTGTGGAGGCAAGGGGCGTGGTTGGTGTTATAGGTCGGAATGCAAGACGTATAATCTTCATGTGTCATGTGTGAAGGAGTTGCTTGTGGAGAGCTGGCAAGCCATGTATCTGAATGTGGACAAGAACAAGGTTAGGGAAATGCAGACTAGGATCCCGAGCCTTAAGGGGACGCTGAAAAACCACCACGGCGGAGGGAGAGGCGAGAAGGTCAGAAAGTGTTGCGAGATAGCTGGTGGCGCTGTTCGCATCATTGTCTCTGCCATACTTGGAGATCCTAGCAGAGTGCAGAAAATTGAAAACAAGTACATGTTTGGTATTTCTGTTTCTTCATGTTGTTGTGTTGTATTTGTTACTTTGTTTCATGTGAATGCCGAGTACTGTGTGAATGATTGGGACTACGTGTCCTCCATATCTGCGTACTTCGTTATATTTGTGAAAAAAATATGGATTGTCTTTTTTTTTAGAGATTTAAACTTGGGTGCAGAAGGGCACACGGCTTTAACTAACTTGACTAATTCCAGGTTTGTGGATTGTCTTTTCTTAATCCAATATATTAATTTTCGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

310

Amino Acids

35.32

Weight (kDa)

