Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004809

Physical Location & Seq

Genomic Coordinates Reverse (-)

13837624 .. 13838360

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G107600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAATACAATGAGATATCCCACTTCAGCCACCCCCAACACAAGCTCAAGTTTGAGTACACAGAAATCCCATTCAAGTGTGATGGATGCAAGGAGGTAGGCATAGGCTCGCGCTACAAGTGCGCCATGTGCGATTTCGATCTCCACATGCATTGTGCCATGCCTTCCCCTTCTATCTTCCACCCTTTCTACACCAAGTGCTCTTTTCAATTCTTCTCGAGGCCACCGGGGAATAATCCTCGATTTTGCAATGCATGTGAGAAAGATATTACCGGATTCACATACCACTGCACGTCCTGTGGGTTCGACCTTCATCCGTGTTGCGCGAAGCTCCCCATGGTGCTCAACGACGGCGAGGTCAAGCTCTATCTGTATCGGAAGGTGAGCAGCTCTTGTCATAAATGTGGGCGTAAAGGGCGTAGTTGGAGTTATAGGTCAAAATGTAAGAAGTATAATTTGCATGTGGCATGTGTTAAGGAAATGCTTGTGGAAACTTGGCATGAGTTTTTGGGGTCACATGGGAATAAAAATACCACTAGGAGATTGGAGATGACTAGAATTCCTAGCCTTAAAAATACGCTCCAAACTCATCATCATAAGAGCAAAGGTAAAGTGAAGAAGTGCTGTGAGATAGCTGGATTGGCTGTGCAATTTGTGATATCAGCTGTGTTGGGTGATCCAACGACTCTGATTGCTGGGGTGATTGGGTCGTTAATGTCGCGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

243

Amino Acids

27.53

Weight (kDa)

