Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Forward (+)

27635470 .. 27636195

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1144800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGATTGACAAGGAAATCTCTCACCCCATCCACCTAAAACACAAGCTAAAGATCGAATACACTGAGATCCCGTTCTACTGCGACGGGTGCAAAGAAGCAGGAATTGGCCTTAAATACAAGTGCCAGCAATGTGAATTTGATTTGCACAAGGCATGCGCTGTGGCTTCTCCAACCATCACCCATCCCTTCTACAACAAATGTGAGTTTCAGTTTCTTTACAGCCCACCGGGCGCTGCAAGGAGAGTGTGTGATGCGTGTAGGAAGGATGTTCTAGGGTTTGTGTACCACTGCAGGAGGTGTGGTTTTGATCTGCACCCTTGTTGCGCAAACCTCCCACAAGTCCTGGATGACGGGCAGCGCAACTTTTACTTGTACCTCAAGTTATCGAGCGCTTGTCATCAGTGTGGAGGCAAGGGGCATGGTTGGTGTTATAGGTCAGAATGCAAGACGTATAATCTTCATGTGTCATGTGTGAAGGAGCTGCTTGTGGAGAGCTGGCAAGCCAAGTATCTCAATGTGGACAAGAACAAGGTTAGGGAAATGCAGACGAGGATCCCGAGCCTGAAGGGGACGCTGAAAAGCCACCACGGCGGAGGGAGAGGTGGGAAGGTCAGAAAGTGTTGCGAGATAGCTGGTGGCGCTGTTCGCGTCATTGTCTCTGCCATACTCGGAGATCCTACTGCCCTAATAGGCGCCGCTGTTGGCGGTTTCATATCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

242

Amino Acids

26.88

Weight (kDa)

