Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Forward (+)

6663456 .. 6664481

Gene Structure 1026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAAATACAATGAGATATCCCACTTCAGCCACCCCCAACATAAGCTCAAGTTTGAGTACACAGAAATCCCTTTCAAGTGCGATGGCTGCAAGGAAGTAGGCATAGGATCGCGTTACAAGTGCGCGACATGCGACTTCGATCTCCACATGCACTGCGCCATACCCACTCCTTCCATCTTCCACCCTTTCTACACCAAGTGCTCCTTCCAGTTCCTCTCCCGAGCCCCCGGGGACTCCCCACGCTATTGCAATGCGTGCGAGAAGGACATAACTGGATTCGTGTACCATTGCAGGTCCTGCGGGTTTGATCTCCACCCTTGCTGCGCCAAGCTCCCCATGGTGCTGGACGACGGGGAGGTCAACCTCTATCTGTATAGGAAAGTGAGCAGCTCCTGCCATAAGTGCGGGCGCAAAGGGAGGAGCTGGAGTTATAGATCGAAATGCAAGAAGTACAATTTGCATGTGGCGTGTGTGAAGGAAATGCTTGTGGAAACTTGGCATGAGTTTTTGCGTACGCATGGGAAGAGTAGTAGTAGTGCTAGTAGGAAACTGGAGATGACTAGAATTCCTAGTCTCAGGAACATGCTTCAGAGCCATCACCATAAGAGCAGAGGTAAAGTGAAGAAGTGTTGTGAGATGGCTGGGTTGGCCGTGCAGTTTGTGATATCGGCGGTGTTGGGTGATCCGACAACGTTGATTGCTGGGGTTATTGGGTCACTTATGTCACGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

245

Amino Acids

27.7

Weight (kDa)