9.22

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16050
fragaria_vesca	FvH4_2g07730 FvH4_2g17140
malus_domestica	MD00G1018400.v1.1 MD05G1144800.v1.1 MD10G1084700.v1.1 MD10G1144600.v1.1
prunus_persica	Prupe.8G107600_v2.0.a1 Prupe.8G182900_v2.0.a1
pyrus_communis	pycom05g06330 pycom10g12430
rosa_chinensis	RchiOBHm_Chr6g0262061 RchiOBHm_Chr6g0281581
rosa_laevigata	RLG00000012961 RLG00000014458
rosa_multiflora	Rmu_co8438015.1_g000001 Rmu_ssc0000125.1_g000010 Rmu_ssc0000211.1_g000017
rosa_roxburghii	Rroxscaffold_7G00186980
rosa_rugosa	Rorug05G0595200 Rorug06G0141900
rosa_samantha	Rh6AG114800 Rh6AG254300 Rh6BG108900 Rh6BG257300 Rh6CG106100 Rh6CG256600 Rh6DG096500 Rh6DG248400
rosa_wichuraiana	Rw6G009970 Rw6G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccII	CGCG	3 cut(s)	112, 326, 721
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	10
AdeI	CACNNNGTG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	76, 209
AjiI	CACGTC	1 cut(s)	294
AluBI	AGCT	6 cut(s)	46, 331, 364, 390, 635, 665
AluI	AGCT	6 cut(s)	46, 331, 364, 390, 635, 665
Alw21I	GWGCWC	2 cut(s)	203, 345
AlwI	GGATC	1 cut(s)	671
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	558
AspLEI	GCGC	3 cut(s)	114, 125, 326
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	3 cut(s)	394, 686, 712
AvaI	CYCGRG	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	203, 345
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	228
BfaI	CTAG	3 cut(s)	537, 555, 564
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	228
BmeT110I	CYCGRG	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	227, 336
BsaWI	WCCGGW	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	256
Bse8I	GATNNNNATC	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	227, 336
BseGI	GGATG	2 cut(s)	92, 313
BseJI	GATNNNNATC	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	695
BsgI	GTGCAG	1 cut(s)	274
Bsh1236I	CGCG	3 cut(s)	112, 326, 721
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	203, 345
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	227, 273
BsnI	GGCC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	203, 345
Bsp143I	GATC	2 cut(s)	139, 676
Bsp19I	CCATGG	1 cut(s)	336
Bsp68I	TCGCGA	1 cut(s)	721
BspANI	GGCC	1 cut(s)	223
BspFNI	CGCG	3 cut(s)	112, 326, 721
BspPI	GGATC	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	227, 336
BssMI	GATC	2 cut(s)	139, 676
BssT1I	CCWWGG	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	110, 723
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	92, 313
BstFNI	CGCG	3 cut(s)	112, 326, 721
BstHHI	GCGC	3 cut(s)	114, 125, 326
BstKTI	GATC	2 cut(s)	142, 679
BstMBI	GATC	2 cut(s)	139, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 129, 415, 641
BstNSI	RCATGY	4 cut(s)	151, 258, 464, 471
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	3 cut(s)	112, 326, 721
BstV1I	GCAGC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	92, 313
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
BtuMI	TCGCGA	1 cut(s)	721
Cac8I	GCNNGC	2 cut(s)	110, 723
CfoI	GCGC	3 cut(s)	114, 125, 326
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	134, 169
CviAII	CATG	9 cut(s)	127, 148, 160, 255, 337, 461, 468, 500, 518
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	2 cut(s)	141, 678
DpnII	GATC	2 cut(s)	139, 676
DraIII	CACNNNGTG	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	336
Eco32I	GATATC	2 cut(s)	18, 660
Eco57I	CTGAAG	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	558
EcoRV	GATATC	2 cut(s)	18, 660
EcoT14I	CCWWGG	1 cut(s)	336
EcoT22I	ATGCAT	2 cut(s)	153, 256
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	9 cut(s)	130, 151, 163, 258, 340, 464, 471, 503, 521
FatI	CATG	9 cut(s)	126, 147, 159, 254, 336, 460, 467, 499, 517
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	2 cut(s)	99, 300
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	3 cut(s)	537, 555, 564
GlaI	GCGC	3 cut(s)	113, 124, 325
GluI	GCNGC	1 cut(s)	388
GsaI	CCCAGC	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	2 cut(s)	227, 273
HhaI	GCGC	3 cut(s)	114, 125, 326
Hin1II	CATG	9 cut(s)	130, 151, 163, 258, 340, 464, 471, 503, 521
Hin6I	GCGC	3 cut(s)	112, 123, 324
HinP1I	GCGC	3 cut(s)	112, 123, 324
HinfI	GANTC	2 cut(s)	276, 685
HpaII	CCGG	2 cut(s)	227, 273
HphI	GGTGA	3 cut(s)	394, 686, 712
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	378, 690
Hpy188III	TCNNGA	2 cut(s)	217, 720
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	4 cut(s)	174, 180, 320, 373
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	7 cut(s)	90, 151, 249, 254, 291, 460, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 129, 415, 641
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	9 cut(s)	130, 151, 163, 258, 340, 464, 471, 503, 521
HspAI	GCGC	3 cut(s)	112, 123, 324
Kzo9I	GATC	2 cut(s)	139, 676
LmnI	GCTCC	2 cut(s)	336, 585
LpnPI	CCDG	5 cut(s)	240, 286, 310, 621, 681
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	3 cut(s)	537, 555, 564
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	2 cut(s)	141, 678
MboI	GATC	2 cut(s)	139, 676
MboII	GAAGA	3 cut(s)	169, 205, 628
MhlI	GDGCHC	2 cut(s)	203, 345
MluCI	AATT	4 cut(s)	209, 454, 558, 650
MlyI	GAGTC	1 cut(s)	679
MmeI	TCCRAC	2 cut(s)	404, 704
MnlI	CCTC	4 cut(s)	88, 213, 249, 349
Mph1103I	ATGCAT	2 cut(s)	153, 256
MseI	TTAA	3 cut(s)	474, 570, 713
MslI	CAYNNNNRTG	2 cut(s)	76, 402
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	2 cut(s)	227, 273
MspR9I	CCNGG	1 cut(s)	228
MvnI	CGCG	3 cut(s)	112, 326, 721
MwoI	GCNNNNNNNGC	4 cut(s)	120, 129, 415, 641
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	139, 676
NlaIII	CATG	9 cut(s)	130, 151, 163, 258, 340, 464, 471, 503, 521
NmuCI	GTSAC	1 cut(s)	513
NruI	TCGCGA	1 cut(s)	721
NsiI	ATGCAT	2 cut(s)	153, 256
NspI	RCATGY	4 cut(s)	151, 258, 464, 471
PaeR7I	CTCGAG	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	1 cut(s)	679
PpsI	GAGTC	1 cut(s)	679
PspFI	CCCAGC	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	665
RruI	TCGCGA	1 cut(s)	721
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	76, 402
SaqAI	TTAA	3 cut(s)	474, 570, 713
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	2 cut(s)	139, 676
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	203, 345
SfaNI	GCATC	1 cut(s)	77
Sfr274I	CTCGAG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	76, 402
SmlI	CTYRAG	2 cut(s)	47, 217
SmoI	CTYRAG	2 cut(s)	47, 217
Sse9I	AATT	4 cut(s)	209, 454, 558, 650
SspMI	CTAG	3 cut(s)	537, 555, 564
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	336
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	4 cut(s)	138, 218, 241, 306
TasI	AATT	4 cut(s)	209, 454, 558, 650
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	3 cut(s)	474, 570, 713
Tru9I	TTAA	3 cut(s)	474, 570, 713
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	2 cut(s)	17, 302
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	4 cut(s)	151, 258, 464, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	217
XspI	CTAG	3 cut(s)	537, 555, 564
Zsp2I	ATGCAT	2 cut(s)	153, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.