Rorug06G0141900

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004809
Physical Location & Seq
Forward (+)
20143753 .. 20145306
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0141900.1

Sequence Viewer

Length: 1113 bp
ATGGCTTCTGCCAAGGGTTTGAACCCTTTTGCCGCTGAGTTCGTCAAACCTCAAAGCTCGAGTTTCTCAAAAAAAGACTATTCAACGCTCAACCCTTATGCCTCATCCTTTTACTGCTTCTCAAATGTTCTACCGGCACCCACAGGCTTCCCAAGTACCCCCATCACTTACTCTCTCCCCTTCCCCACCGATTTTCAATACCCAACTCATTTTGAGCACCATGTGCTTCCGGCAATCCAGTCGGTTCATAAGGCTGTGTCTGATCAGCCAGAGCTGGTTGAAGTGCAGCAACCAGCTCATGACCTTGTTGCGCAGGAAGCTAACCAAAAATTTGTGCCTCCAAAAGTTCCGAGGATTCGTGGCTCCAAAGGAAGGTATAGGAGGTATAGCCGATTCTTTGATCAGCAAATCGGAAGAAGAAGCAGTACTAGTACAGAGAAGCAGGAGGGTACAGAGAAGCAGGAGGGGAAGCCTGCTTTGAAGTCGACTGATGAGAAGAAGCTTCCAAAGAAATTTATTGATTACAATTGGAGTGTGCCCAGGAGGATGGTGAAGAGATCCTCCAACGTGCTGCCGGTGAGAAAAGACGGTGACGGCACCACCGTCATGATTAGAAACATACCCAATAAGTACTCTCGTGATCTGTTGATGACTTTTCTGGACAAGCACTGTGCGAATGAGAATCGGAAATCTGACGGAGGAGAAGAATCGGAATCGGCCTTTGATTTCTTGTATCTGCCTATTGATTTTTGGACTGGGATGAACAAGGGCTATGCATTTGTAAACTTTACAAAACCAAAAGCTGTGTGGAAGTTTTACTTGGCCGCTCATAGCCAGACATGGGAGTCGTTCCACTCCAACAAGATTCGAGAAATCGCCTACGCTCGAATCCAGGGGAAGAAGGACTTGGTTCAACATTTTGAGACAATGGGGTTTCCTTGTGAGTCGGAGGACGTGCTGCCGGTGTGTTTCAGTCCACCGCGGAACGGATCAGAGAAGTTGGTGGAGAGGAGATATGTTGGGAAGCTTGAAGGATGGGAAGGGATTGGATTGAGTCGACAGGCTGCAGGAACTTGGAGGAAGGTGAAGGAAGGAAGCTCAGCTAGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

370

Amino Acids

42.15

Weight (kDa)