9.02

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	11 - 54	4e-08	C1 domain
C1_2	PF03107	73 - 110	1.9e-06	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	695
AccII	CGCG	1 cut(s)	651
AciI	CCGC	3 cut(s)	594, 699, 708
AclWI	GGATC	4 cut(s)	64, 550, 563, 671
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	696
AfaI	GTAC	2 cut(s)	287, 377
AfeI	AGCGCT	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	4 cut(s)	49, 484, 498, 635
AluI	AGCT	4 cut(s)	49, 484, 498, 635
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	4 cut(s)	64, 550, 563, 671
Ama87I	CYCGRG	1 cut(s)	559
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	236, 358, 484
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	7 cut(s)	161, 236, 329, 363, 395, 644, 698
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	17, 172
AvaI	CYCGRG	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	695
BbvI	GCAGC	3 cut(s)	223, 370, 471
BccI	CCATC	3 cut(s)	38, 185, 192
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	4 cut(s)	237, 396, 645, 699
BglI	GCCNNNNNGGC	2 cut(s)	231, 591
BisI	GCNGC	4 cut(s)	237, 359, 485, 699
BlsI	GCNGC	4 cut(s)	238, 360, 486, 700
Bme1390I	CCNGG	2 cut(s)	231, 347
BmeT110I	CYCGRG	1 cut(s)	559
BmiI	GGNNCC	2 cut(s)	557, 697
BmrFI	CCNGG	2 cut(s)	231, 347
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	589
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 289, 319
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	4 cut(s)	30, 184, 274, 355
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	223, 370, 471
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	651
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	559
Bsp143I	GATC	5 cut(s)	54, 69, 310, 555, 676
BspACI	CCGC	3 cut(s)	594, 699, 708
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	651
BspLI	GGNNCC	2 cut(s)	557, 697
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	4 cut(s)	64, 550, 563, 671
BspT107I	GGYRCC	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	5 cut(s)	54, 69, 310, 555, 676
BssNI	GRCGYC	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	696
BstC8I	GCNNGC	4 cut(s)	128, 157, 500, 504
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	4 cut(s)	30, 184, 274, 355
BstFNI	CGCG	1 cut(s)	651
BstH2I	RGCGCY	4 cut(s)	237, 396, 645, 699
BstHHI	GCGC	7 cut(s)	161, 236, 329, 363, 395, 644, 698
BstKTI	GATC	5 cut(s)	57, 72, 313, 558, 679
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	5 cut(s)	54, 69, 310, 555, 676
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 231, 591, 641, 648
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	229, 345
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	223, 370, 471
BstX2I	RGATCY	3 cut(s)	69, 555, 676
BstYI	RGATCY	3 cut(s)	69, 555, 676
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	30, 184, 274, 355
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	3 cut(s)	63, 289, 410
Cac8I	GCNNGC	4 cut(s)	128, 157, 500, 504
CfoI	GCGC	7 cut(s)	161, 236, 329, 363, 395, 644, 698
CseI	GACGC	2 cut(s)	583, 640
Csp6I	GTAC	2 cut(s)	286, 376
CviAII	CATG	4 cut(s)	156, 422, 464, 471
CviQI	GTAC	2 cut(s)	286, 376
DdeI	CTNAG	1 cut(s)	66
DinI	GGCGCC	1 cut(s)	697
DpnI	GATC	5 cut(s)	56, 71, 312, 557, 678
DpnII	GATC	5 cut(s)	54, 69, 310, 555, 676
EciI	GGCGGA	1 cut(s)	609
Eco47III	AGCGCT	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	697
EheI	GGCGCC	1 cut(s)	697
FaeI	CATG	4 cut(s)	159, 425, 467, 474
FaiI	YATR	8 cut(s)	157, 423, 435, 456, 465, 472, 668, 716
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	4 cut(s)	155, 421, 463, 470
Fnu4HI	GCNGC	4 cut(s)	237, 359, 485, 699
FokI	GGATG	4 cut(s)	17, 171, 281, 362
Fsp4HI	GCNGC	4 cut(s)	237, 359, 485, 699
FspBI	CTAG	1 cut(s)	275
FspI	TGCGCA	1 cut(s)	328
GlaI	GCGC	7 cut(s)	160, 235, 328, 362, 394, 643, 697
GluI	GCNGC	4 cut(s)	237, 359, 485, 699
HaeII	RGCGCY	4 cut(s)	237, 396, 645, 699
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	2 cut(s)	583, 640
HhaI	GCGC	7 cut(s)	161, 236, 329, 363, 395, 644, 698
Hin1I	GRCGYC	1 cut(s)	696
Hin1II	CATG	4 cut(s)	159, 425, 467, 474
Hin6I	GCGC	7 cut(s)	159, 234, 327, 361, 393, 642, 696
HinP1I	GCGC	7 cut(s)	159, 234, 327, 361, 393, 642, 696
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	17, 172
Hpy166II	GTNNAC	2 cut(s)	286, 523
Hpy188I	TCNGA	3 cut(s)	442, 617, 674
Hpy188III	TCNNGA	1 cut(s)	559
Hpy8I	GTNNAC	2 cut(s)	286, 523
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	5 cut(s)	199, 259, 472, 562, 604
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	7 cut(s)	93, 148, 239, 294, 316, 447, 547
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 231, 591, 641, 648
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	452
Hsp92I	GRCGYC	1 cut(s)	696
Hsp92II	CATG	4 cut(s)	159, 425, 467, 474
HspAI	GCGC	7 cut(s)	159, 234, 327, 361, 393, 642, 696
KasI	GGCGCC	1 cut(s)	695
Kzo9I	GATC	5 cut(s)	54, 69, 310, 555, 676
LmnI	GCTCC	1 cut(s)	481
LpnPI	CCDG	9 cut(s)	87, 140, 243, 280, 332, 359, 484, 578, 621
Lsp1109I	GCAGC	3 cut(s)	223, 370, 471
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	452
MalI	GATC	5 cut(s)	56, 71, 312, 557, 678
MboI	GATC	5 cut(s)	54, 69, 310, 555, 676
MboII	GAAGA	2 cut(s)	16, 452
MflI	RGATCY	3 cut(s)	69, 555, 676
MluCI	AATT	2 cut(s)	105, 137
Mly113I	GGCGCC	1 cut(s)	696
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	7 cut(s)	291, 344, 389, 404, 546, 590, 596
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	231, 347
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	5 cut(s)	90, 231, 591, 641, 648
NarI	GGCGCC	1 cut(s)	696
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	5 cut(s)	54, 69, 310, 555, 676
NlaIII	CATG	4 cut(s)	159, 425, 467, 474
NlaIV	GGNNCC	2 cut(s)	557, 697
NsbI	TGCGCA	1 cut(s)	328
NspI	RCATGY	1 cut(s)	159
PaeI	GCATGC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PctI	GAATGC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	238, 360, 486, 700
PluTI	GGCGCC	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	557, 697
PstI	CTGCAG	1 cut(s)	296
PsuI	RGATCY	3 cut(s)	69, 555, 676
RsaI	GTAC	2 cut(s)	287, 377
RsaNI	GTAC	2 cut(s)	286, 376
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	4 cut(s)	237, 359, 485, 699
Sau3AI	GATC	5 cut(s)	54, 69, 310, 555, 676
ScrFI	CCNGG	2 cut(s)	231, 347
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	292
SfoI	GGCGCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	105, 137
SsiI	CCGC	3 cut(s)	594, 699, 708
SspDI	GGCGCC	1 cut(s)	695
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	229, 345
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	2 cut(s)	57, 389
TasI	AATT	2 cut(s)	105, 137
TauI	GCSGC	1 cut(s)	701
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	3 cut(s)	70, 296, 410
TseI	GCWGC	3 cut(s)	236, 358, 484
TspDTI	ATGAA	3 cut(s)	17, 452, 703
TspRI	CASTG	3 cut(s)	70, 296, 410
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.