Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Reverse (-)

12468294 .. 12469025

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1084700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAATACAATGAGATATCCCACTTCAGCCATCCTCAACACAAGCTCAAGTTTGAGTACACAGAAATCCCATTCAACTGTGATGGTTGCAAGGAGGTCGGCATCGGCTCGTGCTACAAGTGCTCGACGTGTGACTTCGACCTCCATATGCACTGTGCCATACCTACCCCTTCCATCTTCCACCCTTTCTACACCAAGTGCTCATTCCAGTTCCTCTCAAGGCCGCCCGGTGATAGCCCTCGCTTTTGCAATGCGTGTGAGAAGGATATAACCGGGTTCGTGTACCATTGCAAGTCCTGCGGGTTCGACCTTCACCCGTGTTGCGCAAAGCTCCCCATGGTGCTCGACGATGGGGAGGTCAAGCTCTATCTGTATCGAAAAGTGAGTAGCTCTTGCCATAGGTGCGGGCGTAAAGGACGGAGTTGGAGTTACAGATCAAAATGTAAGGAGTATAATTTGCATGTGGCATGTGTGAAGGAAATGCTTGTGGAAACTTGGCATGAGTTTTTGGGGTCGCATGGTAATAAAAGCAACAGCAGTAGAAAATTGGAGATGACCAGAATTCCTAGCCTGAAGAATACACTTCAGAATCATCACCGTCGGAGCAAAGGTAAGGTGAAGAAGTGTTGTGAGATGGCAGGATTGGCTGTGCAATTTGTGATATCAGCAGTTTTAGGCGATCCAACGACTCTGATTGCTGGGGTTATTGGGAATTTCATGTCACGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

244

Amino Acids

27.61

Weight (kDa)