9.18

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	9 - 53	2.1e-10	C1 domain
C1_2	PF03107	72 - 109	3.4e-07	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	282
AccII	CGCG	2 cut(s)	112, 125
AciI	CCGC	3 cut(s)	300, 405, 671
AclI	AACGTT	1 cut(s)	692
AclWI	GGATC	2 cut(s)	115, 677
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	2 cut(s)	10, 572
AdeI	CACNNNGTG	1 cut(s)	198
AfaI	GTAC	4 cut(s)	59, 284, 452, 514
AgsI	TTSAA	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AleI	CACNNNNGTG	1 cut(s)	730
AluBI	AGCT	4 cut(s)	46, 331, 390, 423
AluI	AGCT	4 cut(s)	46, 331, 390, 423
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	2 cut(s)	115, 677
AlwNI	CAGNNNCTG	2 cut(s)	297, 393
Ama87I	CYCGRG	2 cut(s)	219, 227
AoxI	GGCC	1 cut(s)	648
ApeKI	GCWGC	3 cut(s)	87, 321, 387
ApoI	RAATTY	1 cut(s)	564
AspLEI	GCGC	4 cut(s)	125, 158, 326, 411
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	2 cut(s)	228, 229
AsuHPI	GGTGA	2 cut(s)	590, 692
AvaI	CYCGRG	2 cut(s)	219, 227
AvaII	GGWCC	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	74, 308, 399
BccI	CCATC	4 cut(s)	77, 182, 603, 631
BceAI	ACGGC	1 cut(s)	635
BcnI	CCSGG	2 cut(s)	228, 229
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	3 cut(s)	540, 561, 570
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	88, 322, 388
BlsI	GCNGC	3 cut(s)	89, 323, 389
Bme1390I	CCNGG	2 cut(s)	228, 229
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	2 cut(s)	219, 227
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	2 cut(s)	228, 229
BpmI	CTGGAG	2 cut(s)	445, 572
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	228, 229
BsaJI	CCNNGG	4 cut(s)	226, 227, 228, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bse1I	ACTGG	3 cut(s)	208, 277, 555
Bse3DI	GCAATG	2 cut(s)	256, 286
BseDI	CCNNGG	4 cut(s)	226, 227, 228, 336
BseMI	GCAATG	2 cut(s)	256, 286
BseMII	CTCAG	1 cut(s)	589
BseNI	ACTGG	3 cut(s)	208, 277, 555
BseRI	GAGGAG	1 cut(s)	433
BseXI	GCAGC	3 cut(s)	74, 308, 399
BseYI	CCCAGC	2 cut(s)	641, 701
BsgI	GTGCAG	1 cut(s)	674
Bsh1236I	CGCG	2 cut(s)	112, 125
BshFI	GGCC	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	2 cut(s)	219, 227
BsiSI	CCGG	1 cut(s)	228
BsiWI	CGTACG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	650
BsoBI	CYCGRG	2 cut(s)	219, 227
Bsp1286I	GDGCHC	2 cut(s)	203, 226
Bsp143I	GATC	5 cut(s)	107, 139, 307, 434, 682
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	3 cut(s)	300, 405, 671
BspANI	GGCC	1 cut(s)	650
BspCNI	CTCAG	1 cut(s)	588
BspFNI	CGCG	2 cut(s)	112, 125
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	115, 677
BsrDI	GCAATG	2 cut(s)	256, 286
BsrI	ACTGG	3 cut(s)	208, 277, 555
BssECI	CCNNGG	4 cut(s)	226, 227, 228, 336
BssMI	GATC	5 cut(s)	107, 139, 307, 434, 682
BssSI	CACGAG	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	726
Bst6I	CTCTTC	1 cut(s)	518
BstAPI	GCANNNNNTGC	3 cut(s)	255, 297, 393
BstC8I	GCNNGC	2 cut(s)	256, 407
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	1 cut(s)	336
BstFNI	CGCG	2 cut(s)	112, 125
BstHHI	GCGC	4 cut(s)	125, 158, 326, 411
BstKTI	GATC	5 cut(s)	110, 142, 310, 437, 685
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	5 cut(s)	107, 139, 307, 434, 682
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 129, 255, 297, 393, 402, 647
BstNSI	RCATGY	4 cut(s)	132, 151, 464, 586
BstSCI	CCNGG	2 cut(s)	226, 227
BstUI	CGCG	2 cut(s)	112, 125
BstV1I	GCAGC	3 cut(s)	74, 308, 399
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	650
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	256, 407
CaiI	CAGNNNCTG	2 cut(s)	297, 393
CfoI	GCGC	4 cut(s)	125, 158, 326, 411
Cfr13I	GGNCC	1 cut(s)	294
Cfr9I	CCCGGG	1 cut(s)	227
Csp6I	GTAC	4 cut(s)	58, 283, 451, 513
CviAII	CATG	7 cut(s)	129, 148, 337, 461, 500, 518, 583
CviQI	GTAC	4 cut(s)	58, 283, 451, 513
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	5 cut(s)	109, 141, 309, 436, 684
DpnII	GATC	5 cut(s)	107, 139, 307, 434, 682
DraIII	CACNNNGTG	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	226
Eco32I	GATATC	2 cut(s)	18, 666