9.49

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_2 PF04059 200 - 307 4.2e-27 RNA recognition motif 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 844
Acc16I TGCGCA 1 cut(s) 312
AccB1I GGYRCC 2 cut(s) 136, 596
AccBSI CCGCTC 1 cut(s) 827
AccI GTMKAC 2 cut(s) 485, 1057
AccII CGCG 1 cut(s) 982
AciI CCGC 4 cut(s) 33, 825, 980, 982
AclWI GGATC 2 cut(s) 552, 997
AcoI YGGCCR 1 cut(s) 822
AcsI RAATTY 2 cut(s) 329, 512
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 5 cut(s) 157, 427, 433, 451, 632
AfiI CCNNNNNNNGG 3 cut(s) 372, 841, 986
AgsI TTSAA 7 cut(s) 22, 84, 197, 281, 481, 914, 1031
AhlI ACTAGT 1 cut(s) 428
AjiI CACGTC 1 cut(s) 955
AjnI CCWGG 2 cut(s) 539, 891
AjuI GAANNNNNNNTTGG 4 cut(s) 803, 835, 890, 922
AluBI AGCT 9 cut(s) 57, 274, 296, 320, 502, 803, 1027, 1098, 1103
AluI AGCT 9 cut(s) 57, 274, 296, 320, 502, 803, 1027, 1098, 1103
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 917
AlwI GGATC 2 cut(s) 552, 997
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 2 cut(s) 717, 822
ApeKI GCWGC 4 cut(s) 286, 571, 958, 1064
ApoI RAATTY 2 cut(s) 329, 512
AspLEI GCGC 1 cut(s) 313
AsuHPI GGTGA 4 cut(s) 562, 589, 602, 1096
AvaI CYCGRG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 540
BanI GGYRCC 2 cut(s) 136, 596
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BauI CACGAG 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 4 cut(s) 298, 558, 945, 1051
BccI CCATC 3 cut(s) 170, 541, 1029
BceAI ACGGC 1 cut(s) 610
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 541, 893
BclI TGATCA 2 cut(s) 262, 400
BcoDI GTCTC 1 cut(s) 917
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 2 cut(s) 429, 1104
BfmI CTRYAG 1 cut(s) 1065
BisI GCNGC 6 cut(s) 33, 287, 572, 825, 959, 1065
BlpI GCTNAGC 1 cut(s) 1099
BlsI GCNGC 6 cut(s) 34, 288, 573, 826, 960, 1066
BmcAI AGTACT 2 cut(s) 427, 632
Bme1390I CCNGG 2 cut(s) 541, 893
BmeT110I CYCGRG 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 955
BmiI GGNNCC 3 cut(s) 138, 364, 598
BmrFI CCNGG 2 cut(s) 541, 893
BmrI ACTGGG 1 cut(s) 765
BmuI ACTGGG 1 cut(s) 765
Bpu1102I GCTNAGC 1 cut(s) 1099
BsaJI CCNNGG 5 cut(s) 12, 350, 539, 892, 980
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 841, 986
Bse118I RCCGGY 3 cut(s) 133, 574, 961
Bse1I ACTGG 2 cut(s) 238, 760
BseBI CCWGG 2 cut(s) 541, 893
BseDI CCNNGG 5 cut(s) 12, 350, 539, 892, 980
BseGI GGATG 4 cut(s) 104, 552, 765, 1040
BseLI CCNNNNNNNGG 3 cut(s) 372, 841, 986
BseMII CTCAG 2 cut(s) 27, 1113
BseNI ACTGG 2 cut(s) 238, 760
BseRI GAGGAG 2 cut(s) 714, 1024
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 4 cut(s) 298, 558, 945, 1051
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 982
BshFI GGCC 2 cut(s) 719, 824
BshNI GGYRCC 2 cut(s) 136, 596
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 4 cut(s) 134, 230, 575, 962
BslI CCNNNNNNNGG 3 cut(s) 372, 841, 986
BsmAI GTCTC 1 cut(s) 917
BsnI GGCC 2 cut(s) 719, 824
BsoBI CYCGRG 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 219, 540
Bsp143I GATC 5 cut(s) 262, 400, 557, 640, 989
Bsp1720I GCTNAGC 1 cut(s) 1099
BspACI CCGC 4 cut(s) 33, 825, 980, 982
BspANI GGCC 2 cut(s) 719, 824
BspCNI CTCAG 2 cut(s) 28, 1112
BspFNI CGCG 1 cut(s) 982
BspHI TCATGA 3 cut(s) 298, 606, 1109