8.72

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	11 - 54	3.2e-08	C1 domain
C1_2	PF03107	66 - 95	9e-06	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	258, 549
AclWI	GGATC	3 cut(s)	505, 518, 626
AfaI	GTAC	5 cut(s)	242, 332, 665, 737, 779
AfeI	AGCGCT	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	521
AflIII	ACRYGT	2 cut(s)	666, 759
AgsI	TTSAA	1 cut(s)	656
AhdI	GACNNNNNGTC	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	300, 878
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	3 cut(s)	49, 453, 590
AluI	AGCT	3 cut(s)	49, 453, 590
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	3 cut(s)	505, 518, 626
Ama87I	CYCGRG	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	1 cut(s)	109
AseI	ATTAAT	1 cut(s)	915
AspLEI	GCGC	3 cut(s)	318, 350, 599
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	172, 323
AvaI	CYCGRG	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	852
BamHI	GGATCC	1 cut(s)	510
BccI	CCATC	2 cut(s)	38, 185
BceAI	ACGGC	2 cut(s)	562, 870
BciT130I	CCWGG	2 cut(s)	302, 880
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	2 cut(s)	507, 636
BfmI	CTRYAG	1 cut(s)	247
BfoI	RGCGCY	2 cut(s)	351, 600
BfrI	CTTAAG	1 cut(s)	521
BmcAI	AGTACT	1 cut(s)	737
Bme1390I	CCNGG	2 cut(s)	302, 880
Bme18I	GGWCC	1 cut(s)	70
BmeRI	GACNNNNNGTC	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	3 cut(s)	72, 168, 512
BmrFI	CCNGG	2 cut(s)	302, 880
BmsI	GCATC	2 cut(s)	199, 615
BpuEI	CTTGAG	2 cut(s)	35, 320
BsaAI	YACGTR	1 cut(s)	760
BsaJI	CCNNGG	2 cut(s)	66, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	302, 880
BseDI	CCNNGG	2 cut(s)	66, 544
BseGI	GGATG	4 cut(s)	25, 30, 229, 310
BseMI	GCAATG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	852
BsgI	GTGCAG	3 cut(s)	254, 665, 861
BshFI	GGCC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	3 cut(s)	56, 541, 767
BsmAI	GTCTC	1 cut(s)	619
BsmFI	GGGAC	3 cut(s)	56, 541, 767
BsmI	GAATGC	2 cut(s)	404, 733
BsnI	GGCC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	852
Bsp143I	GATC	4 cut(s)	54, 265, 510, 631
BspACI	CCGC	2 cut(s)	258, 549
BspANI	GGCC	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	72, 168, 512
BspMAI	CTGCAG	1 cut(s)	251
BspPI	GGATC	3 cut(s)	505, 518, 626
BspTI	CTTAAG	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	66, 544
BssMI	GATC	4 cut(s)	54, 265, 510, 631
Bst2UI	CCWGG	2 cut(s)	302, 880
Bst4CI	ACNGT	2 cut(s)	311, 740
BstAFI	CTTAAG	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	760
BstC8I	GCNNGC	3 cut(s)	128, 455, 459
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	4 cut(s)	25, 30, 229, 310
BstH2I	RGCGCY	2 cut(s)	351, 600
BstHHI	GCGC	3 cut(s)	318, 350, 599
BstKTI	GATC	4 cut(s)	57, 268, 513, 634
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	4 cut(s)	54, 265, 510, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 255, 596, 603
BstNI	CCWGG	2 cut(s)	302, 880
BstNSI	RCATGY	3 cut(s)	159, 216, 670
BstSCI	CCNGG	2 cut(s)	300, 878
BstSFI	CTRYAG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	852
BstX2I	RGATCY	2 cut(s)	510, 631
BstXI	CCANNNNNNTGG	1 cut(s)	886
BstYI	RGATCY	2 cut(s)	510, 631
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	4 cut(s)	25, 30, 229, 310
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	3 cut(s)	128, 455, 459
CfoI	GCGC	3 cut(s)	318, 350, 599
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	5 cut(s)	241, 331, 664, 736, 778
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	8 cut(s)	156, 213, 419, 426, 463, 667, 690, 722
CviJI	RGCY	9 cut(s)	49, 101, 111, 167, 453, 461, 519, 590, 857
CviKI_1	RGCY	9 cut(s)	49, 101, 111, 167, 453, 461, 519, 590, 857
CviQI	GTAC	5 cut(s)	241, 331, 664, 736, 778
DpnI	GATC	4 cut(s)	56, 267, 512, 633
DpnII	GATC	4 cut(s)	54, 265, 510, 631
DraI	TTTAAA	1 cut(s)	831
DriI	GACNNNNNGTC	1 cut(s)	760
Eam1105I	GACNNNNNGTC	1 cut(s)	760
EciI	GGCGGA	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	70