8.98

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	9 - 53	4.4e-10	C1 domain
C1_2	PF03107	72 - 109	6.8e-08	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	325
AciI	CCGC	3 cut(s)	224, 300, 405
AclWI	GGATC	1 cut(s)	674
AcsI	RAATTY	2 cut(s)	561, 712
AcuI	CTGAAG	3 cut(s)	10, 569, 593
AdeI	CACNNNGTG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	59, 284
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	129
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	4 cut(s)	46, 331, 364, 390
AluI	AGCT	4 cut(s)	46, 331, 364, 390
Alw21I	GWGCWC	3 cut(s)	125, 203, 345
AlwI	GGATC	1 cut(s)	674
AoxI	GGCC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	561, 712
AspLEI	GCGC	1 cut(s)	326
AsuC2I	CCSGG	2 cut(s)	228, 274
AsuHPI	GGTGA	4 cut(s)	242, 305, 587, 628
BauI	CACGAG	2 cut(s)	109, 723
Bbv12I	GWGCWC	3 cut(s)	125, 203, 345
BccI	CCATC	5 cut(s)	39, 77, 182, 344, 628
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcnI	CCSGG	2 cut(s)	228, 274
BfaI	CTAG	1 cut(s)	567
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme1390I	CCNGG	2 cut(s)	228, 274
BmgBI	CACGTC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	228, 274
BmsI	GCATC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	32, 202
BpuMI	CCSGG	2 cut(s)	228, 274
BsaJI	CCNNGG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	4 cut(s)	412, 442, 595, 625
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	2 cut(s)	256, 286
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	256, 286
BseNI	ACTGG	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	698
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	3 cut(s)	125, 203, 345
BsiSI	CCGG	2 cut(s)	228, 273
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	125, 203, 345
Bsp143I	GATC	2 cut(s)	434, 679
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	3 cut(s)	224, 300, 405
BspANI	GGCC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	674
BsrDI	GCAATG	2 cut(s)	256, 286
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	434, 679
BssSI	CACGAG	2 cut(s)	109, 723
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	2 cut(s)	109, 723
Bst4CI	ACNGT	3 cut(s)	80, 155, 599
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	407
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	2 cut(s)	437, 682
BstMBI	GATC	2 cut(s)	434, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 297, 402, 644
BstNSI	RCATGY	2 cut(s)	464, 471
BstSCI	CCNGG	2 cut(s)	226, 272
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	58, 283
CviAII	CATG	6 cut(s)	337, 461, 468, 500, 518, 718
CviQI	GTAC	2 cut(s)	58, 283
DpnI	GATC	2 cut(s)	436, 681
DpnII	GATC	2 cut(s)	434, 679
DraIII	CACNNNGTG	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	336
Eco32I	GATATC	2 cut(s)	18, 663
Eco57I	CTGAAG	3 cut(s)	10, 569, 593
EcoRI	GAATTC	1 cut(s)	561
EcoRV	GATATC	2 cut(s)	18, 663
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	6 cut(s)	340, 464, 471, 503, 521, 721
FatI	CATG	6 cut(s)	336, 460, 467, 499, 517, 717
FauI	CCCGC	2 cut(s)	293, 398
FauNDI	CATATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	567
FspI	TGCGCA	1 cut(s)	325
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	224
GsaI	CCCAGC	1 cut(s)	702
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	2 cut(s)	228, 273
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	6 cut(s)	340, 464, 471, 503, 521, 721
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	2 cut(s)	589, 688
HpaII	CCGG	2 cut(s)	228, 273
HphI	GGTGA	4 cut(s)	242, 305, 587, 628
Hpy166II	GTNNAC	2 cut(s)	60, 283
Hpy188I	TCNGA	3 cut(s)	588, 603, 693
Hpy188III	TCNNGA	1 cut(s)	723
Hpy8I	GTNNAC	2 cut(s)	60, 283
Hpy99I	CGWCG	3 cut(s)	130, 350, 603
HpyAV	CCTTC	4 cut(s)	180, 256, 320, 469
HpyCH4III	ACNGT	3 cut(s)	80, 155, 599
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	6 cut(s)	90, 151, 249, 291, 460, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 297, 402, 644
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	340, 464, 471, 503, 521, 721
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	434, 679
LmnI	GCTCC	2 cut(s)	336, 603
LpnPI	CCDG	8 cut(s)	221, 241, 286, 310, 571, 584, 624, 684
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	567
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	131, 428, 720
MalI	GATC	2 cut(s)	436, 681
MboI	GATC	2 cut(s)	434, 679
MboII	GAAGA	3 cut(s)	169, 586, 631
MhlI	GDGCHC	3 cut(s)	125, 203, 345
MluCI	AATT	5 cut(s)	454, 545, 561, 653, 712
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	3 cut(s)	404, 581, 707
MnlI	CCTC	6 cut(s)	45, 88, 152, 224, 249, 349
MspI	CCGG	2 cut(s)	228, 273
MspR9I	CCNGG	2 cut(s)	228, 274
MwoI	GCNNNNNNNGC	4 cut(s)	120, 297, 402, 644
NciI	CCSGG	2 cut(s)	228, 274
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	2 cut(s)	434, 679
NlaIII	CATG	6 cut(s)	340, 464, 471, 503, 521, 721
NmuCI	GTSAC	2 cut(s)	131, 720
NsbI	TGCGCA	1 cut(s)	325
NspI	RCATGY	2 cut(s)	464, 471
PfeI	GAWTC	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	698
RsaI	GTAC	2 cut(s)	59, 284
RsaNI	GTAC	2 cut(s)	58, 283
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	434, 679
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	2 cut(s)	228, 274
SduI	GDGCHC	3 cut(s)	125, 203, 345
SfaNI	GCATC	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	47, 217
SmoI	CTYRAG	2 cut(s)	47, 217
Sse9I	AATT	5 cut(s)	454, 545, 561, 653, 712
SsiI	CCGC	3 cut(s)	224, 300, 405
SspMI	CTAG	1 cut(s)	567
StyD4I	CCNGG	2 cut(s)	226, 272
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	80, 155, 599
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	5 cut(s)	125, 138, 306, 345, 376
TasI	AATT	5 cut(s)	454, 545, 561, 653, 712
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	589
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	131, 720
Tsp45I	GTSAC	2 cut(s)	131, 720
TspDTI	ATGAA	2 cut(s)	17, 706
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	561, 712
XceI	RCATGY	2 cut(s)	464, 471
XspI	CTAG	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.