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	10, 572
Eco88I	CYCGRG	2 cut(s)	219, 227
EcoO109I	RGGNCCY	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	564
EcoRV	GATATC	2 cut(s)	18, 666
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	7 cut(s)	132, 151, 340, 464, 503, 521, 586
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	7 cut(s)	128, 147, 336, 460, 499, 517, 582
FauI	CCCGC	2 cut(s)	293, 398
Fnu4HI	GCNGC	3 cut(s)	88, 322, 388
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	3 cut(s)	88, 322, 388
FspBI	CTAG	3 cut(s)	540, 561, 570
GlaI	GCGC	4 cut(s)	124, 157, 325, 410
GluI	GCNGC	3 cut(s)	88, 322, 388
GsaI	CCCAGC	2 cut(s)	645, 705
GsuI	CTGGAG	2 cut(s)	445, 572
HaeIII	GGCC	1 cut(s)	650
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	4 cut(s)	125, 158, 326, 411
Hin1II	CATG	7 cut(s)	132, 151, 340, 464, 503, 521, 586
Hin6I	GCGC	4 cut(s)	123, 156, 324, 409
HinP1I	GCGC	4 cut(s)	123, 156, 324, 409
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	233, 276
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	590, 692
Hpy166II	GTNNAC	3 cut(s)	60, 283, 361
Hpy188I	TCNGA	2 cut(s)	591, 687
Hpy188III	TCNNGA	3 cut(s)	219, 577, 726
Hpy8I	GTNNAC	3 cut(s)	60, 283, 361
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	180, 214, 256, 469
HpyCH4IV	ACGT	1 cut(s)	692
HpyCH4V	TGCA	7 cut(s)	90, 151, 249, 291, 444, 460, 655
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 129, 255, 297, 393, 402, 647
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	1 cut(s)	692
Hsp92II	CATG	7 cut(s)	132, 151, 340, 464, 503, 521, 586
HspAI	GCGC	4 cut(s)	123, 156, 324, 409
Kzo9I	GATC	5 cut(s)	107, 139, 307, 434, 682
LmnI	GCTCC	4 cut(s)	206, 336, 395, 420
Lsp1109I	GCAGC	3 cut(s)	74, 308, 399
MaeI	CTAG	3 cut(s)	540, 561, 570
MaeII	ACGT	1 cut(s)	692
MaeIII	GTNAC	3 cut(s)	113, 714, 723
MalI	GATC	5 cut(s)	109, 141, 309, 436, 684
MboI	GATC	5 cut(s)	107, 139, 307, 434, 682
MboII	GAAGA	3 cut(s)	169, 535, 634
MhlI	GDGCHC	2 cut(s)	203, 226
MluCI	AATT	2 cut(s)	454, 564
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	710
MnlI	CCTC	6 cut(s)	224, 349, 374, 411, 605, 722
MslI	CAYNNNNRTG	1 cut(s)	730
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	228, 229
MvnI	CGCG	2 cut(s)	112, 125
MwoI	GCNNNNNNNGC	7 cut(s)	87, 129, 255, 297, 393, 402, 647
NciI	CCSGG	2 cut(s)	228, 229
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	5 cut(s)	107, 139, 307, 434, 682
NlaIII	CATG	7 cut(s)	132, 151, 340, 464, 503, 521, 586
NmuCI	GTSAC	2 cut(s)	714, 723
NspI	RCATGY	4 cut(s)	132, 151, 464, 586
OliI	CACNNNNGTG	1 cut(s)	730
PfeI	GAWTC	1 cut(s)	276
Pfl23II	CGTACG	1 cut(s)	512
PkrI	GCNGC	3 cut(s)	89, 323, 389
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	294
PspFI	CCCAGC	2 cut(s)	641, 701
PspLI	CGTACG	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	294
PspPPI	RGGWCCY	1 cut(s)	294
PstNI	CAGNNNCTG	2 cut(s)	297, 393
RsaI	GTAC	4 cut(s)	59, 284, 452, 514
RsaNI	GTAC	4 cut(s)	58, 283, 451, 513
RseI	CAYNNNNRTG	1 cut(s)	730
SatI	GCNGC	3 cut(s)	88, 322, 388
Sau3AI	GATC	5 cut(s)	107, 139, 307, 434, 682
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	228, 229
SduI	GDGCHC	2 cut(s)	203, 226
SetI	ASST	9 cut(s)	48, 296, 333, 360, 366, 392, 425, 616, 695
SinI	GGWCC	1 cut(s)	294
SmaI	CCCGGG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	730
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	454, 564
SsiI	CCGC	3 cut(s)	300, 405, 671
SspMI	CTAG	3 cut(s)	540, 561, 570
StyD4I	CCNGG	2 cut(s)	226, 227
StyI	CCWWGG	1 cut(s)	336
TaiI	ACGT	1 cut(s)	695
TaqI	TCGA	2 cut(s)	138, 437
TasI	AATT	2 cut(s)	454, 564
TatI	WGTACW	2 cut(s)	57, 450
TfiI	GAWTC	1 cut(s)	276
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	714, 723
TseI	GCWGC	3 cut(s)	87, 321, 387
Tsp45I	GTSAC	2 cut(s)	714, 723
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	4 cut(s)	132, 151, 464, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmaI	CCCGGG	1 cut(s)	227
XspI	CTAG	3 cut(s)	540, 561, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.