Eco47III	AGCGCT	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	300, 878
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	8 cut(s)	159, 216, 422, 429, 466, 670, 693, 725
FaqI	GGGAC	3 cut(s)	56, 541, 767
FatI	CATG	8 cut(s)	155, 212, 418, 425, 462, 666, 689, 721
FokI	GGATG	4 cut(s)	12, 17, 236, 317
FspBI	CTAG	2 cut(s)	507, 636
GlaI	GCGC	3 cut(s)	317, 349, 598
HaeII	RGCGCY	2 cut(s)	351, 600
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	3 cut(s)	318, 350, 599
Hin1II	CATG	8 cut(s)	159, 216, 422, 429, 466, 670, 693, 725
Hin6I	GCGC	3 cut(s)	316, 348, 597
HinP1I	GCGC	3 cut(s)	316, 348, 597
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	172, 323
Hpy166II	GTNNAC	2 cut(s)	241, 478
Hpy188I	TCNGA	4 cut(s)	397, 471, 572, 924
Hpy188III	TCNNGA	2 cut(s)	52, 514
Hpy8I	GTNNAC	2 cut(s)	241, 478
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	5 cut(s)	199, 214, 427, 559, 839
HpyCH4III	ACNGT	2 cut(s)	311, 740
HpyCH4IV	ACGT	2 cut(s)	407, 759
HpyCH4V	TGCA	9 cut(s)	93, 148, 212, 249, 271, 402, 502, 646, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 255, 596, 603
HpySE526I	ACGT	2 cut(s)	407, 759
Hsp92II	CATG	8 cut(s)	159, 216, 422, 429, 466, 670, 693, 725
HspAI	GCGC	3 cut(s)	316, 348, 597
Kzo9I	GATC	4 cut(s)	54, 265, 510, 631
LmnI	GCTCC	1 cut(s)	172
LweI	GCATC	2 cut(s)	199, 615
MaeI	CTAG	2 cut(s)	507, 636
MaeII	ACGT	2 cut(s)	407, 759
MaeIII	GTNAC	1 cut(s)	709
MalI	GATC	4 cut(s)	56, 267, 512, 633
MboI	GATC	4 cut(s)	54, 265, 510, 631
MboII	GAAGA	3 cut(s)	16, 407, 678
MflI	RGATCY	2 cut(s)	510, 631
MhlI	GDGCHC	1 cut(s)	852
MluCI	AATT	5 cut(s)	105, 200, 651, 874, 916
MmeI	TCCRAC	2 cut(s)	197, 375
MnlI	CCTC	9 cut(s)	61, 122, 180, 299, 344, 359, 545, 551, 775
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	5 cut(s)	522, 830, 860, 902, 915
MslI	CAYNNNNRTG	2 cut(s)	360, 726
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	302, 880
Mva1269I	GAATGC	2 cut(s)	404, 733
MvaI	CCWGG	2 cut(s)	302, 880
MwoI	GCNNNNNNNGC	4 cut(s)	90, 255, 596, 603
NdeII	GATC	4 cut(s)	54, 265, 510, 631
NlaIII	CATG	8 cut(s)	159, 216, 422, 429, 466, 670, 693, 725
NlaIV	GGNNCC	3 cut(s)	72, 168, 512
NmeAIII	GCCGAG	1 cut(s)	757
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	3 cut(s)	159, 216, 670
PciI	ACATGT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	404, 733
PfoI	TCCNGGA	1 cut(s)	300
Ppu21I	YACGTR	1 cut(s)	760
PpuMI	RGGWCCY	1 cut(s)	70
PscI	ACATGT	1 cut(s)	666
PshBI	ATTAAT	1 cut(s)	915
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	300, 878
PspGI	CCWGG	2 cut(s)	300, 878
PspN4I	GGNNCC	3 cut(s)	72, 168, 512
PspPI	GGNCC	1 cut(s)	70
PspPPI	RGGWCCY	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	510, 631
RsaI	GTAC	5 cut(s)	242, 332, 665, 737, 779
RsaNI	GTAC	5 cut(s)	241, 331, 664, 736, 778
RseI	CAYNNNNRTG	2 cut(s)	360, 726
SaqAI	TTAA	5 cut(s)	522, 830, 860, 902, 915
Sau3AI	GATC	4 cut(s)	54, 265, 510, 631
Sau96I	GGNCC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	302, 880
SduI	GDGCHC	1 cut(s)	852
SfaNI	GCATC	2 cut(s)	199, 615
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	360, 726
SmlI	CTYRAG	3 cut(s)	50, 335, 521
SmoI	CTYRAG	3 cut(s)	50, 335, 521
Sse9I	AATT	5 cut(s)	105, 200, 651, 874, 916
SsiI	CCGC	2 cut(s)	258, 549
SspMI	CTAG	2 cut(s)	507, 636
StyD4I	CCNGG	2 cut(s)	300, 878
TaaI	ACNGT	2 cut(s)	311, 740
TaiI	ACGT	2 cut(s)	410, 762
TaqI	TCGA	2 cut(s)	57, 344
TasI	AATT	5 cut(s)	105, 200, 651, 874, 916
TatI	WGTACW	2 cut(s)	663, 735
Tru1I	TTAA	5 cut(s)	522, 830, 860, 902, 915
Tru9I	TTAA	5 cut(s)	522, 830, 860, 902, 915
TscAI	CASTG	1 cut(s)	251
TspDTI	ATGAA	4 cut(s)	17, 407, 678, 710
TspRI	CASTG	1 cut(s)	251
Vha464I	CTTAAG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	70
VspI	ATTAAT	1 cut(s)	915
XceI	RCATGY	3 cut(s)	159, 216, 670
XspI	CTAG	2 cut(s)	507, 636
ZrmI	AGTACT	1 cut(s)	737
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.