BspLI GGNNCC 3 cut(s) 138, 364, 598
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 2 cut(s) 552, 997
BspT107I GGYRCC 2 cut(s) 136, 596
BsrBI CCGCTC 1 cut(s) 827
BsrFI RCCGGY 3 cut(s) 133, 574, 961
BsrI ACTGG 2 cut(s) 238, 760
BssAI RCCGGY 3 cut(s) 133, 574, 961
BssECI CCNNGG 5 cut(s) 12, 350, 539, 892, 980
BssMI GATC 5 cut(s) 262, 400, 557, 640, 989
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 541, 893
Bst4CI ACNGT 3 cut(s) 590, 604, 671
Bst6I CTCTTC 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 2 cut(s) 36, 1099
BstDSI CCRYGG 1 cut(s) 980
BstF5I GGATG 4 cut(s) 104, 552, 765, 1040
BstFNI CGCG 1 cut(s) 982
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 5 cut(s) 265, 403, 560, 643, 992
BstMAI GTCTC 1 cut(s) 917
BstMBI GATC 5 cut(s) 262, 400, 557, 640, 989
BstMWI GCNNNNNNNGC 2 cut(s) 223, 317
BstNI CCWGG 2 cut(s) 541, 893
BstSCI CCNGG 2 cut(s) 539, 891
BstSFI CTRYAG 1 cut(s) 1065
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 1 cut(s) 982
BstV1I GCAGC 4 cut(s) 298, 558, 945, 1051
BstX2I RGATCY 1 cut(s) 557
BstXI CCANNNNNNTGG 1 cut(s) 547
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 2 cut(s) 719, 824
BtgI CCRYGG 1 cut(s) 980
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 4 cut(s) 104, 552, 765, 1040
BtsIMutI CAGTG 1 cut(s) 667
Cac8I GCNNGC 1 cut(s) 474
CciI TCATGA 3 cut(s) 298, 606, 1109
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 3 cut(s) 133, 574, 961
Cfr42I CCGCGG 1 cut(s) 983
Csp6I GTAC 5 cut(s) 156, 426, 432, 450, 631
CviAII CATG 5 cut(s) 221, 299, 607, 840, 1110
CviQI GTAC 5 cut(s) 156, 426, 432, 450, 631
DdeI CTNAG 2 cut(s) 36, 1099
DpnI GATC 5 cut(s) 264, 402, 559, 642, 991
DpnII GATC 5 cut(s) 262, 400, 557, 640, 989
DraIII CACNNNGTG 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 844
DseDI GACNNNNNNGTC 1 cut(s) 844
EaeI YGGCCR 1 cut(s) 822
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 539, 891
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 5 cut(s) 224, 302, 610, 843, 1113
FalI AAGNNNNNCTT 4 cut(s) 803, 835, 890, 922
FatI CATG 5 cut(s) 220, 298, 606, 839, 1109
FbaI TGATCA 2 cut(s) 262, 400
FblI GTMKAC 2 cut(s) 485, 1057
Fnu4HI GCNGC 6 cut(s) 33, 287, 572, 825, 959, 1065
FokI GGATG 4 cut(s) 91, 559, 772, 1047
Fsp4HI GCNGC 6 cut(s) 33, 287, 572, 825, 959, 1065
FspBI CTAG 2 cut(s) 429, 1104
FspI TGCGCA 1 cut(s) 312
GlaI GCGC 1 cut(s) 312
GluI GCNGC 6 cut(s) 33, 287, 572, 825, 959, 1065
HaeIII GGCC 2 cut(s) 719, 824
HapII CCGG 4 cut(s) 134, 230, 575, 962
HhaI GCGC 1 cut(s) 313
Hin1II CATG 5 cut(s) 224, 302, 610, 843, 1113
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 2 cut(s) 486, 1058
HindII GTYRAC 2 cut(s) 486, 1058
HindIII AAGCTT 2 cut(s) 500, 1025
HpaII CCGG 4 cut(s) 134, 230, 575, 962
HphI GGTGA 4 cut(s) 562, 589, 602, 1096
Hpy166II GTNNAC 4 cut(s) 486, 784, 977, 1058
Hpy188I TCNGA 8 cut(s) 262, 351, 413, 687, 694, 712, 949, 994
Hpy188III TCNNGA 6 cut(s) 299, 607, 638, 659, 869, 1110
Hpy8I GTNNAC 4 cut(s) 486, 784, 977, 1058
HpyAV CCTTC 8 cut(s) 190, 366, 895, 1025, 1034, 1075, 1081, 1085
HpyCH4III ACNGT 3 cut(s) 590, 604, 671
HpyCH4IV ACGT 2 cut(s) 567, 954
HpyCH4V TGCA 3 cut(s) 286, 776, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 317
