Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Forward (+)

23121417 .. 23122142

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1144600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGATTGACAAGGAAATCTCTCATCCCATCCACCTAAAACACAGGCTCAAGATCGAATACACCGAGGTCCCGTTCTACTGCGACGGGTGCAAAGAAGCCGGAATTGGCCTCAAATACAAGTGCCAGCAATGTGAGTTTGATTTGCACAAGGCATGTGCTGTGGCTCCTCCAACCATCACCCACCCCTTCTACGACAAATGTGAGTTTCAGTTTCTTTACCGCCCGCCAGGCGCTGTGAGGAGAGTGTGTGATGCGTGTAGGAAGGATGTTGTAGGGTTTGTGTACCACTGCAGGAAGTGCGGTTTTGATCTGCACCCCTGTTGTGCCAACCTCCCACAAGTCCTGGATGACGGAGAGCGCAACTTTTACTTGTACCTCAAGTTATCGAGCGCTTGTCATCGGTGTGGAGGCAAGGGGCGTGGTTGGTGTTATAGGTCGGAATGCAAGACGTATAATCTTCATGTATCATGTGTGAAGGAGTTGCTTGTGGAGAGCTGGCAAGCCATGTATCTGAATGTCGACAAGAACAAGGTTAGGGAAATGCAAACTAGGATCCCGAGCCTTAAGGGGACGCTGAAAAACCACCATGGCGGAGGGAGAGGCGAGAAGGTCAGAAAGTGTTGCGAGATAGCTGGTGGCGCTGTTCGCATCATTGTCTCTGCCATACTAGGAGATCCTACCGCTCTGATAGGGGCCGCTGTTGGCGGTTTCATATCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

242

Amino Acids

27.12

Weight (kDa)

