RchiOBHm_Chr6g0262061

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004809
Physical Location & Seq
Forward (+)
16755115 .. 16755958
844 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23500

Sequence Viewer

Length: 729 bp
ATGAAATACAATGAGATATCCCACTTCAGCCATCCCCAACACAAGCTCAAGTTTGAGTACACAGAAATTCCATTCAAGTGCGATGGCTGCAAGGAAGTAGGCATAGGCTCGTGCTACAAGTGCGCCACATGCGACTTCGATCTCCACATGCACTGCGCCATACCCACTCCTTCTATCTTCCACCCTTTCTACACCAAGTGCTCCTTCCAGTTCCTCTCCCGAGCACCTGGGGACTCCCCGCGCTATTGCAATGCCTGCGAGAAGGACATAACTGGGTTCGTGTACCATTGCAGGTCCTGCGGGTTCGACCTCCACCCATGCTGTGCGAAGCTCCCCATGGTGCTGGACGATGGGGAGGTCAAGCTCTACCTGTATCGGAAAGTGAGCAGCTCCTGCCATAGGTGTGGGCGCAAAGGGCGGAGCTGGAGTTATAGGTCGAAATGCAAGAAGTACAATTTGCATGTGGCATGTGTGAAGGAAATGCTTGTGGAGAATTGGCATGAGTTTTTGGGCTCACATGGGAAGAGTAGAACTAGTAGGAAACTGGAGATGACTAGAATTCCTACCCTCAGGAATATGCTTCAGAGCCACCACCATAAGAGCAGAGGTAAAGTGAAGAAGTGTTGTGAGATGGCTGGGTTGGCCGTGCAGTTTGTGATATCGGCGGTGTTGGGTGATCCGACGACATTGATTGCTGGGGTTATTGGGTCACTGATGTCACGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

242

Amino Acids

27.53

Weight (kDa)