HpyF3I CTNAG 2 cut(s) 36, 1099
HpySE526I ACGT 2 cut(s) 567, 954
Hsp92II CATG 5 cut(s) 224, 302, 610, 843, 1113
HspAI GCGC 1 cut(s) 311
Ksp22I TGATCA 2 cut(s) 262, 400
KspI CCGCGG 1 cut(s) 983
Kzo9I GATC 5 cut(s) 262, 400, 557, 640, 989
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 4 cut(s) 298, 558, 945, 1051
MaeI CTAG 2 cut(s) 429, 1104
MaeII ACGT 2 cut(s) 567, 954
MaeIII GTNAC 1 cut(s) 590
MalI GATC 5 cut(s) 264, 402, 559, 642, 991
MbiI CCGCTC 1 cut(s) 827
MboI GATC 5 cut(s) 262, 400, 557, 640, 989
MboII GAAGA 6 cut(s) 426, 429, 508, 565, 716, 910
MfeI CAATTG 1 cut(s) 526
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 2 cut(s) 219, 540
MluCI AATT 3 cut(s) 329, 512, 526
MlyI GAGTC 3 cut(s) 854, 953, 1063
MmeI TCCRAC 3 cut(s) 588, 882, 927
Mph1103I ATGCAT 1 cut(s) 778
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 35, 982
MspI CCGG 4 cut(s) 134, 230, 575, 962
MspR9I CCNGG 2 cut(s) 541, 893
MunI CAATTG 1 cut(s) 526
MvaI CCWGG 2 cut(s) 541, 893
MvnI CGCG 1 cut(s) 982
MwoI GCNNNNNNNGC 2 cut(s) 223, 317
NdeII GATC 5 cut(s) 262, 400, 557, 640, 989
NlaIII CATG 5 cut(s) 224, 302, 610, 843, 1113
NlaIV GGNNCC 3 cut(s) 138, 364, 598
NmuCI GTSAC 1 cut(s) 590
NsbI TGCGCA 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 778
PaeR7I CTCGAG 1 cut(s) 58
PagI TCATGA 3 cut(s) 298, 606, 1109
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PfeI GAWTC 7 cut(s) 355, 393, 682, 707, 713, 865, 888
PkrI GCNGC 6 cut(s) 34, 288, 573, 826, 960, 1066
PleI GAGTC 3 cut(s) 853, 952, 1062
PpsI GAGTC 3 cut(s) 853, 952, 1062
Psp6I CCWGG 2 cut(s) 539, 891
PspGI CCWGG 2 cut(s) 539, 891
PspN4I GGNNCC 3 cut(s) 138, 364, 598
PspXI VCTCGAGB 1 cut(s) 58
PstI CTGCAG 1 cut(s) 1069
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 5 cut(s) 157, 427, 433, 451, 632
RsaNI GTAC 5 cut(s) 156, 426, 432, 450, 631
RseI CAYNNNNRTG 1 cut(s) 605
SacII CCGCGG 1 cut(s) 983
SalI GTCGAC 2 cut(s) 484, 1056
SatI GCNGC 6 cut(s) 33, 287, 572, 825, 959, 1065
Sau3AI GATC 5 cut(s) 262, 400, 557, 640, 989
ScaI AGTACT 2 cut(s) 427, 632
SchI GAGTC 3 cut(s) 854, 953, 1063
ScrFI CCNGG 2 cut(s) 541, 893
SduI GDGCHC 2 cut(s) 219, 540
SfcI CTRYAG 1 cut(s) 1065
Sfr274I CTCGAG 1 cut(s) 58
Sfr303I CCGCGG 1 cut(s) 983
SgrBI CCGCGG 1 cut(s) 983
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 3 cut(s) 329, 512, 526
SsiI CCGC 4 cut(s) 33, 825, 980, 982
SspMI CTAG 2 cut(s) 429, 1104
StyD4I CCNGG 2 cut(s) 539, 891
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 590, 604, 671
TaiI ACGT 2 cut(s) 570, 957
TaqI TCGA 5 cut(s) 59, 485, 868, 886, 1057
TasI AATT 3 cut(s) 329, 512, 526
TatI WGTACW 3 cut(s) 425, 431, 630
TauI GCSGC 2 cut(s) 35, 827
TfiI GAWTC 7 cut(s) 355, 393, 682, 707, 713, 865, 888
TscAI CASTG 1 cut(s) 674
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 4 cut(s) 286, 571, 958, 1064
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 2 cut(s) 236, 776
TspGWI ACGGA 2 cut(s) 711, 1002
TspRI CASTG 1 cut(s) 674
XapI RAATTY 2 cut(s) 329, 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 804
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 2 cut(s) 485, 1057
XspI CTAG 2 cut(s) 429, 1104
ZrmI AGTACT 2 cut(s) 427, 632
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.