Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Forward (+)

18234518 .. 18235902

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G182900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAGATTGACAAGGAAATCTCTCACCCCATCCACCTACAACACAAGCTCAAGATTGAATACACAGAGATCCCATTCTACTGTGATGGGTGCAAAGAACCTGGCATTGGCCTTAAATACAAGTGTCAGAAATGTGAGTTTGACTTGCATAAGGCATGTGCTGTGGCTGCTCCCAACATCCACCATCCCTTCTACAACAAATGTGAGTTTCATTTTCTTCACAACCCGCCTGGCGCTGCTAGGAGAGTGTGTGATGCATGTAGGAAGGATGTTTTGGGGTTTGTGTACCACTGCTGGAAATGTGATTTTGATCTGCACCCTTGTTGTGCAAACCTCCCACAAGTCCTAGACGATGGGGAGCACAACCTTTACTTGTGCCTCAAGTTATCTAGTCCTTGTCATAGGTGTGGAGGCAAGGGGCCTGGTTGGTCTTACAGGTCTGATTGCAAGACCTATAACCTTCATGTGTCATGTGTGAAGGAGTTGCTTGTGGAGAGCTGGCAAGCCATGTATCTCAATGTGGACAAGAACAAAGTTAGGGAAATGCAGACTAGAATCCCAAGCCTTAAGGGAACGCTGAAAAACCATCATGGAGGGAGAGGAGGAGGAGGAAAGGTCAGAAAGTGTTGCCAGATTGCTGGTGGTGCCGTTCGTGTTATTGTCTCTGCCATCCTGGGAGATCCTACTGCTCTTATAGGCGCGGTTGTCGGCGGTTTCATATCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

243

Amino Acids

26.99

Weight (kDa)