9.15

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 53 1.2e-09 C1 domain
C1_2 PF03107 72 - 109 3.3e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 282
AccII CGCG 1 cut(s) 241
AciI CCGC 4 cut(s) 239, 300, 418, 665
AclWI GGATC 1 cut(s) 671
AcoI YGGCCR 1 cut(s) 642
AcsI RAATTY 2 cut(s) 66, 558
AcuI CTGAAG 2 cut(s) 10, 566
AdeI CACNNNGTG 1 cut(s) 198
AfaI GTAC 3 cut(s) 59, 284, 452
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 1 cut(s) 76
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AleI CACNNNNGTG 1 cut(s) 724
AluBI AGCT 5 cut(s) 46, 331, 364, 390, 423
AluI AGCT 5 cut(s) 46, 331, 364, 390, 423
Alw21I GWGCWC 2 cut(s) 203, 226
AlwI GGATC 1 cut(s) 671
AlwNI CAGNNNCTG 2 cut(s) 297, 393
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 1 cut(s) 642
ApeKI GCWGC 2 cut(s) 87, 387
ApoI RAATTY 2 cut(s) 66, 558
AspLEI GCGC 4 cut(s) 125, 158, 243, 411
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 294
AxyI CCTNAGG 1 cut(s) 569
BanII GRGCYC 1 cut(s) 515
BauI CACGAG 2 cut(s) 109, 720
Bbv12I GWGCWC 2 cut(s) 203, 226
BbvI GCAGC 2 cut(s) 74, 399
BccI CCATC 4 cut(s) 39, 77, 344, 625
BceAI ACGGC 1 cut(s) 629
BciT130I CCWGG 1 cut(s) 228
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 2 cut(s) 534, 555
BfuAI ACCTGC 1 cut(s) 282
BisI GCNGC 2 cut(s) 88, 388
BlsI GCNGC 2 cut(s) 89, 389
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 282
BpmI CTGGAG 2 cut(s) 445, 566
BpuEI CTTGAG 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 227, 336
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 3 cut(s) 208, 277, 549
Bse21I CCTNAGG 1 cut(s) 569
Bse3DI GCAATG 2 cut(s) 256, 286
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 227, 336
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 2 cut(s) 256, 286
BseMII CTCAG 1 cut(s) 583
BseNI ACTGG 3 cut(s) 208, 277, 549
BseXI GCAGC 2 cut(s) 74, 399
BseYI CCCAGC 2 cut(s) 635, 695
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 1 cut(s) 644
BsiHKAI GWGCWC 2 cut(s) 203, 226
BsiHKCI CYCGRG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 3 cut(s) 203, 226, 515
Bsp143I GATC 2 cut(s) 139, 676
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 4 cut(s) 239, 300, 418, 665
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 1 cut(s) 582
BspFNI CGCG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 671
BsrDI GCAATG 2 cut(s) 256, 286
BsrI ACTGG 3 cut(s) 208, 277, 549
BssECI CCNNGG 2 cut(s) 227, 336
BssMI GATC 2 cut(s) 139, 676
BssSI CACGAG 2 cut(s) 109, 720
BssT1I CCWWGG 1 cut(s) 336
Bst2BI CACGAG 2 cut(s) 109, 720
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 518
BstAPI GCANNNNNTGC 3 cut(s) 255, 297, 393
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 569
BstDSI CCRYGG 1 cut(s) 336
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 4 cut(s) 125, 158, 243, 411
BstKTI GATC 2 cut(s) 142, 679
BstMBI GATC 2 cut(s) 139, 676
BstMWI GCNNNNNNNGC 8 cut(s) 87, 120, 129, 255, 297, 393, 415, 641
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 4 cut(s) 132, 151, 464, 471
BstSCI CCNGG 1 cut(s) 226
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 74, 399
BstXI CCANNNNNNTGG 2 cut(s) 343, 404
Bsu36I CCTNAGG 1 cut(s) 569
BsuRI GGCC 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 151, 710
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 256
CaiI CAGNNNCTG 2 cut(s) 297, 393
CfoI GCGC 4 cut(s) 125, 158, 243, 411
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 3 cut(s) 58, 283, 451
CviAII CATG 8 cut(s) 129, 148, 318, 337, 461, 468, 500, 518
CviQI GTAC 3 cut(s) 58, 283, 451
DdeI CTNAG 1 cut(s) 569
DpnI GATC 2 cut(s) 141, 678
DpnII GATC 2 cut(s) 139, 676
DraIII CACNNNGTG 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 642
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
EciI GGCGGA 1 cut(s) 433
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 515
Eco32I GATATC 2 cut(s) 18, 660
Eco47I GGWCC 1 cut(s) 294
Eco57I CTGAAG 2 cut(s) 10, 566
Eco81I CCTNAGG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 226
EcoRV GATATC 2 cut(s) 18, 660
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 8 cut(s) 132, 151, 321, 340, 464, 471, 503, 521
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 245
FatI CATG 8 cut(s) 128, 147, 317, 336, 460, 467, 499, 517
FauI CCCGC 2 cut(s) 246, 293
Fnu4HI GCNGC 2 cut(s) 88, 388
FokI GGATG 1 cut(s) 18
FriOI GRGCYC 1 cut(s) 515
Fsp4HI GCNGC 2 cut(s) 88, 388
FspBI CTAG 2 cut(s) 534, 555
GlaI GCGC 4 cut(s) 124, 157, 242, 410
GluI GCNGC 2 cut(s) 88, 388
GsaI CCCAGC 2 cut(s) 639, 699
GsuI CTGGAG 2 cut(s) 445, 566
HaeIII GGCC 1 cut(s) 644
HhaI GCGC 4 cut(s) 125, 158, 243, 411
Hin1II CATG 8 cut(s) 132, 151, 321, 340, 464, 471, 503, 521
Hin6I GCGC 4 cut(s) 123, 156, 241, 409
HinP1I GCGC 4 cut(s) 123, 156, 241, 409
HinfI GANTC 1 cut(s) 233
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 2 cut(s) 60, 283
Hpy188I TCNGA 3 cut(s) 378, 585, 681
Hpy188III TCNNGA 3 cut(s) 219, 571, 720
Hpy8I GTNNAC 2 cut(s) 60, 283
Hpy99I CGWCG 1 cut(s) 685
HpyAV CCTTC 4 cut(s) 180, 214, 256, 469
HpyCH4V TGCA 7 cut(s) 90, 151, 249, 291, 444, 460, 649
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 120, 129, 255, 297, 393, 415, 641
HpyF3I CTNAG 1 cut(s) 569
Hsp92II CATG 8 cut(s) 132, 151, 321, 340, 464, 471, 503, 521
HspAI GCGC 4 cut(s) 123, 156, 241, 409
Kzo9I GATC 2 cut(s) 139, 676
LmnI GCTCC 4 cut(s) 206, 336, 395, 420
Lsp1109I GCAGC 2 cut(s) 74, 399
MaeI CTAG 2 cut(s) 534, 555
MaeIII GTNAC 2 cut(s) 708, 717
MalI GATC 2 cut(s) 141, 678
MboI GATC 2 cut(s) 139, 676
MboII GAAGA 3 cut(s) 169, 535, 628
MhlI GDGCHC 3 cut(s) 203, 226, 515
MluCI AATT 4 cut(s) 66, 454, 493, 558
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 704
MnlI CCTC 6 cut(s) 224, 320, 349, 578, 599, 716
MslI CAYNNNNRTG 3 cut(s) 76, 402, 724
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 8 cut(s) 87, 120, 129, 255, 297, 393, 415, 641
NcoI CCATGG 1 cut(s) 336
NdeII GATC 2 cut(s) 139, 676
NlaIII CATG 8 cut(s) 132, 151, 321, 340, 464, 471, 503, 521
NmuCI GTSAC 2 cut(s) 708, 717
NspI RCATGY 4 cut(s) 132, 151, 464, 471
OliI CACNNNNGTG 1 cut(s) 724
PkrI GCNGC 2 cut(s) 89, 389
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 294
Psp5II RGGWCCY 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 226
PspFI CCCAGC 2 cut(s) 635, 695
PspGI CCWGG 1 cut(s) 226
PspPI GGNCC 1 cut(s) 294
PspPPI RGGWCCY 1 cut(s) 294
PstNI CAGNNNCTG 2 cut(s) 297, 393
RsaI GTAC 3 cut(s) 59, 284, 452
RsaNI GTAC 3 cut(s) 58, 283, 451
RseI CAYNNNNRTG 3 cut(s) 76, 402, 724
SatI GCNGC 2 cut(s) 88, 388
Sau3AI GATC 2 cut(s) 139, 676
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 3 cut(s) 203, 226, 515
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 3 cut(s) 76, 402, 724
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 533
Sse9I AATT 4 cut(s) 66, 454, 493, 558
SsiI CCGC 4 cut(s) 239, 300, 418, 665
SspMI CTAG 2 cut(s) 534, 555
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 336
TaqI TCGA 3 cut(s) 138, 306, 437
TasI AATT 4 cut(s) 66, 454, 493, 558
TatI WGTACW 2 cut(s) 57, 450
TscAI CASTG 2 cut(s) 158, 717
TseFI GTSAC 2 cut(s) 708, 717
TseI GCWGC 2 cut(s) 87, 387
Tsp45I GTSAC 2 cut(s) 708, 717
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 158, 717
VpaK11BI GGWCC 1 cut(s) 294
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 2 cut(s) 66, 558
XceI RCATGY 4 cut(s) 132, 151, 464, 471
XspI CTAG 2 cut(s) 534, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.