8.97

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	11 - 54	1.4e-08	C1 domain
C1_2	PF03107	75 - 110	1.5e-06	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	7 cut(s)	223, 227, 303, 594, 684, 699, 708
AclWI	GGATC	3 cut(s)	550, 563, 671
AfaI	GTAC	2 cut(s)	287, 377
AfeI	AGCGCT	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	566
AjnI	CCWGG	2 cut(s)	229, 345
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	498, 635
AluI	AGCT	2 cut(s)	498, 635
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	3 cut(s)	550, 563, 671
AlwNI	CAGNNNCTG	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	559
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	2 cut(s)	109, 696
AspLEI	GCGC	4 cut(s)	236, 363, 395, 644
AspS9I	GGNCC	2 cut(s)	70, 696
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	555
BccI	CCATC	2 cut(s)	38, 185
BciT130I	CCWGG	2 cut(s)	231, 347
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	2 cut(s)	552, 671
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	3 cut(s)	237, 396, 645
BfrI	CTTAAG	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	700
Bme1390I	CCNGG	2 cut(s)	231, 347
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	2 cut(s)	70, 696
BmiI	GGNNCC	4 cut(s)	72, 168, 557, 697
BmrFI	CCNGG	2 cut(s)	231, 347
BmsI	GCATC	2 cut(s)	244, 660
BpuEI	CTTGAG	2 cut(s)	35, 365
BsaJI	CCNNGG	2 cut(s)	66, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	2 cut(s)	231, 347
BseDI	CCNNGG	2 cut(s)	66, 589
BseGI	GGATG	4 cut(s)	25, 30, 274, 355
BseMI	GCAATG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	159, 256
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	111, 698
BsiHKCI	CYCGRG	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	56, 586
BsmAI	GTCTC	1 cut(s)	664
BsmFI	GGGAC	2 cut(s)	56, 586
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	111, 698
BsoBI	CYCGRG	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	54, 310, 555, 676
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	7 cut(s)	223, 227, 303, 594, 684, 699, 708
BspANI	GGCC	2 cut(s)	111, 698
BspLI	GGNNCC	4 cut(s)	72, 168, 557, 697
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	3 cut(s)	550, 563, 671
BspTI	CTTAAG	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	66, 589
BssMI	GATC	4 cut(s)	54, 310, 555, 676
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	2 cut(s)	231, 347
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstC8I	GCNNGC	4 cut(s)	128, 227, 500, 504
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	4 cut(s)	25, 30, 274, 355
BstH2I	RGCGCY	3 cut(s)	237, 396, 645
BstHHI	GCGC	4 cut(s)	236, 363, 395, 644
BstKTI	GATC	4 cut(s)	57, 313, 558, 679
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	4 cut(s)	54, 310, 555, 676
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 231, 300, 641, 648
BstNI	CCWGG	2 cut(s)	231, 347
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	229, 345
BstSFI	CTRYAG	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	555, 676
BstYI	RGATCY	2 cut(s)	555, 676
BsuRI	GGCC	2 cut(s)	111, 698
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	25, 30, 274, 355
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	128, 227, 500, 504
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	4 cut(s)	236, 363, 395, 644
Cfr13I	GGNCC	2 cut(s)	70, 696
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	2 cut(s)	286, 376
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	5 cut(s)	156, 464, 471, 508, 590
CviJI	RGCY	9 cut(s)	49, 101, 111, 167, 498, 506, 564, 635, 698
CviKI_1	RGCY	9 cut(s)	49, 101, 111, 167, 498, 506, 564, 635, 698
CviQI	GTAC	2 cut(s)	286, 376
DpnI	GATC	4 cut(s)	56, 312, 557, 678
DpnII	GATC	4 cut(s)	54, 310, 555, 676
EciI	GGCGGA	1 cut(s)	609
Eco130I	CCWWGG	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	70
Eco47III	AGCGCT	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	229, 345
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	5 cut(s)	159, 467, 474, 511, 593
FaiI	YATR	9 cut(s)	157, 435, 456, 465, 472, 509, 591, 668, 716
FaqI	GGGAC	2 cut(s)	56, 586
FatI	CATG	5 cut(s)	155, 463, 470, 507, 589
FauI	CCCGC	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	4 cut(s)	12, 17, 281, 362
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	2 cut(s)	552, 671
GlaI	GCGC	4 cut(s)	235, 362, 394, 643
GluI	GCNGC	1 cut(s)	699
HaeII	RGCGCY	3 cut(s)	237, 396, 645
HaeIII	GGCC	2 cut(s)	111, 698
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	583
HhaI	GCGC	4 cut(s)	236, 363, 395, 644
Hin1II	CATG	5 cut(s)	159, 467, 474, 511, 593
Hin6I	GCGC	4 cut(s)	234, 361, 393, 642
HinP1I	GCGC	4 cut(s)	234, 361, 393, 642
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	286, 523
Hpy188I	TCNGA	4 cut(s)	442, 516, 617, 690
Hpy188III	TCNNGA	2 cut(s)	52, 559
Hpy8I	GTNNAC	2 cut(s)	286, 523
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	199, 259, 472, 604
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	6 cut(s)	93, 148, 294, 316, 447, 547
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 231, 300, 641, 648
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	5 cut(s)	159, 467, 474, 511, 593
HspAI	GCGC	4 cut(s)	234, 361, 393, 642
Kzo9I	GATC	4 cut(s)	54, 310, 555, 676
LmnI	GCTCC	1 cut(s)	172
LweI	GCATC	2 cut(s)	244, 660
MaeI	CTAG	2 cut(s)	552, 671
MaeII	ACGT	1 cut(s)	452
MalI	GATC	4 cut(s)	56, 312, 557, 678
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	4 cut(s)	54, 310, 555, 676
MboII	GAAGA	2 cut(s)	16, 452
MflI	RGATCY	2 cut(s)	555, 676
MluCI	AATT	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	197, 420
MnlI	CCTC	9 cut(s)	61, 122, 180, 234, 344, 389, 404, 590, 596
MseI	TTAA	1 cut(s)	567
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	701
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	231, 347
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	2 cut(s)	231, 347
MwoI	GCNNNNNNNGC	5 cut(s)	90, 231, 300, 641, 648
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	4 cut(s)	54, 310, 555, 676
NlaIII	CATG	5 cut(s)	159, 467, 474, 511, 593
NlaIV	GGNNCC	4 cut(s)	72, 168, 557, 697
NspI	RCATGY	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	229, 345
PspGI	CCWGG	2 cut(s)	229, 345
PspN4I	GGNNCC	4 cut(s)	72, 168, 557, 697
PspPI	GGNCC	2 cut(s)	70, 696
PspPPI	RGGWCCY	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	2 cut(s)	555, 676
RsaI	GTAC	2 cut(s)	287, 377
RsaNI	GTAC	2 cut(s)	286, 376
RseI	CAYNNNNRTG	1 cut(s)	405
SalI	GTCGAC	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	1 cut(s)	699
Sau3AI	GATC	4 cut(s)	54, 310, 555, 676
Sau96I	GGNCC	2 cut(s)	70, 696
ScrFI	CCNGG	2 cut(s)	231, 347
SfaNI	GCATC	2 cut(s)	244, 660
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	3 cut(s)	50, 380, 566
SmoI	CTYRAG	3 cut(s)	50, 380, 566
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	7 cut(s)	223, 227, 303, 594, 684, 699, 708
SspMI	CTAG	2 cut(s)	552, 671
StyD4I	CCNGG	2 cut(s)	229, 345
StyI	CCWWGG	1 cut(s)	589
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	3 cut(s)	57, 389, 522
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	701
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	17, 452, 703
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	70
XceI	RCATGY	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	552, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.