8.85

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	644
AccII	CGCG	1 cut(s)	701
AciI	CCGC	3 cut(s)	227, 701, 711
AclWI	GGATC	2 cut(s)	64, 674
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	4 cut(s)	100, 229, 421, 672
AjuI	GAANNNNNNNTTGG	4 cut(s)	90, 122, 257, 289
AluBI	AGCT	2 cut(s)	49, 498
AluI	AGCT	2 cut(s)	49, 498
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	667
AlwI	GGATC	2 cut(s)	64, 674
AoxI	GGCC	2 cut(s)	109, 419
ApeKI	GCWGC	2 cut(s)	167, 236
AspLEI	GCGC	2 cut(s)	236, 701
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	154, 223
BccI	CCATC	6 cut(s)	38, 80, 192, 347, 594, 677
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	4 cut(s)	102, 231, 423, 674
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	4 cut(s)	240, 347, 390, 552
BfoI	RGCGCY	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	566
BisI	GCNGC	2 cut(s)	168, 237
BlsI	GCNGC	2 cut(s)	169, 238
Bme1390I	CCNGG	4 cut(s)	102, 231, 423, 674
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	420, 646
BmrFI	CCNGG	4 cut(s)	102, 231, 423, 674
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	35, 365
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	673
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 265, 600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	4 cut(s)	102, 231, 423, 674
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	5 cut(s)	30, 177, 184, 274, 669
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseRI	GAGGAG	3 cut(s)	615, 618, 621
BseXI	GCAGC	2 cut(s)	154, 223
BsgI	GTGCAG	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	111, 421
BshNI	GGYRCC	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	667
BsnI	GGCC	2 cut(s)	111, 421
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	69, 310, 679
BspACI	CCGC	3 cut(s)	227, 701, 711
BspANI	GGCC	2 cut(s)	111, 421
BspFNI	CGCG	1 cut(s)	701
BspLI	GGNNCC	2 cut(s)	420, 646
BspPI	GGATC	2 cut(s)	64, 674
BspT107I	GGYRCC	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	3 cut(s)	69, 310, 679
Bst2UI	CCWGG	4 cut(s)	102, 231, 423, 674
Bst4CI	ACNGT	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	500, 504
BstF5I	GGATG	5 cut(s)	30, 177, 184, 274, 669
BstFNI	CGCG	1 cut(s)	701
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	2 cut(s)	236, 701
BstKTI	GATC	3 cut(s)	72, 313, 682
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	3 cut(s)	69, 310, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 644
BstNI	CCWGG	4 cut(s)	102, 231, 423, 674
BstNSI	RCATGY	2 cut(s)	159, 261
BstSCI	CCNGG	4 cut(s)	100, 229, 421, 672
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	154, 223
BstX2I	RGATCY	2 cut(s)	69, 679
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	2 cut(s)	69, 679
BsuRI	GGCC	2 cut(s)	111, 421
BtsCI	GGATG	5 cut(s)	30, 177, 184, 274, 669
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	500, 504
CfoI	GCGC	2 cut(s)	236, 701
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	156, 258, 464, 471, 508, 590
CviJI	RGCY	7 cut(s)	49, 111, 167, 421, 498, 506, 564
CviKI_1	RGCY	7 cut(s)	49, 111, 167, 421, 498, 506, 564
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	3 cut(s)	71, 312, 681
DpnII	GATC	3 cut(s)	69, 310, 679
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	4 cut(s)	100, 229, 421, 672
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	6 cut(s)	159, 261, 467, 474, 511, 593
FatI	CATG	6 cut(s)	155, 257, 463, 470, 507, 589
FauI	CCCGC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	168, 237
FokI	GGATG	5 cut(s)	17, 164, 171, 281, 656
Fsp4HI	GCNGC	2 cut(s)	168, 237
FspBI	CTAG	4 cut(s)	240, 347, 390, 552
GlaI	GCGC	2 cut(s)	235, 700
GluI	GCNGC	2 cut(s)	168, 237
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	111, 421
HhaI	GCGC	2 cut(s)	236, 701
Hin1II	CATG	6 cut(s)	159, 261, 467, 474, 511, 593
Hin6I	GCGC	2 cut(s)	234, 699
HinP1I	GCGC	2 cut(s)	234, 699
HinfI	GANTC	1 cut(s)	555
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	286, 523
Hpy188I	TCNGA	3 cut(s)	129, 442, 620
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	286, 523
HpyAV	CCTTC	4 cut(s)	199, 259, 470, 472
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	7 cut(s)	93, 148, 257, 316, 329, 447, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 644
Hsp92II	CATG	6 cut(s)	159, 261, 467, 474, 511, 593
HspAI	GCGC	2 cut(s)	234, 699
Kzo9I	GATC	3 cut(s)	69, 310, 679
LmnI	GCTCC	2 cut(s)	175, 358
Lsp1109I	GCAGC	2 cut(s)	154, 223
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	4 cut(s)	240, 347, 390, 552
MalI	GATC	3 cut(s)	71, 312, 681
MboI	GATC	3 cut(s)	69, 310, 679
MboII	GAAGA	2 cut(s)	16, 209
MflI	RGATCY	2 cut(s)	69, 679
MhlI	GDGCHC	1 cut(s)	363
MnlI	CCTC	8 cut(s)	344, 389, 404, 587, 593, 596, 599, 602
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	2 cut(s)	114, 567
MslI	CAYNNNNRTG	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	566
MspR9I	CCNGG	4 cut(s)	102, 231, 423, 674
MvaI	CCWGG	4 cut(s)	102, 231, 423, 674
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	2 cut(s)	167, 644
NdeII	GATC	3 cut(s)	69, 310, 679
NlaIII	CATG	6 cut(s)	159, 261, 467, 474, 511, 593
NlaIV	GGNNCC	2 cut(s)	420, 646
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	2 cut(s)	159, 261
PfeI	GAWTC	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	169, 238
Psp6I	CCWGG	4 cut(s)	100, 229, 421, 672
PspGI	CCWGG	4 cut(s)	100, 229, 421, 672
PspN4I	GGNNCC	2 cut(s)	420, 646
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	69, 679
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	114, 567
SatI	GCNGC	2 cut(s)	168, 237
Sau3AI	GATC	3 cut(s)	69, 310, 679
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	4 cut(s)	102, 231, 423, 674
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	3 cut(s)	50, 380, 566
SmoI	CTYRAG	3 cut(s)	50, 380, 566
SsiI	CCGC	3 cut(s)	227, 701, 711
SspMI	CTAG	4 cut(s)	240, 347, 390, 552
StyD4I	CCNGG	4 cut(s)	100, 229, 421, 672
TaaI	ACNGT	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	2 cut(s)	114, 567
Tru9I	TTAA	2 cut(s)	114, 567
TscAI	CASTG	1 cut(s)	296
TseI	GCWGC	2 cut(s)	167, 236
TspDTI	ATGAA	4 cut(s)	17, 200, 452, 706
TspRI	CASTG	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	566
XceI	RCATGY	2 cut(s)	159, 261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XspI	CTAG	4 cut(s)	240, 347, 390, 552
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.