Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Forward (+)

14867896 .. 14869284

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGATTGACAAGGAAATCACTCACCCTATCCATCCTAGACACAAGCTCAAGATTGAATACACAGAGATCCCATTCTACTGTGATGGGTGCAAAGAAGCAGGGATTGGCCTCAAATACAAGTGTCAGCAATGTGAATTTGATCTTCACAAGTCATGTGCTGTGGCTCCTCTCTACATCAACCATCCCTTCTACAACAAATGTGAGTTTCAGTTTCTTTATAGACCGCCGGGGGCTCTCAGAAGAGTATGTGATGCGTGTAGGAAAGATGTTTCCGGGTTTGTGTACCACTGCAGGAGATGTGGATTTGATCTACACCCTTGTTGTGCAAACCTCCCACAAGTCCTAGATGATGGGAAGCACAACCTTTACTTGTGCCTCAAGTTAACCAGCGCTTGTCATCGGTGTGGAGGCAAGGGACCTGGTTGGTCTTACAGGTCTGACTGCAAGACCTACAACCTTCATGTGTCATGTGTGAAGGAGTTGCTTGTGGAGAGCTGGCAAGCCATGTATCTCAATGTGGACAAGAACAAGGTTAGGGAAATGCAGACTACAATTCCTAGCCTTAAGGGCACACTGCAAAACCATCATGGGAAAAAAGGAGGGAAGGTTGGCAAATGTTGCCAGATTGCTGGTGGCGCTGTTCGTGTTATCGTCTCTGCTATCCTCGGAGATCCTACTGCTCTAATAGGTGCTGCTGTTGCTGGTTTCATGTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

241

Amino Acids

26.86

Weight (kDa)

9.02

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	10 - 54	7.2e-10	C1 domain
C1_2	PF03107	77 - 110	8.4e-07	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	64, 668
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	421
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	49, 498
AluI	AGCT	2 cut(s)	49, 498
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	64, 668
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	395, 641
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	2 cut(s)	231, 277
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	5 cut(s)	42, 80, 192, 347, 594
BciT130I	CCWGG	1 cut(s)	423
BcnI	CCSGG	2 cut(s)	231, 277
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	3 cut(s)	39, 347, 561
BfmI	CTRYAG	1 cut(s)	292
BfoI	RGCGCY	2 cut(s)	396, 642
BfrI	CTTAAG	1 cut(s)	566
BglI	GCCNNNNNGGC	1 cut(s)	570
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
Bme1390I	CCNGG	3 cut(s)	231, 277, 423
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	168, 420
BmrFI	CCNGG	3 cut(s)	231, 277, 423
BmsI	GCATC	1 cut(s)	244
BpuEI	CTTGAG	2 cut(s)	35, 365
BpuMI	CCSGG	2 cut(s)	231, 277
BsaJI	CCNNGG	2 cut(s)	230, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	230, 667
BseGI	GGATG	2 cut(s)	34, 184
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	682
BshFI	GGCC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	230, 276
BslFI	GGGAC	1 cut(s)	432
BsmAI	GTCTC	1 cut(s)	661
BsmBI	CGTCTC	1 cut(s)	661
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	238, 575
Bsp143I	GATC	4 cut(s)	69, 142, 310, 673
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	168, 420
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	2 cut(s)	64, 668
BspTI	CTTAAG	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	230, 667
BssMI	GATC	4 cut(s)	69, 142, 310, 673
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	500, 504
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	34, 184
BstH2I	RGCGCY	2 cut(s)	396, 642
BstHHI	GCGC	2 cut(s)	395, 641
BstKTI	GATC	4 cut(s)	72, 145, 313, 676
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	4 cut(s)	69, 142, 310, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	570, 621, 638, 701
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	3 cut(s)	229, 275, 421
BstSFI	CTRYAG	1 cut(s)	292
BstSLI	GKGCMC	1 cut(s)	575
BstV1I	GCAGC	1 cut(s)	682
BstX2I	RGATCY	2 cut(s)	69, 673
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	2 cut(s)	69, 673
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	34, 184
BtsI	GCAGTG	2 cut(s)	289, 575
BtsIMutI	CAGTG	2 cut(s)	289, 575
Cac8I	GCNNGC	2 cut(s)	500, 504
CfoI	GCGC	2 cut(s)	395, 641
Cfr13I	GGNCC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	156, 464, 471, 508, 590, 712
CviJI	RGCY	7 cut(s)	49, 111, 167, 236, 498, 506, 564
CviKI_1	RGCY	7 cut(s)	49, 111, 167, 236, 498, 506, 564
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	4 cut(s)	71, 144, 312, 675
DpnII	GATC	4 cut(s)	69, 142, 310, 673
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	419
Eco47III	AGCGCT	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	6 cut(s)	159, 467, 474, 511, 593, 715
FaiI	YATR	8 cut(s)	157, 222, 250, 465, 472, 509, 591, 713
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	6 cut(s)	155, 463, 470, 507, 589, 711
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	2 cut(s)	21, 171
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	696
FspBI	CTAG	3 cut(s)	39, 347, 561
GlaI	GCGC	2 cut(s)	394, 640
GluI	GCNGC	1 cut(s)	696
HaeII	RGCGCY	2 cut(s)	396, 642
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	230, 276
HhaI	GCGC	2 cut(s)	395, 641
Hin1II	CATG	6 cut(s)	159, 467, 474, 511, 593, 715
Hin6I	GCGC	2 cut(s)	393, 639
HinP1I	GCGC	2 cut(s)	393, 639
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HpaI	GTTAAC	1 cut(s)	387
HpaII	CCGG	2 cut(s)	230, 276
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	286, 387, 523
Hpy188I	TCNGA	3 cut(s)	242, 442, 671
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	3 cut(s)	286, 387, 523
HpyAV	CCTTC	4 cut(s)	199, 470, 472, 601
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	6 cut(s)	93, 294, 329, 447, 547, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	570, 621, 638, 701
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	6 cut(s)	159, 467, 474, 511, 593, 715
HspAI	GCGC	2 cut(s)	393, 639
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	4 cut(s)	69, 142, 310, 673
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	421
MaeI	CTAG	3 cut(s)	39, 347, 561
MalI	GATC	4 cut(s)	71, 144, 312, 675
MboI	GATC	4 cut(s)	69, 142, 310, 673
MboII	GAAGA	3 cut(s)	16, 137, 255
MflI	RGATCY	2 cut(s)	69, 673
MhlI	GDGCHC	2 cut(s)	238, 575
MluCI	AATT	2 cut(s)	137, 555
MnlI	CCTC	7 cut(s)	122, 180, 344, 389, 404, 596, 677
MseI	TTAA	2 cut(s)	386, 567
MslI	CAYNNNNRTG	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	2 cut(s)	230, 276
MspR9I	CCNGG	3 cut(s)	231, 277, 423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	570, 621, 638, 701
NciI	CCSGG	2 cut(s)	231, 277
NdeII	GATC	4 cut(s)	69, 142, 310, 673
NlaIII	CATG	6 cut(s)	159, 467, 474, 511, 593, 715
NlaIV	GGNNCC	2 cut(s)	168, 420
PkrI	GCNGC	1 cut(s)	697
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	168, 420
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	69, 673
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	386, 567
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	4 cut(s)	69, 142, 310, 673
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	231, 277, 423
SduI	GDGCHC	2 cut(s)	238, 575
SexAI	ACCWGGT	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	3 cut(s)	50, 380, 566
SmoI	CTYRAG	3 cut(s)	50, 380, 566
Sse9I	AATT	2 cut(s)	137, 555
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	3 cut(s)	39, 347, 561
StyD4I	CCNGG	3 cut(s)	229, 275, 421
TaaI	ACNGT	1 cut(s)	83
TasI	AATT	2 cut(s)	137, 555
Tru1I	TTAA	2 cut(s)	386, 567
Tru9I	TTAA	2 cut(s)	386, 567
TscAI	CASTG	2 cut(s)	296, 582
TseI	GCWGC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	17, 452, 700
TspRI	CASTG	2 cut(s)	296, 582
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XspI	CTAG	3 cut(s)	39, 347, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.